Wall clock time and date at job start Fri Apr 10 2020 20:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99961 * 2 1 4 4 H 1.48505 * 109.46902 * 269.99756 * 3 2 1 5 5 H 1.48496 * 109.46980 * 29.99783 * 3 2 1 6 6 H 1.48492 * 109.46938 * 149.99940 * 3 2 1 7 7 C 1.37880 * 119.99595 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99018 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00499 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47225 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46951 * 179.97438 * 10 9 7 12 12 O 1.45193 * 109.46681 * 179.97438 * 11 10 9 13 13 C 1.34238 * 116.99860 * 180.02562 * 12 11 10 14 14 O 1.20824 * 119.99758 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99820 * 180.02562 * 13 12 11 16 16 C 1.52999 * 109.46564 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.46765 * 180.02562 * 16 15 13 18 18 H 1.08998 * 110.27269 * 304.36118 * 17 16 15 19 19 C 1.54947 * 110.39442 * 182.21799 * 17 16 15 20 20 C 1.55305 * 100.94425 * 204.59649 * 19 17 16 21 21 H 1.08998 * 110.84418 * 275.94481 * 20 19 17 22 22 C 1.50700 * 110.84853 * 152.31831 * 20 19 17 23 23 O 1.20825 * 119.99813 * 5.71722 * 22 20 19 24 24 O 1.34229 * 119.99879 * 185.71236 * 22 20 19 25 25 C 1.54387 * 102.24962 * 34.12994 * 20 19 17 26 26 O 1.43236 * 107.59079 * 338.64624 * 25 20 19 27 27 H 0.96993 * 120.00063 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47124 * 59.99539 * 9 7 2 29 29 H 1.09009 * 109.46711 * 299.99578 * 9 7 2 30 30 H 1.08998 * 109.46989 * 59.99628 * 10 9 7 31 31 H 1.08997 * 109.46967 * 299.99846 * 10 9 7 32 32 H 1.09003 * 109.46908 * 59.99854 * 11 10 9 33 33 H 1.08999 * 109.47063 * 299.99692 * 11 10 9 34 34 H 1.08998 * 109.46758 * 60.00438 * 15 13 12 35 35 H 1.09000 * 109.47059 * 300.00330 * 15 13 12 36 36 H 1.08998 * 109.47269 * 60.00697 * 16 15 13 37 37 H 1.09003 * 109.47203 * 299.99675 * 16 15 13 38 38 H 1.09002 * 111.12827 * 86.67315 * 19 17 16 39 39 H 1.09008 * 111.12113 * 322.51283 * 19 17 16 40 40 H 0.96697 * 116.99575 * 180.02562 * 24 22 20 41 41 H 1.09001 * 109.82619 * 98.16119 * 25 20 19 42 42 H 1.09004 * 109.82781 * 219.03947 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9872 0.0012 12 8 2.4238 -6.0907 0.0006 13 6 1.9108 -7.3312 0.0005 14 8 0.7129 -7.4895 0.0004 15 6 2.8288 -8.5263 0.0004 16 6 1.9955 -9.8094 -0.0003 17 6 2.9275 -11.0228 0.0003 18 1 3.6159 -10.9706 -0.8432 19 6 2.1056 -12.3350 -0.0566 20 6 3.1037 -13.3362 0.5862 21 1 3.8093 -13.7106 -0.1554 22 6 2.3702 -14.4717 1.2523 23 8 1.1702 -14.5616 1.1444 24 8 3.0502 -15.3833 1.9654 25 6 3.8215 -12.4569 1.6327 26 8 3.6571 -11.0904 1.2358 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8904 30 1 2.8720 -3.6043 0.8905 31 1 2.8719 -3.6044 -0.8894 32 1 0.8533 -5.0451 -0.8886 33 1 0.8540 -5.0447 0.8914 34 1 3.4575 -8.5014 0.8905 35 1 3.4577 -8.5013 -0.8895 36 1 1.3671 -9.8340 -0.8906 37 1 1.3663 -9.8346 0.8895 38 1 1.8791 -12.6124 -1.0861 39 1 1.1943 -12.2537 0.5359 40 1 2.5363 -16.0934 2.3738 41 1 3.3757 -12.6129 2.6150 42 1 4.8815 -12.7095 1.6634 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:21 Heat of formation + Delta-G solvation = -251.869899 kcal Electronic energy + Delta-G solvation = -23235.682720 eV Core-core repulsion = 19372.974096 eV Total energy + Delta-G solvation = -3862.708624 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.150 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.25699 -40.23971 -39.50295 -36.73815 -36.54926 -34.03893 -33.92728 -33.01909 -31.68823 -29.59897 -27.11244 -25.05583 -24.82315 -23.11094 -21.61580 -21.22415 -20.44164 -20.11229 -18.60994 -17.90439 -17.58133 -17.03396 -16.54366 -16.41015 -15.92669 -15.89725 -15.62162 -14.91221 -14.54041 -14.46244 -13.92893 -13.81837 -13.35650 -13.22240 -12.73056 -12.34597 -12.26421 -12.13006 -12.08796 -11.95374 -11.81733 -11.63470 -11.47782 -11.26652 -11.10127 -10.95699 -10.64902 -10.60614 -10.34754 -10.29584 -10.01314 -9.69562 -9.47854 -9.14778 -8.37506 -6.02285 -4.05283 1.55521 2.31759 2.40597 2.93840 3.24046 3.31938 3.38035 3.41764 3.58592 4.18475 4.26066 4.34462 4.44411 4.58407 4.62684 4.75630 4.89300 5.00679 5.10677 5.12011 5.26497 5.27753 5.33592 5.42703 5.52178 5.61001 5.66888 5.74977 5.88145 5.92978 6.04811 6.46468 6.55576 6.56672 6.89069 7.01478 7.26163 7.61836 7.73028 7.95896 7.99242 8.37499 9.01016 9.58898 11.09157 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.053429 B = 0.001766 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.934463 B =15850.350519 C =16113.425181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.023 3.977 10 C -0.109 4.109 11 C 0.068 3.932 12 O -0.359 6.359 13 C 0.456 3.544 14 O -0.516 6.516 15 C -0.112 4.112 16 C -0.108 4.108 17 C 0.081 3.919 18 H 0.082 0.918 19 C -0.136 4.136 20 C -0.121 4.121 21 H 0.126 0.874 22 C 0.490 3.510 23 O -0.506 6.506 24 O -0.514 6.514 25 C 0.068 3.932 26 O -0.370 6.370 27 H 0.261 0.739 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.414 0.586 41 H 0.074 0.926 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.950 -31.984 0.856 33.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.076 0.924 9 C -0.014 4.014 10 C -0.147 4.147 11 C -0.005 4.005 12 O -0.276 6.276 13 C 0.299 3.701 14 O -0.405 6.405 15 C -0.149 4.149 16 C -0.145 4.145 17 C 0.024 3.976 18 H 0.100 0.900 19 C -0.174 4.174 20 C -0.141 4.141 21 H 0.144 0.856 22 C 0.332 3.668 23 O -0.393 6.393 24 O -0.327 6.327 25 C -0.009 4.009 26 O -0.289 6.289 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.273 0.727 41 H 0.092 0.908 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.394 -31.391 0.766 32.503 hybrid contribution -0.183 0.217 0.145 0.318 sum 8.212 -31.174 0.910 32.250 Atomic orbital electron populations 1.69969 1.06081 1.26740 1.50569 1.25038 0.94887 0.99370 0.95216 0.86537 0.79799 0.83218 0.78115 1.20626 1.21202 1.19819 1.21182 0.93136 0.90698 1.50957 0.92415 1.19059 0.93865 0.90786 0.97678 1.21761 0.99907 0.91058 1.01947 1.23485 0.91227 0.83722 1.02080 1.86501 1.42680 1.15312 1.83079 1.23663 0.88685 0.85220 0.72545 1.90656 1.17174 1.86955 1.45708 1.21320 0.97987 0.89396 1.06240 1.21580 0.97067 0.90889 1.04971 1.23085 0.92562 0.94439 0.87467 0.89972 1.23338 0.98712 0.92189 1.03137 1.22638 0.99334 0.92763 0.99334 0.85594 1.22976 0.86154 0.82037 0.75682 1.90769 1.16014 1.74246 1.58246 1.84525 1.45973 1.38910 1.63260 1.22993 1.00511 0.80856 0.96521 1.88498 1.76208 1.23940 1.40276 0.92910 0.96248 0.96223 0.92149 0.92165 0.91588 0.91572 0.87084 0.87802 0.89288 0.89908 0.88560 0.88413 0.72703 0.90770 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.31 5.53 -26.73 -0.15 -2.45 16 11 C 0.07 1.28 5.47 37.16 0.20 1.49 16 12 O -0.36 -6.08 10.22 -39.28 -0.40 -6.48 16 13 C 0.46 6.81 7.96 36.01 0.29 7.09 16 14 O -0.52 -9.15 15.73 -18.75 -0.29 -9.44 16 15 C -0.11 -1.11 5.73 -27.88 -0.16 -1.27 16 16 C -0.11 -0.95 4.25 -26.73 -0.11 -1.07 16 17 C 0.08 0.55 3.42 -25.70 -0.09 0.46 16 18 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 19 C -0.14 -0.83 5.65 -24.48 -0.14 -0.97 16 20 C -0.12 -0.62 3.50 -89.82 -0.31 -0.93 16 21 H 0.13 0.36 8.14 -51.93 -0.42 -0.07 16 22 C 0.49 3.18 7.50 36.01 0.27 3.45 16 23 O -0.51 -5.04 16.52 -18.75 -0.31 -5.35 16 24 O -0.51 -2.14 13.41 -39.26 -0.53 -2.66 16 25 C 0.07 0.40 7.38 37.88 0.28 0.67 16 26 O -0.37 -3.03 10.69 -35.23 -0.38 -3.41 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 33 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 34 H 0.11 1.05 7.91 -51.93 -0.41 0.64 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 37 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 38 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.10 0.78 7.39 -51.92 -0.38 0.39 16 40 H 0.41 0.16 9.10 45.56 0.41 0.58 16 41 H 0.07 0.45 7.81 -51.93 -0.41 0.04 16 42 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 360.65 15.07 5.43 5.43 Total: -1.00 -35.44 360.65 -7.05 -42.49 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -5.82 Total: -4.29 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -0.47 Total: -6.68 kcal Atomic # 7 Polarization: -27.00 SS G_CDS: 0.74 Total: -26.27 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -1.91 Total: -27.35 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.44 -7.05 -42.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -209.380 kcal (2) G-P(sol) polarization free energy of solvation -35.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -251.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds