Wall clock time and date at job start Fri Apr 10 2020 20:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86809 * 120.00170 * 2 1 4 4 H 1.48502 * 109.47021 * 270.00067 * 3 2 1 5 5 H 1.48501 * 109.46853 * 29.99852 * 3 2 1 6 6 H 1.48498 * 109.47131 * 149.99897 * 3 2 1 7 7 C 1.37873 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00051 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00204 * 179.97438 * 7 2 1 10 10 N 1.46494 * 109.47114 * 180.02562 * 9 7 2 11 11 C 1.46502 * 120.00129 * 90.00196 * 10 9 7 12 12 C 1.53000 * 109.47332 * 79.87549 * 11 10 9 13 13 C 1.52998 * 117.50088 * 243.74836 * 12 11 10 14 14 C 1.52999 * 117.50088 * 175.08829 * 12 11 10 15 15 C 1.34776 * 119.99844 * 269.99482 * 10 9 7 16 16 O 1.21569 * 120.00240 * 2.06572 * 15 10 9 17 17 C 1.47684 * 120.00036 * 182.05599 * 15 10 9 18 18 C 1.40190 * 120.40824 * 22.36544 * 17 15 10 19 19 N 1.31192 * 121.37733 * 179.97438 * 18 17 15 20 20 C 1.32935 * 121.83927 * 0.02562 * 19 18 17 21 21 N 1.36633 * 133.26414 * 179.97438 * 20 19 18 22 22 H 0.97006 * 125.34173 * 359.95911 * 21 20 19 23 23 N 1.39798 * 109.31911 * 180.02562 * 21 20 19 24 24 C 1.30201 * 110.13087 * 359.97438 * 23 21 20 25 25 C 1.41059 * 120.20798 * 359.97438 * 20 19 18 26 26 C 1.39511 * 120.41408 * 202.08159 * 17 15 10 27 27 H 0.97005 * 119.99567 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47066 * 59.99912 * 9 7 2 29 29 H 1.09003 * 109.47120 * 300.00172 * 9 7 2 30 30 H 1.08998 * 109.46916 * 199.87419 * 11 10 9 31 31 H 1.09000 * 109.46929 * 319.87361 * 11 10 9 32 32 H 1.09002 * 115.55058 * 29.41270 * 12 11 10 33 33 H 1.09006 * 117.49360 * 0.02562 * 13 12 11 34 34 H 1.08993 * 117.50241 * 145.01692 * 13 12 11 35 35 H 1.09002 * 117.49623 * 214.98030 * 14 12 11 36 36 H 1.08998 * 117.49790 * 0.02562 * 14 12 11 37 37 H 1.07997 * 119.30966 * 0.02562 * 18 17 15 38 38 H 1.07994 * 126.20701 * 179.97438 * 24 23 21 39 39 H 1.07998 * 121.02081 * 0.02562 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0000 10 7 3.9998 -2.5752 0.0001 11 6 4.2435 -3.2662 -1.2686 12 6 5.5940 -2.8264 -1.8377 13 6 5.5883 -2.0778 -3.1720 14 6 6.0864 -3.5237 -3.1074 15 6 4.2250 -3.2103 1.1673 16 8 3.9873 -2.6501 2.2198 17 6 4.7602 -4.5867 1.1679 18 6 5.4644 -5.0747 0.0582 19 7 5.9485 -6.2939 0.0386 20 6 5.7964 -7.1254 1.0645 21 7 6.1918 -8.4132 1.2927 22 1 6.6934 -8.9646 0.6718 23 7 5.7587 -8.8122 2.5606 24 6 5.1127 -7.8413 3.1396 25 6 5.0998 -6.7091 2.2183 26 6 4.5765 -5.4155 2.2750 27 1 -0.4850 0.8401 0.0004 28 1 3.8752 -0.6796 0.8894 29 1 3.8746 -0.6808 -0.8905 30 1 4.2537 -4.3429 -1.0997 31 1 3.4526 -3.0167 -1.9759 32 1 6.3425 -2.5355 -1.1006 33 1 4.6224 -1.8982 -3.6441 34 1 6.3333 -1.2947 -3.3129 35 1 7.1590 -3.6913 -3.2058 36 1 5.4481 -4.2955 -3.5375 37 1 5.6122 -4.4332 -0.7980 38 1 4.6669 -7.8688 4.1228 39 1 4.0423 -5.0688 3.1472 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519347953.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:48:45 Heat of formation + Delta-G solvation = 129.420921 kcal Electronic energy + Delta-G solvation = -24005.274274 eV Core-core repulsion = 20530.994083 eV Total energy + Delta-G solvation = -3474.280192 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.76102 -39.90658 -37.60157 -37.49192 -34.64180 -33.23922 -32.59068 -30.80833 -30.64231 -28.31179 -26.73872 -24.40441 -23.64200 -22.38150 -22.13555 -21.83398 -20.89300 -19.12763 -18.39803 -17.73689 -16.95055 -16.72468 -15.87469 -15.58043 -15.12176 -14.90638 -14.61855 -14.31715 -14.16245 -13.97120 -13.46655 -13.25099 -12.96644 -12.68651 -12.33296 -11.76710 -11.73629 -11.59428 -11.45452 -11.24345 -10.96575 -10.83569 -10.59758 -10.43736 -10.12406 -9.95374 -9.80874 -9.54807 -9.18848 -9.11979 -8.60449 -8.55530 -7.83779 -6.09854 -4.08860 0.61785 0.86297 2.18681 2.23059 3.17529 3.26095 3.33872 3.38553 3.52270 3.72164 3.96205 4.12191 4.23449 4.38624 4.44948 4.64689 4.73203 4.85693 4.95399 5.03093 5.14913 5.24092 5.25267 5.40213 5.53528 5.61426 5.67394 5.85957 5.97217 5.97550 5.99503 6.17245 6.28115 6.33518 6.66570 6.86125 6.93860 7.11316 7.22769 7.58572 7.74006 8.10865 8.43787 8.80964 8.94144 9.49997 11.03446 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.004509 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.581488 B = 6208.331326 C = 7393.230758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.873 3.127 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.529 4.529 8 H 0.075 0.925 9 C 0.218 3.782 10 N -0.580 5.580 11 C 0.113 3.887 12 C -0.189 4.189 13 C -0.166 4.166 14 C -0.176 4.176 15 C 0.560 3.440 16 O -0.531 6.531 17 C -0.220 4.220 18 C 0.166 3.834 19 N -0.508 5.508 20 C 0.323 3.677 21 N -0.495 5.495 22 H 0.443 0.557 23 N -0.243 5.243 24 C 0.100 3.900 25 C -0.239 4.239 26 C 0.065 3.935 27 H 0.265 0.735 28 H 0.042 0.958 29 H 0.031 0.969 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.208 0.792 38 H 0.205 0.795 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.482 -12.821 -2.067 18.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.700 3.300 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.568 4.568 8 H 0.093 0.907 9 C 0.098 3.902 10 N -0.309 5.309 11 C -0.011 4.011 12 C -0.209 4.209 13 C -0.203 4.203 14 C -0.214 4.214 15 C 0.346 3.654 16 O -0.408 6.408 17 C -0.227 4.227 18 C -0.002 4.002 19 N -0.223 5.223 20 C 0.083 3.917 21 N -0.213 5.213 22 H 0.289 0.711 23 N -0.056 5.056 24 C -0.100 4.100 25 C -0.249 4.249 26 C 0.036 3.964 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.128 0.872 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.223 0.777 38 H 0.221 0.779 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 14.064 -13.966 -2.084 19.930 hybrid contribution -0.192 1.686 0.215 1.710 sum 13.872 -12.280 -1.869 18.621 Atomic orbital electron populations 1.69896 1.06206 1.26992 1.50417 1.24833 0.94728 0.98879 0.94424 0.86891 0.80674 0.83912 0.78555 1.20060 1.20970 1.18778 1.21308 0.89106 0.94878 1.51478 0.90689 1.19706 0.95730 0.77062 0.97690 1.47725 1.63558 1.15880 1.03755 1.21840 0.94843 0.97153 0.87290 1.22912 0.99702 1.06325 0.91943 1.23031 1.03365 0.94590 0.99309 1.23022 1.01545 0.96210 1.00583 1.17745 0.78660 0.84531 0.84436 1.90768 1.52326 1.67001 1.30704 1.20966 1.07242 0.97533 0.97001 1.24692 0.88039 0.90197 0.97255 1.66927 1.24376 1.04327 1.26677 1.19298 0.93379 0.87501 0.91509 1.45755 1.51280 1.09414 1.14878 0.71126 1.76679 1.14374 1.22707 0.91849 1.25146 0.96700 0.88496 0.99637 1.20458 1.09925 0.97159 0.97390 1.21199 0.89585 0.88796 0.96805 0.92554 0.93959 0.95137 0.88934 0.89169 0.87200 0.88052 0.88821 0.88572 0.88329 0.77664 0.77862 0.82857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 3 Si 0.87 21.02 27.47 -169.99 -4.67 16.35 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 7 C -0.53 -14.77 9.94 -34.44 -0.34 -15.11 16 8 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 9 C 0.22 5.12 4.21 -5.19 -0.02 5.10 16 10 N -0.58 -11.44 2.47 -176.24 -0.44 -11.88 16 11 C 0.11 1.71 5.12 -4.04 -0.02 1.69 16 12 C -0.19 -2.36 4.02 -90.62 -0.36 -2.73 16 13 C -0.17 -1.88 10.18 -26.70 -0.27 -2.15 16 14 C -0.18 -1.73 9.99 -26.69 -0.27 -2.00 16 15 C 0.56 11.23 7.53 -12.40 -0.09 11.14 16 16 O -0.53 -12.65 16.21 5.30 0.09 -12.56 16 17 C -0.22 -3.54 5.63 -104.83 -0.59 -4.13 16 18 C 0.17 2.33 8.70 -17.09 -0.15 2.19 16 19 N -0.51 -7.01 10.37 -12.03 -0.12 -7.14 16 20 C 0.32 4.30 8.47 -156.09 -1.32 2.98 16 21 N -0.50 -5.49 7.33 31.15 0.23 -5.26 16 22 H 0.44 3.67 8.96 -182.82 -1.64 2.04 16 23 N -0.24 -2.72 12.54 31.87 0.40 -2.32 16 24 C 0.10 1.02 12.30 -15.15 -0.19 0.83 16 25 C -0.24 -3.10 6.36 -105.20 -0.67 -3.76 16 26 C 0.06 0.93 9.76 -38.58 -0.38 0.55 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.04 1.07 6.51 -51.93 -0.34 0.74 16 29 H 0.03 0.67 7.50 -51.93 -0.39 0.28 16 30 H 0.09 1.28 4.27 -51.93 -0.22 1.06 16 31 H 0.09 1.43 7.87 -51.93 -0.41 1.02 16 32 H 0.11 1.40 8.13 -51.93 -0.42 0.98 16 33 H 0.10 1.19 8.03 -51.93 -0.42 0.77 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.21 2.63 2.32 -52.49 -0.12 2.50 16 38 H 0.20 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.15 2.05 7.87 -52.49 -0.41 1.64 16 LS Contribution 329.09 15.07 4.96 4.96 Total: -1.00 -34.30 329.09 -9.21 -43.51 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.65 Total: 4.13 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -4.77 Total: -3.39 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.84 Total: -53.00 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.09 Total: -12.56 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.30 -9.21 -43.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519347953.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.931 kcal (2) G-P(sol) polarization free energy of solvation -34.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds