Wall clock time and date at job start Fri Apr 10 2020 20:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 299.99948 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99929 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 O 1.42895 * 109.47147 * 180.02562 * 9 7 2 11 11 C 1.42901 * 113.99948 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47084 * 179.97438 * 11 10 9 13 13 O 1.45200 * 109.46957 * 65.00223 * 12 11 10 14 14 C 1.34235 * 116.99845 * 179.97438 * 13 12 11 15 15 O 1.20824 * 120.00059 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99644 * 179.97438 * 14 13 12 17 17 H 1.09002 * 109.47055 * 299.99697 * 16 14 13 18 18 C 1.53005 * 109.47274 * 60.00177 * 16 14 13 19 19 C 1.53002 * 109.47007 * 179.97438 * 18 16 14 20 20 C 1.52999 * 109.46845 * 299.99564 * 19 18 16 21 21 C 1.53005 * 109.47287 * 60.00607 * 20 19 18 22 22 H 1.09002 * 109.47471 * 59.99471 * 21 20 19 23 23 C 1.50697 * 109.47337 * 179.97438 * 21 20 19 24 24 O 1.20828 * 120.00056 * 119.99526 * 23 21 20 25 25 O 1.34230 * 120.00110 * 299.99871 * 23 21 20 26 26 C 1.53002 * 109.46683 * 299.99492 * 21 20 19 27 27 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 29 29 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 30 30 H 1.08995 * 109.47354 * 300.00131 * 11 10 9 31 31 H 1.09003 * 109.47182 * 59.99587 * 11 10 9 32 32 H 1.09001 * 109.46944 * 185.00182 * 12 11 10 33 33 H 1.08998 * 109.47273 * 305.00092 * 12 11 10 34 34 H 1.09001 * 109.46655 * 299.99866 * 18 16 14 35 35 H 1.09003 * 109.46950 * 59.99780 * 18 16 14 36 36 H 1.08992 * 109.46815 * 179.97438 * 19 18 16 37 37 H 1.08992 * 109.47180 * 59.99687 * 19 18 16 38 38 H 1.09003 * 109.47561 * 300.00448 * 20 19 18 39 39 H 1.08997 * 109.47141 * 179.97438 * 20 19 18 40 40 H 0.96698 * 117.00350 * 180.02562 * 25 23 21 41 41 H 1.09001 * 109.47608 * 300.00450 * 26 21 20 42 42 H 1.09001 * 109.47384 * 179.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 8 2.1796 -3.5853 -0.0015 11 6 1.5650 -4.8754 -0.0019 12 6 2.6480 -5.9562 -0.0023 13 8 3.3992 -5.8890 1.2385 14 6 4.3933 -6.7768 1.3979 15 8 4.6283 -7.5831 0.5291 16 6 5.2169 -6.7672 2.6598 17 1 5.7082 -5.8000 2.7656 18 6 4.3065 -7.0115 3.8650 19 6 5.1429 -7.0023 5.1461 20 6 6.1995 -8.1064 5.0732 21 6 7.1100 -7.8622 3.8680 22 1 7.6017 -6.8951 3.9741 23 6 8.1512 -8.9493 3.7965 24 8 8.2175 -9.6591 2.8209 25 8 9.0049 -9.1292 4.8166 26 6 6.2736 -7.8714 2.5869 27 1 -0.4849 0.8401 0.0004 28 1 0.6240 -2.5575 0.8880 29 1 0.6246 -2.5563 -0.8919 30 1 0.9445 -4.9826 0.8877 31 1 0.9452 -4.9823 -0.8922 32 1 2.1820 -6.9374 -0.0922 33 1 3.3216 -5.7953 -0.8440 34 1 3.5534 -6.2251 3.9166 35 1 3.8152 -7.9787 3.7591 36 1 4.4942 -7.1758 6.0047 37 1 5.6345 -6.0353 5.2522 38 1 5.7079 -9.0735 4.9670 39 1 6.7957 -8.0996 5.9856 40 1 9.6553 -9.8389 4.7249 41 1 5.7819 -8.8383 2.4808 42 1 6.9221 -7.6969 1.7283 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601068402.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:10 Heat of formation + Delta-G solvation = -253.880981 kcal Electronic energy + Delta-G solvation = -24222.765440 eV Core-core repulsion = 20359.969609 eV Total energy + Delta-G solvation = -3862.795831 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.150 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.09966 -40.34061 -38.22369 -36.97818 -36.44719 -35.99138 -32.79696 -32.11501 -31.31968 -29.99099 -26.96430 -24.90843 -24.60229 -22.47867 -22.10165 -21.71639 -20.81089 -20.00921 -18.36002 -17.76570 -17.09224 -16.57993 -16.42696 -16.21974 -15.75059 -15.44217 -15.12346 -14.66689 -14.42275 -14.28911 -14.05428 -13.80439 -13.32360 -13.05385 -12.86302 -12.77740 -12.43976 -11.98876 -11.93701 -11.75834 -11.57596 -11.44011 -11.13478 -11.11920 -10.92107 -10.88553 -10.84495 -10.73448 -10.51648 -10.37464 -10.20083 -10.03763 -9.12982 -8.89488 -8.22947 -6.13604 -4.15221 1.85591 2.27634 2.50308 2.89248 3.27795 3.34344 3.40882 4.17605 4.24535 4.31327 4.38146 4.57729 4.67306 4.72766 4.88988 4.94065 4.96279 5.04808 5.17248 5.23092 5.23230 5.27293 5.45993 5.55557 5.59239 5.66298 5.75982 5.84257 5.86736 5.91611 5.96335 6.01111 6.09447 6.15611 6.61780 7.03995 7.38199 7.53689 7.76754 7.86214 8.11000 8.50914 8.97775 9.49704 10.98000 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.020269 B = 0.002620 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.068420 B =10682.759140 C =11239.705186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.074 3.926 13 O -0.338 6.338 14 C 0.464 3.536 15 O -0.513 6.513 16 C -0.079 4.079 17 H 0.115 0.885 18 C -0.116 4.116 19 C -0.116 4.116 20 C -0.113 4.113 21 C -0.078 4.078 22 H 0.114 0.886 23 C 0.482 3.518 24 O -0.510 6.510 25 O -0.517 6.517 26 C -0.090 4.090 27 H 0.264 0.736 28 H 0.007 0.993 29 H 0.006 0.994 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.409 0.591 41 H 0.082 0.918 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.304 -17.968 12.123 24.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.000 4.000 13 O -0.254 6.254 14 C 0.307 3.693 15 O -0.402 6.402 16 C -0.098 4.098 17 H 0.133 0.867 18 C -0.154 4.154 19 C -0.153 4.153 20 C -0.151 4.151 21 C -0.097 4.097 22 H 0.132 0.868 23 C 0.324 3.676 24 O -0.397 6.397 25 O -0.329 6.329 26 C -0.127 4.127 27 H 0.073 0.927 28 H 0.025 0.975 29 H 0.024 0.976 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.268 0.732 41 H 0.101 0.899 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.107 -17.919 11.600 24.540 hybrid contribution 0.447 0.322 -0.359 0.658 sum 12.554 -17.597 11.240 24.364 Atomic orbital electron populations 1.69975 1.06102 1.27090 1.50630 1.24955 0.94996 0.99475 0.95129 0.86273 0.80029 0.82520 0.77633 1.19460 1.20840 1.20810 1.21085 0.94127 0.89277 1.50710 0.91464 1.20243 0.88757 0.83523 0.95505 1.87916 1.35308 1.12606 1.95222 1.22318 0.93254 0.85464 1.00536 1.23217 0.93700 0.98738 0.84348 1.86591 1.43417 1.53967 1.41434 1.23517 0.79183 0.77983 0.88591 1.90660 1.67738 1.38202 1.43591 1.21020 0.95480 1.02233 0.91058 0.86747 1.21603 0.97856 1.03558 0.92351 1.21534 0.97182 0.98984 0.97626 1.21596 0.96920 1.00189 0.96354 1.21061 0.93357 0.96946 0.98368 0.86764 1.23476 0.80483 0.84095 0.79510 1.90760 1.70313 1.45810 1.32833 1.84532 1.45520 1.56764 1.46039 1.21318 0.96265 0.99291 0.95869 0.92683 0.97488 0.97620 0.93199 0.91997 0.90480 0.90518 0.89480 0.91199 0.90492 0.90798 0.91156 0.90177 0.73195 0.89887 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.67 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -15.07 9.43 -34.44 -0.32 -15.39 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.19 5.27 5.69 36.01 0.20 5.47 16 10 O -0.39 -9.40 10.30 -38.80 -0.40 -9.80 16 11 C 0.06 1.12 6.33 37.16 0.24 1.36 16 12 C 0.07 1.17 5.84 37.16 0.22 1.39 16 13 O -0.34 -5.51 10.09 -42.04 -0.42 -5.93 16 14 C 0.46 6.72 7.26 36.00 0.26 6.98 16 15 O -0.51 -8.62 15.73 -18.75 -0.29 -8.91 16 16 C -0.08 -0.81 2.63 -91.77 -0.24 -1.06 16 17 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 18 C -0.12 -0.99 5.14 -26.73 -0.14 -1.12 16 19 C -0.12 -0.72 5.92 -26.73 -0.16 -0.88 16 20 C -0.11 -0.69 5.14 -26.73 -0.14 -0.83 16 21 C -0.08 -0.59 2.63 -91.77 -0.24 -0.83 16 22 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 23 C 0.48 4.25 7.63 36.00 0.27 4.53 16 24 O -0.51 -6.38 16.74 -18.75 -0.31 -6.69 16 25 O -0.52 -3.18 13.33 -39.26 -0.52 -3.71 16 26 C -0.09 -0.90 3.06 -26.73 -0.08 -0.98 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 33 H 0.08 1.26 8.13 -51.93 -0.42 0.84 16 34 H 0.09 0.81 8.11 -51.93 -0.42 0.39 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.41 8.11 -51.93 -0.42 -0.01 16 40 H 0.41 0.95 9.10 45.56 0.41 1.36 16 41 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 42 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 LS Contribution 357.74 15.07 5.39 5.39 Total: -1.00 -35.78 357.74 -6.96 -42.74 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -5.88 Total: -3.95 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -0.23 Total: 0.14 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.74 Total: -25.94 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -1.96 Total: -35.05 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.78 -6.96 -42.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068402.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -211.141 kcal (2) G-P(sol) polarization free energy of solvation -35.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -253.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds