Wall clock time and date at job start Fri Apr 10 2020 20:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00123 * 2 1 4 4 H 1.48503 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47095 * 300.00325 * 3 2 1 6 6 H 1.48497 * 109.47206 * 60.00253 * 3 2 1 7 7 C 1.37882 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00151 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99482 * 359.97438 * 7 2 1 10 10 O 1.42905 * 109.46816 * 179.97438 * 9 7 2 11 11 C 1.42901 * 113.99665 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46486 * 180.02562 * 11 10 9 13 13 O 1.45198 * 109.47297 * 65.00297 * 12 11 10 14 14 C 1.34228 * 116.99719 * 179.97438 * 13 12 11 15 15 O 1.20819 * 120.00343 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.99577 * 180.02562 * 14 13 12 17 17 H 1.09001 * 109.46957 * 299.99184 * 16 14 13 18 18 C 1.52997 * 109.47430 * 59.99581 * 16 14 13 19 19 C 1.53002 * 109.47092 * 60.00067 * 18 16 14 20 20 C 1.53001 * 109.46963 * 60.00194 * 19 18 16 21 21 C 1.53000 * 109.46886 * 299.99499 * 20 19 18 22 22 H 1.09002 * 109.47398 * 300.00496 * 21 20 19 23 23 C 1.50703 * 109.46912 * 180.02562 * 21 20 19 24 24 O 1.20824 * 119.99775 * 240.00306 * 23 21 20 25 25 O 1.34231 * 120.00026 * 60.00282 * 23 21 20 26 26 C 1.53002 * 109.47233 * 60.00670 * 21 20 19 27 27 H 0.97001 * 119.99624 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47031 * 60.00490 * 9 7 2 29 29 H 1.08993 * 109.47310 * 300.00018 * 9 7 2 30 30 H 1.08997 * 109.46664 * 60.00799 * 11 10 9 31 31 H 1.08998 * 109.47336 * 299.99965 * 11 10 9 32 32 H 1.09003 * 109.47431 * 305.00041 * 12 11 10 33 33 H 1.09003 * 109.46678 * 185.00025 * 12 11 10 34 34 H 1.09002 * 109.47045 * 179.97438 * 18 16 14 35 35 H 1.09000 * 109.47140 * 299.99841 * 18 16 14 36 36 H 1.09000 * 109.46497 * 180.02562 * 19 18 16 37 37 H 1.09002 * 109.47067 * 299.99853 * 19 18 16 38 38 H 1.09001 * 109.46652 * 179.97438 * 20 19 18 39 39 H 1.08992 * 109.47514 * 59.99933 * 20 19 18 40 40 H 0.96696 * 116.99892 * 180.02562 * 25 23 21 41 41 H 1.09002 * 109.47075 * 59.99068 * 26 21 20 42 42 H 1.08996 * 109.47407 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5854 -0.0017 11 6 1.5650 -4.8755 -0.0013 12 6 2.6480 -5.9562 -0.0020 13 8 3.4001 -5.8886 1.2382 14 6 4.3943 -6.7763 1.3970 15 8 4.6281 -7.5834 0.5289 16 6 5.2183 -6.7670 2.6589 17 1 5.7095 -5.7998 2.7649 18 6 4.3081 -7.0116 3.8641 19 6 3.6186 -8.3693 3.7153 20 6 4.6758 -9.4729 3.6423 21 6 5.5859 -9.2283 2.4370 22 1 4.9899 -9.2351 1.5243 23 6 6.6269 -10.3157 2.3647 24 8 7.8001 -10.0338 2.4261 25 8 6.2506 -11.5973 2.2321 26 6 6.2755 -7.8706 2.5857 27 1 -0.4849 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8904 29 1 0.6247 -2.5571 0.8896 30 1 0.9440 -4.9823 -0.8906 31 1 0.9458 -4.9826 0.8894 32 1 3.3210 -5.7957 -0.8443 33 1 2.1819 -6.9375 -0.0912 34 1 4.9042 -7.0053 4.7767 35 1 3.5550 -6.2254 3.9162 36 1 2.9699 -8.5433 4.5738 37 1 3.0226 -8.3761 2.8027 38 1 4.1846 -10.4402 3.5368 39 1 5.2718 -9.4662 4.5549 40 1 6.9541 -12.2593 2.1905 41 1 6.8714 -7.8639 3.4984 42 1 6.9235 -7.6962 1.7268 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601068403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:14 Heat of formation + Delta-G solvation = -249.303660 kcal Electronic energy + Delta-G solvation = -24692.052397 eV Core-core repulsion = 20829.455053 eV Total energy + Delta-G solvation = -3862.597344 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.150 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.31512 -40.27918 -38.12515 -36.88278 -36.34966 -35.98770 -32.80515 -32.06316 -31.24378 -30.02229 -26.97688 -24.83478 -24.52741 -22.51503 -22.24088 -21.78503 -21.07399 -19.77860 -18.26577 -17.52093 -17.18466 -16.54081 -16.41577 -16.08413 -15.93342 -15.38255 -15.19816 -14.67511 -14.41999 -14.22339 -13.89885 -13.73219 -13.14014 -12.99528 -12.88086 -12.75791 -12.44136 -12.21743 -11.97216 -11.80380 -11.51065 -11.45203 -11.30161 -11.10355 -10.89526 -10.87173 -10.71886 -10.58194 -10.45765 -10.38865 -10.11960 -10.00313 -9.13764 -8.90474 -8.23944 -6.14171 -4.15784 1.96676 2.22355 2.72441 2.78026 3.27665 3.34278 3.40852 4.24410 4.30504 4.34052 4.38390 4.66223 4.70100 4.73478 4.87532 4.98464 5.09382 5.12076 5.19212 5.22625 5.28327 5.37675 5.43373 5.55018 5.65392 5.71469 5.77063 5.83402 5.88516 5.90699 5.92482 5.97532 6.09904 6.23456 6.60871 7.02754 7.37199 7.63768 7.76129 7.81528 8.10177 8.49794 8.97167 9.49179 10.97420 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.028634 B = 0.002632 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.623868 B =10635.617374 C =10821.263044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.073 3.927 13 O -0.336 6.336 14 C 0.467 3.533 15 O -0.517 6.517 16 C -0.082 4.082 17 H 0.119 0.881 18 C -0.116 4.116 19 C -0.123 4.123 20 C -0.110 4.110 21 C -0.095 4.095 22 H 0.135 0.865 23 C 0.487 3.513 24 O -0.518 6.518 25 O -0.516 6.516 26 C -0.087 4.087 27 H 0.264 0.736 28 H 0.006 0.994 29 H 0.007 0.993 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.407 0.593 41 H 0.086 0.914 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.186 -21.467 8.258 24.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.000 4.000 13 O -0.252 6.252 14 C 0.311 3.689 15 O -0.407 6.407 16 C -0.101 4.101 17 H 0.137 0.863 18 C -0.153 4.153 19 C -0.161 4.161 20 C -0.148 4.148 21 C -0.113 4.113 22 H 0.152 0.848 23 C 0.330 3.670 24 O -0.406 6.406 25 O -0.328 6.328 26 C -0.125 4.125 27 H 0.073 0.927 28 H 0.024 0.976 29 H 0.025 0.975 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.266 0.734 41 H 0.105 0.895 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.270 -21.150 8.012 24.082 hybrid contribution 0.479 0.358 -0.327 0.682 sum 8.749 -20.792 7.685 23.831 Atomic orbital electron populations 1.69970 1.06108 1.27108 1.50606 1.24955 0.94993 0.99479 0.95109 0.86275 0.80045 0.82513 0.77642 1.19449 1.20837 1.20796 1.21086 0.94133 0.89272 1.50748 0.91457 1.20244 0.88743 0.83509 0.95499 1.87920 1.35315 1.12605 1.95221 1.22317 0.93252 0.85501 1.00532 1.23223 0.93702 0.98730 0.84387 1.86607 1.43272 1.53912 1.41394 1.23641 0.78999 0.77757 0.88542 1.90555 1.68127 1.38179 1.43792 1.21141 0.95523 1.02253 0.91157 0.86266 1.21615 0.99054 0.98269 0.96364 1.21609 0.97584 0.93977 1.02903 1.21557 0.96903 0.99925 0.96410 1.21417 0.95368 0.90738 1.03819 0.84807 1.23579 0.89552 0.82830 0.71081 1.90709 1.20373 1.83388 1.46171 1.84552 1.45149 1.18129 1.84974 1.21323 0.96242 0.90500 1.04398 0.92672 0.97630 0.97478 0.92003 0.93207 0.90498 0.90483 0.90016 0.89531 0.90438 0.91755 0.90449 0.91225 0.73434 0.89543 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -15.05 9.43 -34.44 -0.32 -15.37 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.19 5.25 5.69 36.01 0.20 5.45 16 10 O -0.39 -9.32 10.30 -38.80 -0.40 -9.72 16 11 C 0.06 1.10 6.33 37.16 0.24 1.33 16 12 C 0.07 1.11 5.84 37.16 0.22 1.33 16 13 O -0.34 -5.25 10.09 -42.02 -0.42 -5.68 16 14 C 0.47 6.31 5.74 36.01 0.21 6.51 16 15 O -0.52 -7.72 13.41 -18.74 -0.25 -7.97 16 16 C -0.08 -0.83 3.11 -91.77 -0.29 -1.11 16 17 H 0.12 1.11 8.14 -51.93 -0.42 0.68 16 18 C -0.12 -0.96 5.39 -26.73 -0.14 -1.11 16 19 C -0.12 -0.97 5.70 -26.73 -0.15 -1.13 16 20 C -0.11 -0.85 5.14 -26.73 -0.14 -0.98 16 21 C -0.09 -0.93 2.33 -91.77 -0.21 -1.14 16 22 H 0.13 1.53 5.52 -51.93 -0.29 1.25 16 23 C 0.49 5.04 7.63 36.01 0.27 5.31 16 24 O -0.52 -6.76 16.74 -18.75 -0.31 -7.07 16 25 O -0.52 -4.05 13.33 -39.26 -0.52 -4.57 16 26 C -0.09 -0.86 3.66 -26.73 -0.10 -0.96 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.08 1.21 8.13 -51.93 -0.42 0.79 16 33 H 0.08 0.96 8.13 -51.93 -0.42 0.54 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.79 8.11 -51.93 -0.42 0.37 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.60 7.22 -51.93 -0.37 0.22 16 38 H 0.08 0.55 8.11 -51.93 -0.42 0.13 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.41 1.47 9.10 45.56 0.41 1.88 16 41 H 0.09 0.75 8.10 -51.93 -0.42 0.33 16 42 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 LS Contribution 351.22 15.07 5.29 5.29 Total: -1.00 -34.75 351.22 -6.92 -41.67 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -5.70 Total: -2.37 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -0.31 Total: -0.36 kcal Atomic # 7 Polarization: -26.62 SS G_CDS: 0.74 Total: -25.88 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -1.91 Total: -35.01 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.75 -6.92 -41.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.630 kcal (2) G-P(sol) polarization free energy of solvation -34.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds