Wall clock time and date at job start Fri Apr 10 2020 20:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.42903 * 113.99594 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46972 * 179.97438 * 11 10 9 13 13 O 1.45210 * 109.47335 * 64.99954 * 12 11 10 14 14 C 1.34228 * 117.00077 * 180.02562 * 13 12 11 15 15 O 1.20820 * 119.99960 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99712 * 179.97438 * 14 13 12 17 17 H 1.09003 * 109.46683 * 60.00110 * 16 14 13 18 18 C 1.52997 * 109.47125 * 299.99510 * 16 14 13 19 19 C 1.52997 * 109.46859 * 179.97438 * 18 16 14 20 20 C 1.53002 * 109.47176 * 60.00513 * 19 18 16 21 21 C 1.53006 * 109.46982 * 299.99485 * 20 19 18 22 22 H 1.09002 * 109.47306 * 300.00652 * 21 20 19 23 23 C 1.50694 * 109.47357 * 179.97438 * 21 20 19 24 24 O 1.20819 * 120.00380 * 240.00449 * 23 21 20 25 25 O 1.34228 * 119.99843 * 60.00341 * 23 21 20 26 26 C 1.53002 * 109.46856 * 59.99939 * 21 20 19 27 27 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 29 29 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 30 30 H 1.09005 * 109.46851 * 299.99626 * 11 10 9 31 31 H 1.08995 * 109.47252 * 60.00069 * 11 10 9 32 32 H 1.09000 * 109.47310 * 184.99675 * 12 11 10 33 33 H 1.08994 * 109.47524 * 304.99888 * 12 11 10 34 34 H 1.08996 * 109.47220 * 300.00069 * 18 16 14 35 35 H 1.09006 * 109.46892 * 60.00165 * 18 16 14 36 36 H 1.08997 * 109.47053 * 180.02562 * 19 18 16 37 37 H 1.08996 * 109.47305 * 300.00071 * 19 18 16 38 38 H 1.08996 * 109.47364 * 59.99594 * 20 19 18 39 39 H 1.08997 * 109.47413 * 179.97438 * 20 19 18 40 40 H 0.96694 * 117.00169 * 180.02562 * 25 23 21 41 41 H 1.08997 * 109.47165 * 180.02562 * 26 21 20 42 42 H 1.09004 * 109.47317 * 60.00237 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5852 0.0017 11 6 1.5653 -4.8754 0.0013 12 6 2.6483 -5.9561 0.0020 13 8 3.3987 -5.8885 1.2433 14 6 4.3934 -6.7755 1.4031 15 8 4.6289 -7.5820 0.5348 16 6 5.2163 -6.7654 2.6656 17 1 4.5673 -6.9401 3.5237 18 6 5.9048 -5.4073 2.8147 19 6 6.7398 -5.3969 4.0967 20 6 7.7978 -6.4998 4.0253 21 6 7.1093 -7.8580 3.8762 22 1 6.4599 -8.0324 4.7341 23 6 8.1513 -8.9444 3.8052 24 8 8.2188 -9.6539 2.8296 25 8 9.0044 -9.1237 4.8258 26 6 6.2742 -7.8685 2.5941 27 1 -0.4850 -0.8401 -0.0004 28 1 0.6241 -2.5566 0.8903 29 1 0.6248 -2.5571 -0.8896 30 1 0.9442 -4.9823 0.8906 31 1 0.9462 -4.9826 -0.8894 32 1 2.1824 -6.9374 -0.0879 33 1 3.3224 -5.7955 -0.8393 34 1 6.5538 -5.2327 1.9565 35 1 5.1511 -4.6215 2.8660 36 1 7.2299 -4.4292 4.2032 37 1 6.0905 -5.5712 4.9546 38 1 8.4471 -6.3255 3.1674 39 1 8.3929 -6.4921 4.9384 40 1 9.6554 -9.8328 4.7344 41 1 5.7834 -8.8359 2.4881 42 1 6.9235 -7.6941 1.7361 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601068404.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:17 Heat of formation + Delta-G solvation = -281.560187 kcal Electronic energy + Delta-G solvation = -24343.772363 eV Core-core repulsion = 20479.776271 eV Total energy + Delta-G solvation = -3863.996092 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.02155 -41.32621 -39.21070 -38.65157 -37.46377 -37.10990 -35.25532 -32.95549 -32.02597 -31.46950 -28.57846 -25.67366 -25.54596 -24.76386 -23.54672 -22.40282 -21.80857 -20.77731 -19.24848 -19.06702 -18.84041 -18.13962 -17.92167 -17.27575 -16.90793 -16.63368 -16.48654 -15.86206 -15.68596 -15.39079 -15.11411 -14.76868 -14.50288 -14.45878 -14.08148 -13.71132 -13.57568 -13.54240 -13.44893 -13.00809 -12.64171 -12.54870 -12.46190 -12.35800 -12.23469 -11.92309 -11.88825 -11.85618 -11.76452 -11.52432 -11.24607 -11.18554 -10.89719 -10.85011 -10.39795 -8.83135 -6.54378 1.07006 1.17865 1.52115 1.54105 1.62685 1.83967 2.13863 2.49188 2.90355 3.03716 3.32996 3.57081 3.66369 3.78776 3.82886 3.97292 4.00305 4.07108 4.25584 4.30260 4.33091 4.34647 4.37963 4.49291 4.55355 4.58971 4.61945 4.88568 4.90365 4.97888 5.05601 5.10690 5.22878 5.25924 5.38305 5.41640 5.61403 5.65097 5.90941 6.32654 6.58538 6.64167 6.98209 7.25812 8.58295 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.020747 B = 0.002775 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.255133 B =10087.015647 C =11152.449002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.028 4.028 3 Si 1.127 2.873 4 H -0.276 1.276 5 H -0.265 1.265 6 H -0.269 1.269 7 C -0.625 4.625 8 H 0.052 0.948 9 C 0.195 3.805 10 O -0.402 6.402 11 C 0.052 3.948 12 C 0.077 3.923 13 O -0.354 6.354 14 C 0.461 3.539 15 O -0.540 6.540 16 C -0.069 4.069 17 H 0.142 0.858 18 C -0.117 4.117 19 C -0.107 4.107 20 C -0.108 4.108 21 C -0.073 4.073 22 H 0.144 0.856 23 C 0.489 3.511 24 O -0.556 6.556 25 O -0.506 6.506 26 C -0.084 4.084 27 H 0.257 0.743 28 H -0.012 1.012 29 H -0.013 1.013 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.101 0.899 40 H 0.427 0.573 41 H 0.070 0.930 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.289 -16.611 13.110 26.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.225 4.225 3 Si 0.946 3.054 4 H -0.201 1.201 5 H -0.190 1.190 6 H -0.194 1.194 7 C -0.662 4.662 8 H 0.071 0.929 9 C 0.120 3.880 10 O -0.321 6.321 11 C -0.024 4.024 12 C 0.003 3.997 13 O -0.270 6.270 14 C 0.306 3.694 15 O -0.430 6.430 16 C -0.088 4.088 17 H 0.160 0.840 18 C -0.155 4.155 19 C -0.145 4.145 20 C -0.146 4.146 21 C -0.092 4.092 22 H 0.162 0.838 23 C 0.333 3.667 24 O -0.446 6.446 25 O -0.320 6.320 26 C -0.122 4.122 27 H 0.066 0.934 28 H 0.005 0.995 29 H 0.005 0.995 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.127 0.873 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.079 0.921 39 H 0.119 0.881 40 H 0.289 0.711 41 H 0.088 0.912 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.069 -15.074 12.610 24.765 hybrid contribution -0.158 -2.664 -0.891 2.813 sum 14.911 -17.738 11.719 25.967 Atomic orbital electron populations 1.70931 1.07704 1.29901 1.47853 1.27585 0.96472 1.06520 0.91964 0.82834 0.74079 0.70214 0.78306 1.20121 1.18972 1.19420 1.22254 0.95392 0.92062 1.56513 0.92916 1.20010 0.89230 0.85540 0.93227 1.87891 1.34975 1.14024 1.95259 1.22683 0.94597 0.83207 1.01930 1.23154 0.93152 0.99099 0.84289 1.86591 1.44118 1.54988 1.41314 1.24419 0.78425 0.76794 0.89789 1.90645 1.68382 1.39195 1.44827 1.21151 0.95892 0.98614 0.93127 0.84033 1.21613 0.99733 0.93964 1.00209 1.21515 0.97062 0.99370 0.96522 1.21588 0.98169 0.90820 1.03984 1.21068 0.94258 0.92919 1.00909 0.83829 1.23647 0.80693 0.83282 0.79112 1.90753 1.71528 1.47733 1.34634 1.84485 1.45465 1.57434 1.44574 1.21206 0.96083 0.97797 0.97118 0.93419 0.99479 0.99523 0.92161 0.90099 0.87349 0.91443 0.92535 0.90867 0.89631 0.88930 0.92148 0.88053 0.71144 0.91173 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.69 13.65 21.45 0.29 -56.40 16 2 C -0.03 -1.61 5.46 84.65 0.46 -1.15 16 3 Si 1.13 49.75 29.90 68.60 2.05 51.81 16 4 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 6 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.62 -37.39 9.43 25.60 0.24 -37.15 16 8 H 0.05 3.16 7.81 -2.91 -0.02 3.14 16 9 C 0.20 10.74 5.00 71.24 0.36 11.10 16 10 O -0.40 -19.65 10.30 -145.57 -1.50 -21.15 16 11 C 0.05 1.88 6.33 71.98 0.46 2.34 16 12 C 0.08 2.41 5.85 71.98 0.42 2.83 16 13 O -0.35 -11.49 10.09 -48.75 -0.49 -11.98 16 14 C 0.46 13.35 7.26 71.24 0.52 13.87 16 15 O -0.54 -18.45 15.73 21.98 0.35 -18.10 16 16 C -0.07 -1.36 2.63 -11.54 -0.03 -1.39 16 17 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 18 C -0.12 -2.24 5.14 30.59 0.16 -2.08 16 19 C -0.11 -1.25 5.92 30.59 0.18 -1.07 16 20 C -0.11 -1.17 5.14 30.60 0.16 -1.01 16 21 C -0.07 -0.93 2.63 -11.54 -0.03 -0.97 16 22 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 23 C 0.49 7.86 7.63 71.23 0.54 8.41 16 24 O -0.56 -13.83 16.74 21.99 0.37 -13.46 16 25 O -0.51 -4.92 13.33 -51.40 -0.68 -5.60 16 26 C -0.08 -1.65 3.06 30.60 0.09 -1.56 16 27 H 0.26 15.75 7.22 -92.70 -0.67 15.08 16 28 H -0.01 -0.70 8.01 -2.39 -0.02 -0.72 16 29 H -0.01 -0.72 8.01 -2.39 -0.02 -0.74 16 30 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.11 2.76 8.13 -2.39 -0.02 2.74 16 33 H 0.07 2.24 8.13 -2.39 -0.02 2.22 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.07 1.66 8.11 -2.38 -0.02 1.64 16 36 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.10 0.75 8.11 -2.39 -0.02 0.73 16 40 H 0.43 1.00 9.10 -74.06 -0.67 0.32 16 41 H 0.07 1.54 8.06 -2.39 -0.02 1.52 16 42 H 0.06 1.43 8.06 -2.39 -0.02 1.41 16 Total: -1.00 -80.24 356.43 4.35 -75.88 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 0.44 Total: 6.85 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 3.52 Total: -7.83 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.29 Total: -56.40 kcal Atomic # 8 Polarization: -68.34 SS G_CDS: -1.96 Total: -70.30 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 2.05 Total: 51.81 kcal Total: -80.24 4.35 -75.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068404.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.676 kcal (2) G-P(sol) polarization free energy of solvation -80.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -285.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -281.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds