Wall clock time and date at job start Fri Apr 10 2020 20:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99505 * 2 1 4 4 H 1.48500 * 109.46818 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47264 * 299.99572 * 3 2 1 6 6 H 1.48491 * 109.47280 * 60.00052 * 3 2 1 7 7 C 1.37873 * 120.00455 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00138 * 186.39112 * 7 2 1 9 9 C 1.50706 * 119.99842 * 6.38798 * 7 2 1 10 10 H 1.09000 * 109.47312 * 333.94637 * 9 7 2 11 11 C 1.50700 * 109.47263 * 213.94132 * 9 7 2 12 12 O 1.21276 * 119.99984 * 240.00562 * 11 9 7 13 13 N 1.34774 * 120.00096 * 59.99848 * 11 9 7 14 14 C 1.46501 * 120.00326 * 180.02562 * 13 11 9 15 15 C 1.52992 * 109.47330 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.47099 * 179.97438 * 15 14 13 17 17 C 1.35352 * 126.91318 * 274.95550 * 16 15 14 18 18 N 1.33770 * 106.49741 * 180.02562 * 17 16 15 19 19 N 1.28636 * 108.88572 * 359.97438 * 18 17 16 20 20 N 1.28715 * 110.17743 * 0.02562 * 19 18 17 21 21 H 0.97003 * 125.86763 * 179.72760 * 20 19 18 22 22 C 1.50700 * 109.46636 * 93.94220 * 9 7 2 23 23 C 1.38237 * 120.00214 * 53.85231 * 22 9 7 24 24 C 1.38239 * 119.99801 * 179.80749 * 23 22 9 25 25 C 1.38229 * 120.00017 * 0.39877 * 24 23 22 26 26 C 1.38240 * 120.00252 * 359.85054 * 25 24 23 27 27 C 1.38232 * 119.99806 * 359.96064 * 26 25 24 28 28 H 0.96997 * 120.00855 * 0.02562 * 1 2 3 29 29 H 0.97002 * 119.99634 * 0.02562 * 13 11 9 30 30 H 1.08993 * 109.46785 * 59.99818 * 14 13 11 31 31 H 1.09005 * 109.46564 * 300.00209 * 14 13 11 32 32 H 1.09004 * 109.47350 * 59.99700 * 15 14 13 33 33 H 1.09001 * 109.47028 * 300.00184 * 15 14 13 34 34 H 1.07997 * 126.75013 * 0.05272 * 17 16 15 35 35 H 1.07999 * 119.99771 * 359.97438 * 23 22 9 36 36 H 1.07998 * 119.99449 * 180.22784 * 24 23 22 37 37 H 1.08002 * 119.99859 * 179.83707 * 25 24 23 38 38 H 1.07998 * 119.99849 * 179.97438 * 26 25 24 39 39 H 1.07996 * 119.99992 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0795 -1.1969 0.1036 9 6 1.2581 -2.4950 -0.1463 10 1 0.2376 -2.3710 0.2159 11 6 1.9505 -3.5644 0.6587 12 8 2.3792 -4.5561 0.1078 13 7 2.0935 -3.4186 1.9909 14 6 2.7671 -4.4578 2.7735 15 6 2.7948 -4.0489 4.2475 16 6 3.4872 -5.1183 5.0526 17 6 2.9289 -6.2402 5.5641 18 7 3.9065 -6.8945 6.2010 19 7 4.9979 -6.2226 6.0907 20 7 4.7919 -5.1500 5.4097 21 1 5.4569 -4.4777 5.1931 22 6 1.2303 -2.8981 -1.5982 23 6 2.4101 -2.9905 -2.3126 24 6 2.3848 -3.3641 -3.6433 25 6 1.1791 -3.6373 -4.2617 26 6 -0.0011 -3.5398 -3.5487 27 6 0.0244 -3.1700 -2.2170 28 1 -0.4851 0.8399 -0.0004 29 1 1.7504 -2.6255 2.4315 30 1 3.7876 -4.5814 2.4111 31 1 2.2276 -5.3991 2.6680 32 1 1.7741 -3.9256 4.6096 33 1 3.3340 -3.1075 4.3533 34 1 1.8973 -6.5470 5.4751 35 1 3.3518 -2.7735 -1.8304 36 1 3.3069 -3.4399 -4.2004 37 1 1.1592 -3.9266 -5.3021 38 1 -0.9431 -3.7529 -4.0320 39 1 -0.8976 -3.0935 -1.6600 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577706681.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:48:52 Heat of formation + Delta-G solvation = 68.369208 kcal Electronic energy + Delta-G solvation = -23199.672722 eV Core-core repulsion = 19722.745129 eV Total energy + Delta-G solvation = -3476.927593 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.46489 -39.23802 -37.84456 -35.41972 -33.72521 -33.49469 -32.38348 -31.14993 -29.98530 -28.94821 -27.23918 -24.36922 -23.40823 -23.07917 -21.72970 -21.63258 -20.85050 -19.45998 -18.29545 -16.85896 -16.48555 -16.04477 -15.93720 -15.38680 -15.21549 -14.58535 -14.45574 -14.19479 -13.98102 -13.80171 -13.25439 -12.91866 -12.51798 -12.34401 -12.14536 -12.00029 -11.75230 -11.67933 -11.42726 -11.14894 -11.08655 -10.99790 -10.74992 -10.46051 -10.33171 -10.06068 -9.51222 -9.36285 -8.87242 -8.67945 -8.47991 -7.99547 -7.67085 -6.36164 -4.41538 1.35619 2.32397 2.34999 2.38662 2.55136 3.11653 3.22121 3.24121 3.62384 3.80167 4.21037 4.37339 4.56025 4.75867 4.80439 4.87955 5.02344 5.13378 5.34329 5.38223 5.68226 5.74095 5.82993 5.88596 5.91183 5.96288 6.15365 6.27953 6.44751 6.54391 6.63085 6.81473 6.92134 7.04701 7.14119 7.32429 7.39351 7.54792 7.69100 7.89688 8.00754 8.25808 8.26560 8.62942 9.14092 9.24825 10.72447 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.003912 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.190761 B = 7156.619709 C = 8526.061278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.076 3.924 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.062 0.938 9 C 0.048 3.952 10 H 0.093 0.907 11 C 0.529 3.471 12 O -0.566 6.566 13 N -0.732 5.732 14 C 0.127 3.873 15 C -0.062 4.062 16 C 0.001 3.999 17 C -0.045 4.045 18 N -0.267 5.267 19 N -0.085 5.085 20 N -0.388 5.388 21 H 0.448 0.552 22 C -0.013 4.013 23 C -0.085 4.085 24 C -0.135 4.135 25 C -0.148 4.148 26 C -0.132 4.132 27 C -0.120 4.120 28 H 0.267 0.733 29 H 0.407 0.593 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.192 0.808 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.620 -3.732 5.733 7.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.129 4.129 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.027 3.973 10 H 0.111 0.889 11 C 0.318 3.682 12 O -0.444 6.444 13 N -0.385 5.385 14 C 0.002 3.998 15 C -0.102 4.102 16 C -0.133 4.133 17 C -0.202 4.202 18 N -0.134 5.134 19 N -0.066 5.066 20 N -0.109 5.109 21 H 0.294 0.706 22 C -0.014 4.014 23 C -0.103 4.103 24 C -0.153 4.153 25 C -0.166 4.166 26 C -0.150 4.150 27 C -0.138 4.138 28 H 0.077 0.923 29 H 0.242 0.758 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.106 0.894 34 H 0.209 0.791 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.717 -5.293 6.160 8.932 hybrid contribution -0.071 2.506 -0.635 2.587 sum 3.646 -2.787 5.525 7.182 Atomic orbital electron populations 1.69877 1.06014 1.27446 1.48057 1.24948 0.94871 0.99435 0.93654 0.86466 0.80221 0.83093 0.77900 1.19547 1.20647 1.20789 1.20697 0.93440 0.88624 1.52531 0.91965 1.18145 0.99835 0.91717 0.87566 0.88906 1.21653 0.77933 0.87138 0.81432 1.90597 1.50812 1.32161 1.70873 1.45881 1.61131 1.23215 1.08281 1.21093 0.98245 0.92472 0.88034 1.20379 1.01543 0.94800 0.93435 1.22143 0.85186 1.01301 1.04683 1.23466 1.01428 0.93460 1.01850 1.75093 0.95908 1.23899 1.18547 1.78280 1.20478 0.94643 1.13169 1.45142 1.09699 1.19131 1.36959 0.70625 1.20049 0.92109 0.92058 0.97157 1.20824 0.98305 0.97926 0.93259 1.20965 0.97073 1.01813 0.95423 1.20810 0.93050 1.03857 0.98913 1.20913 0.97257 1.01950 0.94869 1.21006 0.97825 1.00281 0.94705 0.92294 0.75767 0.92328 0.91526 0.87783 0.89406 0.79085 0.87145 0.87576 0.87671 0.87499 0.86934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.07 12.78 55.43 0.71 -21.37 16 2 C 0.08 1.83 5.45 -17.82 -0.10 1.73 16 3 Si 0.90 19.05 29.54 -169.99 -5.02 14.03 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 6 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.52 -12.16 7.46 -34.44 -0.26 -12.41 16 8 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 9 C 0.05 1.09 2.44 -94.07 -0.23 0.86 16 10 H 0.09 2.21 7.00 -51.93 -0.36 1.84 16 11 C 0.53 10.95 7.04 -10.99 -0.08 10.88 16 12 O -0.57 -13.16 15.42 5.56 0.09 -13.08 16 13 N -0.73 -11.72 5.46 -60.30 -0.33 -12.05 16 14 C 0.13 1.62 5.66 -4.05 -0.02 1.60 16 15 C -0.06 -0.53 5.90 -27.89 -0.16 -0.70 16 16 C 0.00 0.01 6.56 -82.09 -0.54 -0.52 16 17 C -0.04 -0.49 11.99 -17.74 -0.21 -0.70 16 18 N -0.27 -3.61 12.41 30.23 0.38 -3.24 16 19 N -0.09 -1.08 13.38 60.35 0.81 -0.28 16 20 N -0.39 -3.69 6.98 33.54 0.23 -3.45 16 21 H 0.45 2.71 8.96 -190.40 -1.71 1.01 16 22 C -0.01 -0.29 4.30 -104.62 -0.45 -0.74 16 23 C -0.08 -1.86 8.31 -39.58 -0.33 -2.19 16 24 C -0.13 -2.60 10.05 -39.58 -0.40 -3.00 16 25 C -0.15 -2.70 10.05 -39.58 -0.40 -3.09 16 26 C -0.13 -2.48 10.05 -39.58 -0.40 -2.88 16 27 C -0.12 -2.54 9.67 -39.58 -0.38 -2.93 16 28 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 29 H 0.41 6.03 8.36 -40.82 -0.34 5.69 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.19 1.56 8.06 -52.49 -0.42 1.13 16 35 H 0.11 2.44 7.89 -52.49 -0.41 2.02 16 36 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.11 2.28 7.95 -52.49 -0.42 1.87 16 LS Contribution 343.31 15.07 5.17 5.17 Total: -1.00 -30.88 343.31 -8.09 -38.97 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -6.17 Total: 9.38 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -3.95 Total: -14.10 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 1.80 Total: -40.38 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.08 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.03 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.88 -8.09 -38.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577706681.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.337 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds