Wall clock time and date at job start Fri Apr 10 2020 20:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00149 * 2 1 4 4 H 1.48494 * 109.47187 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46726 * 300.00148 * 3 2 1 6 6 H 1.48499 * 109.47150 * 60.00189 * 3 2 1 7 7 C 1.37879 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00353 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99811 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46894 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46714 * 180.02562 * 10 9 7 12 12 O 1.45201 * 109.46884 * 180.02562 * 11 10 9 13 13 C 1.34222 * 117.00137 * 179.97438 * 12 11 10 14 14 O 1.20833 * 119.99852 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00432 * 179.71953 * 13 12 11 16 16 H 1.09003 * 109.87151 * 304.58331 * 15 13 12 17 17 C 1.54108 * 109.87699 * 65.58194 * 15 13 12 18 18 C 1.54807 * 104.18780 * 121.45343 * 17 15 13 19 19 C 1.54998 * 102.09431 * 20.88209 * 18 17 15 20 20 H 1.09002 * 110.61262 * 81.47032 * 19 18 17 21 21 C 1.52995 * 110.62127 * 204.47287 * 19 18 17 22 22 C 1.53004 * 109.46882 * 184.99980 * 21 19 18 23 23 C 1.50704 * 109.46645 * 180.02562 * 22 21 19 24 24 O 1.20823 * 120.00407 * 359.97438 * 23 22 21 25 25 O 1.34227 * 119.99793 * 179.97438 * 23 22 21 26 26 O 1.43743 * 109.88140 * 183.56861 * 15 13 12 27 27 H 0.96998 * 120.00042 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.46698 * 60.00396 * 9 7 2 29 29 H 1.08997 * 109.46779 * 300.00515 * 9 7 2 30 30 H 1.08997 * 109.46906 * 60.00240 * 10 9 7 31 31 H 1.08997 * 109.47126 * 299.99992 * 10 9 7 32 32 H 1.08997 * 109.46911 * 60.00080 * 11 10 9 33 33 H 1.08997 * 109.46745 * 300.00089 * 11 10 9 34 34 H 1.08997 * 110.49286 * 240.13438 * 17 15 13 35 35 H 1.09004 * 110.48116 * 2.64713 * 17 15 13 36 36 H 1.09003 * 110.91052 * 139.08205 * 18 17 15 37 37 H 1.09002 * 110.91284 * 262.64875 * 18 17 15 38 38 H 1.08995 * 109.47194 * 305.00331 * 21 19 18 39 39 H 1.09001 * 109.47225 * 65.00586 * 21 19 18 40 40 H 1.09005 * 109.47194 * 299.99722 * 22 21 19 41 41 H 1.08993 * 109.47011 * 60.00394 * 22 21 19 42 42 H 0.96695 * 117.00506 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 8 2.4238 -6.0908 -0.0006 13 6 1.9108 -7.3311 -0.0005 14 8 0.7129 -7.4894 -0.0014 15 6 2.8287 -8.5262 -0.0063 16 1 3.5123 -8.4642 -0.8530 17 6 3.6284 -8.5790 1.3100 18 6 3.2633 -9.9537 1.9210 19 6 2.7594 -10.7364 0.6816 20 1 3.5989 -11.1361 0.1128 21 6 1.8089 -11.8588 1.1030 22 6 1.4263 -12.6903 -0.1231 23 6 0.4896 -13.7955 0.2920 24 8 0.1621 -13.9070 1.4496 25 8 0.0192 -14.6560 -0.6245 26 8 2.0561 -9.7355 -0.0892 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5570 0.8896 30 1 2.8719 -3.6043 0.8895 31 1 2.8719 -3.6043 -0.8905 32 1 0.8539 -5.0446 -0.8914 33 1 0.8533 -5.0450 0.8886 34 1 4.6982 -8.5229 1.1090 35 1 3.3231 -7.7707 1.9745 36 1 4.1417 -10.4331 2.3530 37 1 2.4731 -9.8514 2.6648 38 1 2.3028 -12.4973 1.8354 39 1 0.9103 -11.4275 1.5443 40 1 0.9323 -12.0517 -0.8554 41 1 2.3248 -13.1216 -0.5643 42 1 -0.5784 -15.3484 -0.3107 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601065472.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:02 Heat of formation + Delta-G solvation = -272.919055 kcal Electronic energy + Delta-G solvation = -23599.168521 eV Core-core repulsion = 19735.547137 eV Total energy + Delta-G solvation = -3863.621384 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.86371 -41.24781 -40.19232 -37.79456 -37.17957 -35.95851 -34.83141 -33.76087 -33.16974 -30.68499 -28.95862 -26.80025 -25.15507 -23.68062 -22.40162 -22.18775 -21.86276 -21.56587 -19.12120 -18.82493 -18.55347 -18.03766 -17.83488 -17.59206 -17.19354 -16.90063 -16.51621 -16.30086 -15.53162 -15.25918 -14.76090 -14.51284 -14.45204 -14.21651 -14.05278 -13.88917 -13.76423 -13.05845 -12.86253 -12.79022 -12.69168 -12.55534 -12.50961 -12.38043 -12.14227 -12.11371 -12.04672 -11.87433 -11.66027 -11.58467 -11.44725 -11.36024 -11.22739 -10.74994 -10.58856 -8.22368 -6.34099 1.05738 1.21311 1.34900 1.41995 1.42372 1.55978 2.16168 2.40908 2.82884 3.11644 3.38342 3.54032 3.71214 3.83003 3.96454 3.99092 4.03521 4.09009 4.17593 4.28575 4.38051 4.46792 4.54595 4.68921 4.75078 4.78042 4.83610 4.90821 4.97911 5.01971 5.06649 5.08782 5.22932 5.36835 5.49856 5.62327 5.63107 5.76643 5.79419 6.17984 6.64905 6.82380 6.98876 7.35637 8.90138 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.037113 B = 0.002022 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.261809 B =13841.996149 C =14268.590607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.971 3.029 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.024 3.976 10 C -0.092 4.092 11 C 0.078 3.922 12 O -0.350 6.350 13 C 0.448 3.552 14 O -0.536 6.536 15 C 0.093 3.907 16 H 0.142 0.858 17 C -0.140 4.140 18 C -0.148 4.148 19 C 0.073 3.927 20 H 0.118 0.882 21 C -0.101 4.101 22 C -0.111 4.111 23 C 0.482 3.518 24 O -0.557 6.557 25 O -0.516 6.516 26 O -0.375 6.375 27 H 0.264 0.736 28 H -0.004 1.004 29 H -0.005 1.005 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.128 0.872 35 H 0.070 0.930 36 H 0.122 0.878 37 H 0.064 0.936 38 H 0.103 0.897 39 H 0.052 0.948 40 H 0.108 0.892 41 H 0.141 0.859 42 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.120 -29.509 0.206 31.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.795 3.205 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.013 4.013 10 C -0.129 4.129 11 C 0.004 3.996 12 O -0.266 6.266 13 C 0.292 3.708 14 O -0.425 6.425 15 C 0.034 3.966 16 H 0.159 0.841 17 C -0.178 4.178 18 C -0.185 4.185 19 C 0.016 3.984 20 H 0.136 0.864 21 C -0.138 4.138 22 C -0.148 4.148 23 C 0.326 3.674 24 O -0.449 6.449 25 O -0.330 6.330 26 O -0.295 6.295 27 H 0.073 0.927 28 H 0.014 0.986 29 H 0.014 0.986 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.147 0.853 35 H 0.089 0.911 36 H 0.140 0.860 37 H 0.083 0.917 38 H 0.121 0.879 39 H 0.071 0.929 40 H 0.127 0.873 41 H 0.158 0.842 42 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 10.580 -29.175 0.258 31.035 hybrid contribution -1.134 0.780 0.349 1.420 sum 9.446 -28.395 0.606 29.931 Atomic orbital electron populations 1.70113 1.07956 1.27876 1.51563 1.26051 0.95806 1.03668 0.94636 0.85307 0.79167 0.78323 0.77689 1.18165 1.20468 1.20472 1.21657 0.93830 0.91728 1.50670 0.91421 1.18956 0.94335 0.92659 0.95379 1.21453 0.98666 0.89961 1.02843 1.23152 0.91060 0.83768 1.01616 1.86452 1.41766 1.14970 1.83431 1.24570 0.88967 0.85513 0.71749 1.90665 1.18913 1.86985 1.45978 1.22430 0.89706 0.81018 1.03472 0.84111 1.22975 1.02574 0.98984 0.93269 1.23238 1.03316 0.94271 0.97686 1.23598 0.94793 0.88347 0.91615 0.86397 1.21455 0.99831 0.95496 0.97051 1.21451 0.99595 0.93205 1.00599 1.23942 0.78846 0.81797 0.82784 1.90725 1.58709 1.73351 1.22097 1.84515 1.62160 1.42914 1.43381 1.89026 1.49018 1.18967 1.72496 0.92706 0.98605 0.98642 0.91146 0.91137 0.92157 0.92260 0.85346 0.91143 0.85979 0.91703 0.87892 0.92904 0.87347 0.84165 0.71278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.19 13.29 21.45 0.28 -56.91 16 2 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 3 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.54 -30.52 9.11 25.60 0.23 -30.29 16 8 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.09 -3.77 5.53 30.60 0.17 -3.60 16 11 C 0.08 2.93 5.47 71.98 0.39 3.32 16 12 O -0.35 -11.27 10.22 -51.34 -0.52 -11.79 16 13 C 0.45 13.82 7.06 71.23 0.50 14.32 16 14 O -0.54 -21.15 16.27 28.29 0.46 -20.69 16 15 C 0.09 1.82 3.95 30.22 0.12 1.93 16 16 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 17 C -0.14 -1.91 6.63 31.59 0.21 -1.70 16 18 C -0.15 -1.63 6.59 31.89 0.21 -1.42 16 19 C 0.07 0.86 3.29 31.28 0.10 0.96 16 20 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 21 C -0.10 -1.34 4.26 30.59 0.13 -1.21 16 22 C -0.11 -1.24 5.76 29.85 0.17 -1.07 16 23 C 0.48 7.42 8.33 71.24 0.59 8.02 16 24 O -0.56 -12.71 16.74 21.97 0.37 -12.34 16 25 O -0.52 -5.69 13.42 -51.38 -0.69 -6.38 16 26 O -0.38 -7.97 10.31 -130.22 -1.34 -9.32 16 27 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 28 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 30 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.06 2.35 8.13 -2.39 -0.02 2.33 16 33 H 0.06 2.31 8.13 -2.39 -0.02 2.29 16 34 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 1.23 7.69 -2.38 -0.02 1.22 16 36 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.06 0.97 8.06 -2.39 -0.02 0.95 16 38 H 0.10 1.08 8.10 -2.39 -0.02 1.06 16 39 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 40 H 0.11 1.41 8.06 -2.38 -0.02 1.39 16 41 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.43 1.44 9.10 -74.06 -0.67 0.77 16 Total: -1.00 -80.12 362.23 4.37 -75.75 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: 0.34 Total: 4.81 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 3.45 Total: -9.08 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.28 Total: -56.91 kcal Atomic # 8 Polarization: -58.78 SS G_CDS: -1.73 Total: -60.51 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -80.12 4.37 -75.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065472.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.170 kcal (2) G-P(sol) polarization free energy of solvation -80.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -272.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds