Wall clock time and date at job start Fri Apr 10 2020 20:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00149 * 2 1 4 4 H 1.48494 * 109.47187 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46726 * 300.00148 * 3 2 1 6 6 H 1.48499 * 109.47150 * 60.00189 * 3 2 1 7 7 C 1.37879 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00353 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99811 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46894 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46714 * 180.02562 * 10 9 7 12 12 O 1.45201 * 109.46884 * 180.02562 * 11 10 9 13 13 C 1.34222 * 117.00137 * 179.97438 * 12 11 10 14 14 O 1.20833 * 119.99852 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00432 * 179.71953 * 13 12 11 16 16 H 1.09003 * 109.87151 * 304.58331 * 15 13 12 17 17 C 1.54108 * 109.87699 * 65.58194 * 15 13 12 18 18 C 1.54807 * 104.18780 * 121.45343 * 17 15 13 19 19 C 1.54998 * 102.09431 * 20.88209 * 18 17 15 20 20 H 1.09002 * 110.61262 * 81.47032 * 19 18 17 21 21 C 1.52995 * 110.62127 * 204.47287 * 19 18 17 22 22 C 1.53004 * 109.46882 * 184.99980 * 21 19 18 23 23 C 1.50704 * 109.46645 * 180.02562 * 22 21 19 24 24 O 1.20823 * 120.00407 * 359.97438 * 23 22 21 25 25 O 1.34227 * 119.99793 * 179.97438 * 23 22 21 26 26 O 1.43743 * 109.88140 * 183.56861 * 15 13 12 27 27 H 0.96998 * 120.00042 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.46698 * 60.00396 * 9 7 2 29 29 H 1.08997 * 109.46779 * 300.00515 * 9 7 2 30 30 H 1.08997 * 109.46906 * 60.00240 * 10 9 7 31 31 H 1.08997 * 109.47126 * 299.99992 * 10 9 7 32 32 H 1.08997 * 109.46911 * 60.00080 * 11 10 9 33 33 H 1.08997 * 109.46745 * 300.00089 * 11 10 9 34 34 H 1.08997 * 110.49286 * 240.13438 * 17 15 13 35 35 H 1.09004 * 110.48116 * 2.64713 * 17 15 13 36 36 H 1.09003 * 110.91052 * 139.08205 * 18 17 15 37 37 H 1.09002 * 110.91284 * 262.64875 * 18 17 15 38 38 H 1.08995 * 109.47194 * 305.00331 * 21 19 18 39 39 H 1.09001 * 109.47225 * 65.00586 * 21 19 18 40 40 H 1.09005 * 109.47194 * 299.99722 * 22 21 19 41 41 H 1.08993 * 109.47011 * 60.00394 * 22 21 19 42 42 H 0.96695 * 117.00506 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 8 2.4238 -6.0908 -0.0006 13 6 1.9108 -7.3311 -0.0005 14 8 0.7129 -7.4894 -0.0014 15 6 2.8287 -8.5262 -0.0063 16 1 3.5123 -8.4642 -0.8530 17 6 3.6284 -8.5790 1.3100 18 6 3.2633 -9.9537 1.9210 19 6 2.7594 -10.7364 0.6816 20 1 3.5989 -11.1361 0.1128 21 6 1.8089 -11.8588 1.1030 22 6 1.4263 -12.6903 -0.1231 23 6 0.4896 -13.7955 0.2920 24 8 0.1621 -13.9070 1.4496 25 8 0.0192 -14.6560 -0.6245 26 8 2.0561 -9.7355 -0.0892 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5570 0.8896 30 1 2.8719 -3.6043 0.8895 31 1 2.8719 -3.6043 -0.8905 32 1 0.8539 -5.0446 -0.8914 33 1 0.8533 -5.0450 0.8886 34 1 4.6982 -8.5229 1.1090 35 1 3.3231 -7.7707 1.9745 36 1 4.1417 -10.4331 2.3530 37 1 2.4731 -9.8514 2.6648 38 1 2.3028 -12.4973 1.8354 39 1 0.9103 -11.4275 1.5443 40 1 0.9323 -12.0517 -0.8554 41 1 2.3248 -13.1216 -0.5643 42 1 -0.5784 -15.3484 -0.3107 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065472.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:03 Heat of formation + Delta-G solvation = -249.670554 kcal Electronic energy + Delta-G solvation = -23598.160391 eV Core-core repulsion = 19735.547137 eV Total energy + Delta-G solvation = -3862.613254 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.85530 -40.52486 -39.27229 -36.61202 -36.36362 -34.21908 -34.00465 -32.58403 -31.71225 -29.88936 -27.22360 -25.89008 -23.53094 -22.74543 -21.81209 -21.03494 -20.75686 -20.31860 -18.48570 -17.66294 -17.28543 -17.01390 -16.63622 -16.48187 -16.18597 -16.02058 -15.39824 -14.48175 -14.35727 -14.20487 -13.95147 -13.88631 -13.61429 -13.19681 -12.44958 -12.28805 -12.20219 -12.17359 -11.98299 -11.92699 -11.80933 -11.53789 -11.41428 -11.23385 -10.99596 -10.93361 -10.66579 -10.63437 -10.48666 -10.40564 -9.97600 -9.74334 -9.49230 -9.16047 -8.40320 -6.04680 -4.07825 1.82582 2.26855 2.48739 2.63550 3.29212 3.36627 3.40704 3.57662 4.09158 4.21191 4.41347 4.43959 4.46941 4.58729 4.68359 4.77023 4.88192 5.04476 5.08827 5.18969 5.25565 5.31321 5.39829 5.50512 5.55984 5.59162 5.60801 5.65896 5.77196 5.98862 6.11410 6.36281 6.49241 6.51898 6.82191 6.96349 7.49395 7.59199 7.69784 7.91564 7.93942 8.34473 8.98699 9.56568 11.06782 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.037113 B = 0.002022 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.261809 B =13841.996149 C =14268.590607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.023 3.977 10 C -0.108 4.108 11 C 0.069 3.931 12 O -0.356 6.356 13 C 0.453 3.547 14 O -0.492 6.492 15 C 0.089 3.911 16 H 0.109 0.891 17 C -0.143 4.143 18 C -0.150 4.150 19 C 0.074 3.926 20 H 0.081 0.919 21 C -0.103 4.103 22 C -0.114 4.114 23 C 0.479 3.521 24 O -0.517 6.517 25 O -0.519 6.519 26 O -0.345 6.345 27 H 0.261 0.739 28 H 0.020 0.980 29 H 0.019 0.981 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.968 -28.546 0.627 29.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.004 4.004 12 O -0.273 6.273 13 C 0.294 3.706 14 O -0.378 6.378 15 C 0.030 3.970 16 H 0.127 0.873 17 C -0.181 4.181 18 C -0.187 4.187 19 C 0.017 3.983 20 H 0.099 0.901 21 C -0.140 4.140 22 C -0.152 4.152 23 C 0.322 3.678 24 O -0.406 6.406 25 O -0.331 6.331 26 O -0.265 6.265 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.133 0.867 41 H 0.125 0.875 42 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 7.409 -28.175 0.692 29.142 hybrid contribution -0.085 0.596 0.231 0.645 sum 7.324 -27.579 0.923 28.550 Atomic orbital electron populations 1.69975 1.06089 1.26673 1.50576 1.25043 0.94890 0.99406 0.95213 0.86484 0.80065 0.83541 0.77606 1.19674 1.20973 1.20975 1.21207 0.93154 0.90643 1.50921 0.92352 1.19065 0.93861 0.90754 0.97733 1.21769 0.99934 0.90887 1.01991 1.23542 0.91206 0.83378 1.02269 1.86462 1.42758 1.14781 1.83328 1.23332 0.88569 0.85024 0.73665 1.90683 1.16693 1.86654 1.43816 1.22138 0.90801 0.83365 1.00723 0.87343 1.22891 1.01170 0.98935 0.95101 1.23197 1.02575 0.94768 0.98207 1.23309 0.94303 0.89339 0.91392 0.90088 1.21484 1.00942 0.95149 0.96441 1.21394 0.98683 0.93895 1.01180 1.23598 0.79269 0.81648 0.83291 1.90737 1.57178 1.72196 1.20458 1.84545 1.61994 1.42660 1.43880 1.89041 1.47463 1.18236 1.71720 0.92928 0.96189 0.96217 0.92112 0.92086 0.91414 0.91480 0.88788 0.89319 0.89269 0.89778 0.89243 0.89544 0.86650 0.87506 0.73137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.22 5.53 -26.73 -0.15 -2.37 16 11 C 0.07 1.27 5.47 37.16 0.20 1.48 16 12 O -0.36 -5.84 10.22 -39.24 -0.40 -6.24 16 13 C 0.45 7.03 7.06 36.00 0.25 7.28 16 14 O -0.49 -9.39 16.27 -25.39 -0.41 -9.81 16 15 C 0.09 0.96 3.95 -27.31 -0.11 0.85 16 16 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 17 C -0.14 -1.17 6.63 -25.20 -0.17 -1.33 16 18 C -0.15 -1.02 6.59 -24.72 -0.16 -1.18 16 19 C 0.07 0.53 3.29 -25.68 -0.08 0.45 16 20 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 21 C -0.10 -0.74 4.26 -26.73 -0.11 -0.85 16 22 C -0.11 -0.73 5.76 -27.88 -0.16 -0.89 16 23 C 0.48 3.87 8.33 36.01 0.30 4.17 16 24 O -0.52 -5.85 16.74 -18.75 -0.31 -6.16 16 25 O -0.52 -3.18 13.42 -39.25 -0.53 -3.70 16 26 O -0.35 -3.90 10.31 -54.85 -0.57 -4.47 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 33 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.83 7.69 -51.93 -0.40 0.44 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.65 8.06 -51.93 -0.42 0.23 16 38 H 0.09 0.54 8.10 -51.93 -0.42 0.12 16 39 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 40 H 0.12 0.81 8.06 -51.93 -0.42 0.39 16 41 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.41 0.90 9.10 45.56 0.41 1.32 16 LS Contribution 362.23 15.07 5.46 5.46 Total: -1.00 -35.80 362.23 -7.64 -43.44 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -5.85 Total: -3.50 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -0.74 Total: -5.39 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 0.74 Total: -26.09 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -2.22 Total: -30.39 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.80 -7.64 -43.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065472.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.233 kcal (2) G-P(sol) polarization free energy of solvation -35.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds