Wall clock time and date at job start Fri Apr 10 2020 20:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86808 * 120.00301 * 2 1 4 4 H 1.48504 * 109.46941 * 240.00287 * 3 2 1 5 5 H 1.48497 * 109.46618 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47019 * 120.00173 * 3 2 1 7 7 C 1.38816 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00200 * 179.72106 * 7 2 1 9 9 N 1.36938 * 119.99412 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00075 * 179.72379 * 9 7 2 11 11 C 1.50693 * 109.47376 * 179.97438 * 10 9 7 12 12 C 1.30997 * 120.00113 * 127.15414 * 11 10 9 13 13 C 1.50694 * 120.00034 * 7.56295 * 12 11 10 14 14 N 1.46504 * 109.47708 * 127.00150 * 13 12 11 15 15 C 1.34771 * 120.00472 * 179.97438 * 14 13 12 16 16 O 1.21600 * 119.99874 * 0.02562 * 15 14 13 17 17 C 1.47511 * 120.00028 * 180.02562 * 15 14 13 18 18 C 1.41053 * 119.39311 * 0.02562 * 17 15 14 19 19 C 1.35186 * 121.65403 * 179.97438 * 18 17 15 20 20 C 1.41387 * 119.92934 * 0.02562 * 19 18 17 21 21 N 1.31930 * 134.38925 * 179.97438 * 20 19 18 22 22 N 1.39921 * 109.05665 * 179.97438 * 21 20 19 23 23 H 0.97004 * 124.97951 * 179.97438 * 22 21 20 24 24 C 1.33808 * 110.03131 * 0.02562 * 22 21 20 25 25 C 1.38540 * 107.83620 * 359.97438 * 24 22 21 26 26 C 1.38223 * 119.39581 * 179.72727 * 17 15 14 27 27 H 0.97005 * 119.99917 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00121 * 359.72328 * 9 7 2 29 29 H 1.09003 * 109.46880 * 300.00279 * 10 9 7 30 30 H 1.09003 * 109.46792 * 59.99575 * 10 9 7 31 31 H 1.08007 * 120.00094 * 307.15591 * 11 10 9 32 32 H 1.08004 * 120.00122 * 187.55966 * 12 11 10 33 33 H 1.09003 * 109.47290 * 247.00247 * 13 12 11 34 34 H 1.08998 * 109.46955 * 7.00332 * 13 12 11 35 35 H 0.97009 * 119.99030 * 0.02562 * 14 13 12 36 36 H 1.08000 * 119.17033 * 0.02562 * 18 17 15 37 37 H 1.07998 * 120.03529 * 180.02562 * 19 18 17 38 38 H 1.08001 * 126.08522 * 180.02562 * 24 22 21 39 39 H 1.08003 * 120.32143 * 0.02865 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0051 9 7 1.3256 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0083 11 6 1.0787 -4.8022 -0.0075 12 6 1.1701 -5.7427 -0.9147 13 6 2.3500 -5.7738 -1.8516 14 7 2.9740 -7.0986 -1.8076 15 6 4.0541 -7.3604 -2.5698 16 8 4.5112 -6.4969 -3.2938 17 6 4.6820 -8.6945 -2.5258 18 6 4.1410 -9.6868 -1.6818 19 6 4.6794 -10.9245 -1.6061 20 6 5.8136 -11.2492 -2.3852 21 7 6.5521 -12.3324 -2.5335 22 7 7.5675 -12.0698 -3.4597 23 1 8.2427 -12.7072 -3.7403 24 6 7.4711 -10.8101 -3.9006 25 6 6.3869 -10.2216 -3.2701 26 6 5.7859 -8.9512 -3.3169 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3880 0.0021 29 1 2.6813 -3.7118 -0.9008 30 1 2.6881 -3.7172 0.8791 31 1 0.3015 -4.8477 0.7411 32 1 0.3998 -6.4959 -0.9912 33 1 2.0133 -5.5644 -2.8670 34 1 3.0759 -5.0200 -1.5468 35 1 2.6091 -7.7875 -1.2302 36 1 3.2744 -9.4520 -1.0815 37 1 4.2436 -11.6644 -0.9512 38 1 8.1222 -10.3366 -4.6205 39 1 6.1857 -8.1822 -3.9613 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497662425.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:48:39 Heat of formation + Delta-G solvation = 69.296397 kcal Electronic energy + Delta-G solvation = -22039.728761 eV Core-core repulsion = 18562.841374 eV Total energy + Delta-G solvation = -3476.887387 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.31818 -40.81149 -38.11225 -37.59901 -36.09555 -34.41679 -33.21151 -32.43679 -31.68002 -30.13915 -28.13037 -26.67231 -25.05033 -24.36297 -23.78631 -21.70025 -21.49978 -20.20580 -19.26014 -19.08761 -18.17061 -17.67456 -17.41092 -16.74171 -16.42530 -16.00643 -15.80002 -15.42558 -15.22554 -15.12302 -14.94612 -14.88337 -14.19267 -14.09947 -13.92543 -13.84137 -13.25556 -12.90426 -12.75322 -12.69291 -12.52654 -12.21008 -11.88686 -11.63749 -11.43348 -11.39896 -11.09683 -10.98482 -10.32210 -9.95827 -9.82808 -8.97968 -8.70455 -7.96154 -5.25563 -0.49792 0.38237 1.08159 1.34693 1.47323 1.50938 1.57108 1.78752 1.95681 2.37097 2.57530 2.90887 3.21759 3.36921 3.65411 3.81711 3.87914 4.09610 4.16310 4.19656 4.21115 4.38509 4.38679 4.44827 4.54757 4.65032 4.89791 4.94151 5.07743 5.10817 5.32917 5.35123 5.38914 5.43062 5.46992 5.61727 5.72234 5.89370 6.19402 6.26396 6.50554 6.61054 7.27135 7.32312 8.06420 8.31402 9.26943 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.030991 B = 0.002181 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.277165 B =12837.039969 C =13428.436600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.976 3.024 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.251 4.251 8 H 0.073 0.927 9 N -0.741 5.741 10 C 0.160 3.840 11 C -0.134 4.134 12 C -0.159 4.159 13 C 0.141 3.859 14 N -0.706 5.706 15 C 0.557 3.443 16 O -0.591 6.591 17 C -0.199 4.199 18 C -0.046 4.046 19 C -0.121 4.121 20 C 0.101 3.899 21 N -0.346 5.346 22 N -0.409 5.409 23 H 0.463 0.537 24 C 0.141 3.859 25 C -0.254 4.254 26 C 0.042 3.958 27 H 0.253 0.747 28 H 0.376 0.624 29 H 0.033 0.967 30 H 0.024 0.976 31 H 0.125 0.875 32 H 0.152 0.848 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.415 0.585 36 H 0.154 0.846 37 H 0.149 0.851 38 H 0.243 0.757 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.684 -29.683 -7.197 33.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.202 1.202 7 C -0.383 4.383 8 H 0.091 0.909 9 N -0.384 5.384 10 C 0.034 3.966 11 C -0.154 4.154 12 C -0.178 4.178 13 C 0.018 3.982 14 N -0.358 5.358 15 C 0.347 3.653 16 O -0.473 6.473 17 C -0.203 4.203 18 C -0.069 4.069 19 C -0.142 4.142 20 C -0.053 4.053 21 N -0.174 5.174 22 N -0.109 5.109 23 H 0.312 0.688 24 C -0.020 4.020 25 C -0.264 4.264 26 C 0.021 3.979 27 H 0.061 0.939 28 H 0.208 0.792 29 H 0.051 0.949 30 H 0.042 0.958 31 H 0.143 0.857 32 H 0.169 0.831 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.254 0.746 36 H 0.172 0.828 37 H 0.167 0.833 38 H 0.259 0.741 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 14.318 -30.265 -7.295 34.267 hybrid contribution -0.083 1.435 -0.077 1.439 sum 14.236 -28.831 -7.372 32.988 Atomic orbital electron populations 1.69809 1.06541 1.26285 1.59123 1.25613 0.96523 1.01188 1.03423 0.85178 0.77235 0.78927 0.78225 1.20514 1.21779 1.20210 1.19603 0.91474 0.85381 1.41821 0.90884 1.42472 1.05692 1.00771 1.89464 1.20095 0.93803 0.84433 0.98242 1.23036 0.99477 0.94609 0.98240 1.22797 0.98252 1.01353 0.95365 1.20382 0.93905 0.84655 0.99251 1.45724 1.30163 1.14848 1.45085 1.18575 0.79857 0.87821 0.79034 1.90767 1.64659 1.49244 1.42632 1.19382 1.01397 0.93760 1.05799 1.20822 0.98911 0.91400 0.95736 1.19961 0.94972 0.97701 1.01535 1.21413 0.96174 0.91128 0.96577 1.77610 1.04007 1.21579 1.14254 1.46419 1.23697 1.11205 1.29603 0.68843 1.23655 0.96341 0.85170 0.96823 1.19806 1.02585 0.96613 1.07356 1.20793 0.90681 0.93779 0.92683 0.93853 0.79217 0.94940 0.95791 0.85681 0.83063 0.91826 0.91910 0.74609 0.82818 0.83323 0.74086 0.84278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.29 13.06 21.65 0.28 -60.01 16 2 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 3 Si 0.98 47.31 29.55 68.60 2.03 49.34 16 4 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.25 -14.62 9.99 84.03 0.84 -13.78 16 8 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 9 N -0.74 -39.27 5.59 -347.17 -1.94 -41.21 16 10 C 0.16 6.67 6.34 85.63 0.54 7.21 16 11 C -0.13 -4.24 9.63 25.65 0.25 -3.99 16 12 C -0.16 -3.99 9.63 25.65 0.25 -3.74 16 13 C 0.14 4.01 5.76 85.63 0.49 4.50 16 14 N -0.71 -16.21 5.49 -470.03 -2.58 -18.79 16 15 C 0.56 15.17 7.75 86.69 0.67 15.85 16 16 O -0.59 -21.29 16.26 -4.03 -0.07 -21.35 16 17 C -0.20 -4.25 5.86 -20.15 -0.12 -4.37 16 18 C -0.05 -0.74 9.39 22.26 0.21 -0.54 16 19 C -0.12 -2.01 10.06 22.34 0.22 -1.78 16 20 C 0.10 1.93 7.49 42.27 0.32 2.24 16 21 N -0.35 -6.16 12.69 -48.54 -0.62 -6.77 16 22 N -0.41 -3.39 7.17 -56.26 -0.40 -3.80 16 23 H 0.46 0.03 8.96 -213.43 -1.91 -1.89 16 24 C 0.14 1.03 12.09 84.46 1.02 2.05 16 25 C -0.25 -4.14 6.32 -20.26 -0.13 -4.26 16 26 C 0.04 0.83 9.64 22.85 0.22 1.05 16 27 H 0.25 15.21 8.31 -92.70 -0.77 14.44 16 28 H 0.38 20.85 7.66 -92.71 -0.71 20.14 16 29 H 0.03 1.40 5.30 -2.39 -0.01 1.39 16 30 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 32 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 33 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.06 2.16 5.29 -2.39 -0.01 2.14 16 35 H 0.42 6.42 6.39 -92.70 -0.59 5.83 16 36 H 0.15 1.54 6.27 -2.91 -0.02 1.52 16 37 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 38 H 0.24 -0.77 8.06 -2.91 -0.02 -0.80 16 39 H 0.14 2.68 7.58 -2.91 -0.02 2.65 16 Total: -1.00 -83.25 338.69 -0.13 -83.38 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: -2.09 Total: 22.73 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 5.25 Total: -3.53 kcal Atomic # 7 Polarization: -125.32 SS G_CDS: -5.26 Total: -130.58 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.07 Total: -21.35 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -83.25 -0.13 -83.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497662425.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.680 kcal (2) G-P(sol) polarization free energy of solvation -83.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds