Wall clock time and date at job start Fri Apr 10 2020 20:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 120.00301 * 2 1 4 4 H 1.48504 * 109.46941 * 240.00287 * 3 2 1 5 5 H 1.48497 * 109.46618 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47019 * 120.00173 * 3 2 1 7 7 C 1.38816 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00200 * 179.72106 * 7 2 1 9 9 N 1.36938 * 119.99412 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00075 * 179.72379 * 9 7 2 11 11 C 1.50693 * 109.47376 * 179.97438 * 10 9 7 12 12 C 1.30997 * 120.00113 * 127.15414 * 11 10 9 13 13 C 1.50694 * 120.00034 * 7.56295 * 12 11 10 14 14 N 1.46504 * 109.47708 * 127.00150 * 13 12 11 15 15 C 1.34771 * 120.00472 * 179.97438 * 14 13 12 16 16 O 1.21600 * 119.99874 * 0.02562 * 15 14 13 17 17 C 1.47511 * 120.00028 * 180.02562 * 15 14 13 18 18 C 1.41053 * 119.39311 * 0.02562 * 17 15 14 19 19 C 1.35186 * 121.65403 * 179.97438 * 18 17 15 20 20 C 1.41387 * 119.92934 * 0.02562 * 19 18 17 21 21 N 1.31930 * 134.38925 * 179.97438 * 20 19 18 22 22 N 1.39921 * 109.05665 * 179.97438 * 21 20 19 23 23 H 0.97004 * 124.97951 * 179.97438 * 22 21 20 24 24 C 1.33808 * 110.03131 * 0.02562 * 22 21 20 25 25 C 1.38540 * 107.83620 * 359.97438 * 24 22 21 26 26 C 1.38223 * 119.39581 * 179.72727 * 17 15 14 27 27 H 0.97005 * 119.99917 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00121 * 359.72328 * 9 7 2 29 29 H 1.09003 * 109.46880 * 300.00279 * 10 9 7 30 30 H 1.09003 * 109.46792 * 59.99575 * 10 9 7 31 31 H 1.08007 * 120.00094 * 307.15591 * 11 10 9 32 32 H 1.08004 * 120.00122 * 187.55966 * 12 11 10 33 33 H 1.09003 * 109.47290 * 247.00247 * 13 12 11 34 34 H 1.08998 * 109.46955 * 7.00332 * 13 12 11 35 35 H 0.97009 * 119.99030 * 0.02562 * 14 13 12 36 36 H 1.08000 * 119.17033 * 0.02562 * 18 17 15 37 37 H 1.07998 * 120.03529 * 180.02562 * 19 18 17 38 38 H 1.08001 * 126.08522 * 180.02562 * 24 22 21 39 39 H 1.08003 * 120.32143 * 0.02865 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0051 9 7 1.3256 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0083 11 6 1.0787 -4.8022 -0.0075 12 6 1.1701 -5.7427 -0.9147 13 6 2.3500 -5.7738 -1.8516 14 7 2.9740 -7.0986 -1.8076 15 6 4.0541 -7.3604 -2.5698 16 8 4.5112 -6.4969 -3.2938 17 6 4.6820 -8.6945 -2.5258 18 6 4.1410 -9.6868 -1.6818 19 6 4.6794 -10.9245 -1.6061 20 6 5.8136 -11.2492 -2.3852 21 7 6.5521 -12.3324 -2.5335 22 7 7.5675 -12.0698 -3.4597 23 1 8.2427 -12.7072 -3.7403 24 6 7.4711 -10.8101 -3.9006 25 6 6.3869 -10.2216 -3.2701 26 6 5.7859 -8.9512 -3.3169 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3880 0.0021 29 1 2.6813 -3.7118 -0.9008 30 1 2.6881 -3.7172 0.8791 31 1 0.3015 -4.8477 0.7411 32 1 0.3998 -6.4959 -0.9912 33 1 2.0133 -5.5644 -2.8670 34 1 3.0759 -5.0200 -1.5468 35 1 2.6091 -7.7875 -1.2302 36 1 3.2744 -9.4520 -1.0815 37 1 4.2436 -11.6644 -0.9512 38 1 8.1222 -10.3366 -4.6205 39 1 6.1857 -8.1822 -3.9613 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497662425.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:48:40 Heat of formation + Delta-G solvation = 97.106781 kcal Electronic energy + Delta-G solvation = -22038.522812 eV Core-core repulsion = 18562.841374 eV Total energy + Delta-G solvation = -3475.681438 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.72951 -39.79686 -37.14650 -36.42115 -34.49960 -32.86278 -32.56202 -31.20175 -30.36937 -29.40789 -26.78708 -25.17576 -24.19475 -23.01330 -22.44592 -21.10113 -20.54376 -18.94648 -18.64005 -17.58902 -17.06291 -16.68732 -16.22381 -15.57055 -15.35758 -14.86059 -14.57553 -14.45148 -14.25825 -14.02308 -13.57024 -13.33738 -13.24616 -13.09721 -12.62020 -12.46531 -12.02151 -11.92831 -11.67779 -10.92890 -10.79174 -10.75801 -10.74444 -10.40630 -10.03231 -9.98817 -9.74106 -9.28849 -9.11430 -8.98257 -8.56542 -8.04225 -6.88858 -5.73822 -3.02840 0.10380 1.11063 1.93546 2.18263 2.30452 2.84903 3.37583 3.47997 3.51730 3.53382 3.68979 3.82536 4.12982 4.60350 4.64334 4.68794 4.79054 4.91567 4.98772 5.16565 5.18842 5.34505 5.59248 5.69702 5.74125 5.91339 5.97458 6.00678 6.04175 6.09681 6.29980 6.32781 6.42025 6.53064 6.58501 6.63165 6.91730 7.08713 7.18578 7.56443 7.72960 8.27076 8.44712 9.55959 10.12153 10.47566 11.48888 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.030991 B = 0.002181 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.277165 B =12837.039969 C =13428.436600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.728 5.728 10 C 0.161 3.839 11 C -0.109 4.109 12 C -0.200 4.200 13 C 0.141 3.859 14 N -0.720 5.720 15 C 0.558 3.442 16 O -0.542 6.542 17 C -0.174 4.174 18 C -0.050 4.050 19 C -0.110 4.110 20 C 0.119 3.881 21 N -0.310 5.310 22 N -0.423 5.423 23 H 0.445 0.555 24 C 0.105 3.895 25 C -0.221 4.221 26 C 0.037 3.963 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.037 0.963 30 H 0.028 0.972 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.398 0.602 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.194 0.806 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.498 -27.802 -6.715 31.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.372 5.372 10 C 0.034 3.966 11 C -0.128 4.128 12 C -0.219 4.219 13 C 0.019 3.981 14 N -0.371 5.371 15 C 0.346 3.654 16 O -0.421 6.421 17 C -0.179 4.179 18 C -0.073 4.073 19 C -0.131 4.131 20 C -0.036 4.036 21 N -0.137 5.137 22 N -0.122 5.122 23 H 0.290 0.710 24 C -0.054 4.054 25 C -0.231 4.231 26 C 0.015 3.985 27 H 0.065 0.935 28 H 0.218 0.782 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.233 0.767 36 H 0.148 0.852 37 H 0.152 0.848 38 H 0.211 0.789 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 13.106 -28.291 -6.844 31.922 hybrid contribution 0.109 1.031 -0.105 1.042 sum 13.215 -27.260 -6.949 31.082 Atomic orbital electron populations 1.69656 1.05122 1.25796 1.57624 1.24760 0.95568 0.97745 1.02931 0.86232 0.78500 0.83347 0.77915 1.21169 1.21680 1.21229 1.19208 0.91075 0.84001 1.42874 0.91103 1.42265 1.05894 0.99506 1.89529 1.20019 0.93008 0.84745 0.98798 1.23291 0.99045 0.94763 0.95730 1.22595 0.98872 1.02140 0.98306 1.20574 0.94021 0.83935 0.99589 1.45938 1.30618 1.15436 1.45119 1.18123 0.80099 0.87245 0.79925 1.90801 1.63223 1.47560 1.40496 1.19509 1.00206 0.94625 1.03548 1.20693 0.98429 0.92039 0.96153 1.19727 0.94909 0.97317 1.01186 1.21081 0.95672 0.90669 0.96153 1.77677 1.02611 1.21105 1.12351 1.46354 1.24352 1.10603 1.30924 0.70993 1.22910 0.97986 0.86017 0.98500 1.19568 1.00766 0.96983 1.05784 1.20702 0.91065 0.93274 0.93418 0.93452 0.78169 0.94579 0.95412 0.86900 0.87035 0.90977 0.89219 0.76712 0.85152 0.84833 0.78886 0.84072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.65 13.06 55.49 0.72 -27.92 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.83 29.55 -169.99 -5.02 17.80 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.73 -18.92 5.59 -61.08 -0.34 -19.26 16 10 C 0.16 3.31 6.34 -5.19 -0.03 3.28 16 11 C -0.11 -1.77 9.63 -36.03 -0.35 -2.11 16 12 C -0.20 -2.72 9.63 -36.03 -0.35 -3.06 16 13 C 0.14 2.03 5.76 -5.19 -0.03 2.00 16 14 N -0.72 -8.59 5.49 -62.54 -0.34 -8.94 16 15 C 0.56 7.58 7.75 -12.48 -0.10 7.48 16 16 O -0.54 -9.46 16.26 5.28 0.09 -9.38 16 17 C -0.17 -1.90 5.86 -105.06 -0.62 -2.51 16 18 C -0.05 -0.44 9.39 -39.60 -0.37 -0.81 16 19 C -0.11 -0.98 10.06 -39.47 -0.40 -1.37 16 20 C 0.12 1.20 7.49 -82.97 -0.62 0.58 16 21 N -0.31 -2.98 12.69 33.30 0.42 -2.56 16 22 N -0.42 -2.32 7.17 30.87 0.22 -2.10 16 23 H 0.45 0.68 8.96 -182.73 -1.64 -0.95 16 24 C 0.10 0.55 12.09 -16.58 -0.20 0.35 16 25 C -0.22 -1.97 6.32 -105.24 -0.66 -2.64 16 26 C 0.04 0.37 9.64 -38.69 -0.37 0.00 16 27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.38 10.44 7.66 -40.82 -0.31 10.13 16 29 H 0.04 0.76 5.30 -51.93 -0.28 0.48 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 32 H 0.11 1.24 8.06 -52.48 -0.42 0.82 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.09 1.50 5.29 -51.93 -0.27 1.23 16 35 H 0.40 3.50 6.39 -40.82 -0.26 3.24 16 36 H 0.13 0.79 6.27 -52.49 -0.33 0.46 16 37 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.19 0.16 8.06 -52.49 -0.42 -0.26 16 39 H 0.14 1.36 7.58 -52.48 -0.40 0.96 16 LS Contribution 338.69 15.07 5.10 5.10 Total: -1.00 -37.23 338.69 -9.07 -46.30 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -5.57 Total: 7.35 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -4.34 Total: -6.39 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: 0.68 Total: -60.78 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -37.23 -9.07 -46.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497662425.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.402 kcal (2) G-P(sol) polarization free energy of solvation -37.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds