Wall clock time and date at job start Fri Apr 10 2020 20:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99876 * 2 1 4 4 H 1.48499 * 109.47122 * 240.00172 * 3 2 1 5 5 H 1.48496 * 109.47451 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47043 * 120.00142 * 3 2 1 7 7 C 1.37873 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99735 * 185.08660 * 7 2 1 9 9 C 1.50699 * 120.00411 * 5.09607 * 7 2 1 10 10 H 1.08998 * 109.47365 * 185.77190 * 9 7 2 11 11 C 1.50703 * 109.46615 * 305.76806 * 9 7 2 12 12 O 1.21286 * 119.99691 * 120.00415 * 11 9 7 13 13 N 1.34775 * 120.00578 * 299.99953 * 11 9 7 14 14 C 1.46498 * 120.00358 * 179.97438 * 13 11 9 15 15 C 1.52995 * 109.46971 * 180.02562 * 14 13 11 16 16 C 1.50703 * 109.47191 * 180.02562 * 15 14 13 17 17 C 1.35348 * 126.91304 * 274.68845 * 16 15 14 18 18 N 1.33774 * 106.49569 * 179.90060 * 17 16 15 19 19 N 1.28633 * 108.88720 * 0.36800 * 18 17 16 20 20 N 1.28715 * 110.17785 * 359.76361 * 19 18 17 21 21 H 0.96998 * 125.87069 * 180.02562 * 20 19 18 22 22 C 1.50695 * 109.47444 * 65.76830 * 9 7 2 23 23 C 1.38241 * 120.00079 * 355.08466 * 22 9 7 24 24 C 1.38232 * 120.00134 * 180.02562 * 23 22 9 25 25 C 1.38239 * 119.99754 * 359.94899 * 24 23 22 26 26 C 1.38227 * 120.00273 * 0.02562 * 25 24 23 27 27 C 1.38236 * 119.99966 * 175.05931 * 22 9 7 28 28 H 0.96998 * 120.00050 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99437 * 0.02562 * 13 11 9 30 30 H 1.08998 * 109.47133 * 300.00175 * 14 13 11 31 31 H 1.09006 * 109.46805 * 60.00334 * 14 13 11 32 32 H 1.09007 * 109.47260 * 299.99998 * 15 14 13 33 33 H 1.08995 * 109.47701 * 60.00195 * 15 14 13 34 34 H 1.08000 * 126.75172 * 0.03638 * 17 16 15 35 35 H 1.08003 * 119.99372 * 359.97249 * 23 22 9 36 36 H 1.07996 * 119.99817 * 179.97438 * 24 23 22 37 37 H 1.08007 * 119.99351 * 179.72696 * 25 24 23 38 38 H 1.07996 * 119.99876 * 179.97438 * 26 25 24 39 39 H 1.07996 * 120.00272 * 0.02562 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0814 -1.1959 0.0824 9 6 1.2556 -2.4965 -0.1170 10 1 1.9507 -3.3274 0.0030 11 6 0.1994 -2.5662 0.9557 12 8 -0.9693 -2.6736 0.6500 13 7 0.5536 -2.5094 2.2549 14 6 -0.4732 -2.5766 3.2977 15 6 0.1908 -2.4908 4.6734 16 6 -0.8653 -2.5606 5.7462 17 6 -1.5909 -1.5307 6.2408 18 7 -2.4038 -2.0494 7.1679 19 7 -2.1900 -3.3153 7.2479 20 7 -1.2750 -3.6647 6.4127 21 1 -0.9373 -4.5647 6.2832 22 6 0.6015 -2.5805 -1.4721 23 6 0.6632 -1.5041 -2.3373 24 6 0.0628 -1.5809 -3.5800 25 6 -0.5984 -2.7346 -3.9580 26 6 -0.6596 -3.8111 -3.0932 27 6 -0.0596 -3.7341 -1.8501 28 1 -0.4850 0.8400 0.0004 29 1 1.4883 -2.4232 2.4994 30 1 -1.1680 -1.7454 3.1776 31 1 -1.0153 -3.5185 3.2136 32 1 0.8859 -3.3218 4.7938 33 1 0.7327 -1.5489 4.7573 34 1 -1.5277 -0.4943 5.9437 35 1 1.1797 -0.6028 -2.0418 36 1 0.1106 -0.7398 -4.2557 37 1 -1.0712 -2.7929 -4.9273 38 1 -1.1765 -4.7122 -3.3884 39 1 -0.1078 -4.5751 -1.1742 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577706680.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:48:49 Heat of formation + Delta-G solvation = 80.470238 kcal Electronic energy + Delta-G solvation = -23714.430433 eV Core-core repulsion = 20238.027580 eV Total energy + Delta-G solvation = -3476.402853 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.36771 -38.98107 -37.58239 -35.15890 -33.74206 -33.38085 -32.15202 -30.92907 -29.69020 -28.76944 -27.15591 -24.28436 -23.32950 -22.97582 -21.59443 -21.28718 -20.56629 -19.30738 -18.21668 -16.90758 -16.33830 -15.90981 -15.40281 -15.09622 -14.92025 -14.80238 -14.21736 -14.12311 -13.76162 -13.63951 -13.05641 -12.57261 -12.43924 -12.20779 -12.10983 -11.90690 -11.75533 -11.41989 -11.26826 -10.98668 -10.90836 -10.80477 -10.65023 -10.42314 -10.10766 -9.78288 -9.44965 -9.24188 -8.70398 -8.35375 -8.06496 -7.80808 -7.45585 -6.23017 -4.38077 1.45200 2.44911 2.48768 2.55209 2.63460 3.14785 3.23806 3.24725 3.99409 4.14608 4.31191 4.52593 4.69642 4.89929 4.99818 5.02365 5.08950 5.26020 5.47784 5.50903 5.79393 5.88788 5.98839 6.04189 6.09366 6.21146 6.30606 6.53212 6.57807 6.71886 6.76897 6.83352 7.04341 7.17549 7.44463 7.46512 7.57292 7.64430 7.75082 8.09428 8.21510 8.35629 8.54464 8.74790 9.27423 9.68082 10.77688 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.015894 B = 0.004190 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.210208 B = 6681.144547 C = 7886.416275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.072 3.928 3 Si 0.886 3.114 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.056 3.944 10 H 0.056 0.944 11 C 0.557 3.443 12 O -0.547 6.547 13 N -0.738 5.738 14 C 0.134 3.866 15 C -0.060 4.060 16 C 0.003 3.997 17 C -0.044 4.044 18 N -0.267 5.267 19 N -0.088 5.088 20 N -0.390 5.390 21 H 0.447 0.553 22 C -0.018 4.018 23 C -0.060 4.060 24 C -0.148 4.148 25 C -0.143 4.143 26 C -0.143 4.143 27 C -0.114 4.114 28 H 0.268 0.732 29 H 0.396 0.604 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.192 0.808 35 H 0.137 0.863 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.518 -5.525 5.462 8.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.135 4.135 3 Si 0.713 3.287 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.578 4.578 8 H 0.086 0.914 9 C 0.035 3.965 10 H 0.074 0.926 11 C 0.346 3.654 12 O -0.423 6.423 13 N -0.392 5.392 14 C 0.009 3.991 15 C -0.100 4.100 16 C -0.131 4.131 17 C -0.201 4.201 18 N -0.134 5.134 19 N -0.068 5.068 20 N -0.111 5.111 21 H 0.292 0.708 22 C -0.019 4.019 23 C -0.078 4.078 24 C -0.166 4.166 25 C -0.161 4.161 26 C -0.161 4.161 27 C -0.133 4.133 28 H 0.078 0.922 29 H 0.229 0.771 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.121 0.879 34 H 0.209 0.791 35 H 0.154 0.846 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.393 -5.814 6.363 8.731 hybrid contribution 1.587 0.968 -0.774 2.014 sum 2.980 -4.846 5.589 7.975 Atomic orbital electron populations 1.70058 1.05335 1.27324 1.45031 1.25051 0.94892 0.99264 0.94317 0.86747 0.79800 0.83153 0.79043 1.19827 1.21142 1.19994 1.20714 0.93314 0.88921 1.54814 0.91450 1.17901 0.92419 0.98277 0.87923 0.92648 1.20903 0.90237 0.71988 0.82288 1.90547 1.20439 1.49209 1.82069 1.45732 1.09135 1.78630 1.05660 1.20953 0.91805 1.01714 0.84665 1.20391 0.94060 1.05044 0.90502 1.22179 1.03221 0.87135 1.00572 1.23480 0.97163 1.01218 0.98239 1.75083 1.20753 1.00039 1.17564 1.78255 1.06647 1.09422 1.12504 1.45107 1.27673 1.11529 1.26790 0.70792 1.19841 0.94691 0.91954 0.95421 1.21436 0.96207 0.98889 0.91221 1.21076 1.00786 0.97239 0.97545 1.20802 1.01777 0.94549 0.99001 1.20783 1.01970 0.98199 0.95172 1.20874 0.98702 0.98219 0.95467 0.92191 0.77076 0.91604 0.93031 0.89927 0.87890 0.79103 0.84570 0.87944 0.88070 0.87981 0.88100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.81 10.42 55.43 0.58 -21.23 16 2 C 0.07 1.71 3.19 -17.82 -0.06 1.65 16 3 Si 0.89 18.73 29.54 -169.99 -5.02 13.71 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.54 -12.42 7.62 -34.44 -0.26 -12.68 16 8 H 0.07 1.50 7.82 -52.48 -0.41 1.09 16 9 C 0.06 1.25 2.67 -94.08 -0.25 1.00 16 10 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 11 C 0.56 12.42 5.37 -10.98 -0.06 12.36 16 12 O -0.55 -14.25 15.15 5.55 0.08 -14.16 16 13 N -0.74 -12.94 5.46 -60.29 -0.33 -13.27 16 14 C 0.13 2.00 5.66 -4.05 -0.02 1.98 16 15 C -0.06 -0.60 5.90 -27.88 -0.16 -0.77 16 16 C 0.00 0.04 6.56 -82.08 -0.54 -0.50 16 17 C -0.04 -0.55 11.99 -17.74 -0.21 -0.77 16 18 N -0.27 -3.95 12.41 30.23 0.38 -3.58 16 19 N -0.09 -1.20 13.38 60.35 0.81 -0.39 16 20 N -0.39 -4.02 6.98 33.54 0.23 -3.78 16 21 H 0.45 2.88 8.96 -190.40 -1.71 1.18 16 22 C -0.02 -0.42 4.50 -104.62 -0.47 -0.89 16 23 C -0.06 -1.39 8.00 -39.58 -0.32 -1.70 16 24 C -0.15 -3.08 10.05 -39.58 -0.40 -3.48 16 25 C -0.14 -2.76 10.05 -39.58 -0.40 -3.16 16 26 C -0.14 -2.81 10.05 -39.58 -0.40 -3.21 16 27 C -0.11 -2.46 8.74 -39.58 -0.35 -2.80 16 28 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.40 6.05 8.36 -40.82 -0.34 5.71 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.64 8.14 -51.92 -0.42 0.21 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.19 2.01 8.06 -52.49 -0.42 1.59 16 35 H 0.14 3.32 4.97 -52.48 -0.26 3.06 16 36 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 37 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 38 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.10 2.04 8.06 -52.49 -0.42 1.61 16 LS Contribution 334.39 15.07 5.04 5.04 Total: -1.00 -31.59 334.39 -8.21 -39.80 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -6.08 Total: 10.83 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -3.89 Total: -12.96 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 1.66 Total: -42.25 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.08 Total: -14.16 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.71 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.59 -8.21 -39.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577706680.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.265 kcal (2) G-P(sol) polarization free energy of solvation -31.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds