Wall clock time and date at job start Fri Apr 10 2020 20:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99954 * 2 1 4 4 H 1.48504 * 109.47023 * 269.99876 * 3 2 1 5 5 H 1.48496 * 109.47234 * 29.99447 * 3 2 1 6 6 H 1.48498 * 109.47329 * 149.99715 * 3 2 1 7 7 C 1.37870 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00591 * 0.02562 * 7 2 1 9 9 C 1.50709 * 119.99761 * 180.02562 * 7 2 1 10 10 C 1.53040 * 109.45934 * 180.02562 * 9 7 2 11 11 C 1.53191 * 109.31081 * 181.36799 * 10 9 7 12 12 N 1.46919 * 108.77879 * 305.36761 * 11 10 9 13 13 C 1.34777 * 120.63039 * 233.58573 * 12 11 10 14 14 O 1.21631 * 119.99934 * 4.41344 * 13 12 11 15 15 C 1.47211 * 120.00144 * 184.41625 * 13 12 11 16 16 C 1.37749 * 119.93910 * 224.09950 * 15 13 12 17 17 C 1.39867 * 119.92796 * 179.78879 * 16 15 13 18 18 C 1.36305 * 119.81873 * 0.48940 * 17 16 15 19 19 C 1.40771 * 119.70888 * 359.49576 * 18 17 16 20 20 N 1.32812 * 132.74152 * 180.25855 * 19 18 17 21 21 C 1.32378 * 109.74286 * 180.02562 * 20 19 18 22 22 N 1.31391 * 109.61735 * 359.97438 * 21 20 19 23 23 N 1.36558 * 119.87916 * 0.27144 * 19 18 17 24 24 C 1.46930 * 118.74101 * 53.86066 * 12 11 10 25 25 C 1.53038 * 109.44820 * 300.06393 * 9 7 2 26 26 H 0.97006 * 119.99910 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.46024 * 60.03042 * 9 7 2 28 28 H 1.09007 * 109.49918 * 61.42043 * 10 9 7 29 29 H 1.08990 * 109.52833 * 301.34091 * 10 9 7 30 30 H 1.08998 * 109.58622 * 185.57752 * 11 10 9 31 31 H 1.09001 * 109.70224 * 65.22887 * 11 10 9 32 32 H 1.07998 * 120.03743 * 0.02562 * 16 15 13 33 33 H 1.08001 * 120.09017 * 180.27645 * 17 16 15 34 34 H 1.07993 * 120.14272 * 179.76543 * 18 17 16 35 35 H 1.08007 * 125.19199 * 179.97438 * 21 20 19 36 36 H 1.08996 * 109.58582 * 65.92433 * 24 12 11 37 37 H 1.08990 * 109.58828 * 186.35178 * 24 12 11 38 38 H 1.08997 * 109.49916 * 298.57593 * 25 9 7 39 39 H 1.09001 * 109.49872 * 58.66977 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0214 -2.6370 0.0010 11 6 5.5529 -2.6332 0.0361 12 7 6.0495 -1.8176 -1.0805 13 6 6.9439 -2.3211 -1.9540 14 8 7.2869 -3.4851 -1.8702 15 6 7.5057 -1.4624 -3.0095 16 6 7.6164 -1.9390 -4.2972 17 6 8.1461 -1.1214 -5.3008 18 6 8.5602 0.1414 -4.9980 19 6 8.4415 0.6170 -3.6783 20 7 8.7496 1.7754 -3.1065 21 6 8.4437 1.7341 -1.8193 22 7 7.9336 0.5596 -1.5246 23 7 7.9181 -0.1900 -2.7089 24 6 5.5573 -0.4406 -1.2232 25 6 4.0216 -0.4714 -1.2478 26 1 -0.4850 0.8401 0.0004 27 1 3.8743 -0.6805 0.8914 28 1 3.6795 -3.1436 -0.9016 29 1 3.6387 -3.1587 0.8781 30 1 5.9232 -3.6534 -0.0636 31 1 5.8978 -2.2099 0.9795 32 1 7.2910 -2.9416 -4.5324 33 1 8.2300 -1.4909 -6.3121 34 1 8.9736 0.7758 -5.7680 35 1 8.5909 2.5424 -1.1182 36 1 5.9004 0.1593 -0.3803 37 1 5.9306 -0.0138 -2.1541 38 1 3.6796 -0.9986 -2.1383 39 1 3.6389 0.5492 -1.2593 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611468678.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:25 Heat of formation + Delta-G solvation = 108.882623 kcal Electronic energy + Delta-G solvation = -24859.418809 eV Core-core repulsion = 21384.248010 eV Total energy + Delta-G solvation = -3475.170799 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.99414 -40.09384 -38.01325 -37.06329 -34.24980 -33.40069 -31.55814 -31.24355 -30.65071 -30.15787 -26.81209 -25.05667 -23.72990 -23.38590 -22.75184 -22.23718 -20.22249 -18.87308 -18.27412 -17.77184 -16.94313 -16.71883 -16.51195 -15.94006 -15.79752 -15.00631 -14.67817 -14.34443 -13.93608 -13.56353 -13.25242 -13.18123 -12.95694 -12.76469 -12.59775 -12.40112 -12.17636 -12.08562 -11.91413 -11.33990 -11.05050 -10.81919 -10.40086 -10.27742 -10.23434 -9.92151 -9.82678 -9.78830 -9.39954 -9.15481 -8.62222 -8.54528 -8.33565 -6.14425 -4.13926 0.04539 0.66906 1.65415 2.28780 2.72701 2.88771 3.13779 3.18310 3.30137 3.32583 3.68524 3.89986 4.25161 4.32883 4.47273 4.59796 4.82236 5.04330 5.10976 5.25610 5.38602 5.51323 5.60691 5.63610 5.72613 5.82276 5.84974 5.89211 5.97591 6.08383 6.15622 6.23244 6.35443 6.49824 6.57199 6.66310 6.76850 7.09502 7.39595 7.43699 7.67580 7.70329 7.98122 8.44521 8.89761 9.47646 10.98820 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.016931 B = 0.005476 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.392495 B = 5112.411908 C = 5923.389617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.883 3.117 4 H -0.280 1.280 5 H -0.295 1.295 6 H -0.264 1.264 7 C -0.513 4.513 8 H 0.075 0.925 9 C 0.015 3.985 10 C -0.112 4.112 11 C 0.108 3.892 12 N -0.573 5.573 13 C 0.560 3.440 14 O -0.532 6.532 15 C 0.108 3.892 16 C -0.097 4.097 17 C -0.065 4.065 18 C -0.089 4.089 19 C 0.276 3.724 20 N -0.543 5.543 21 C 0.234 3.766 22 N -0.326 5.326 23 N -0.275 5.275 24 C 0.113 3.887 25 C -0.137 4.137 26 H 0.264 0.736 27 H 0.030 0.970 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.169 0.831 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.227 0.773 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.604 0.087 -9.439 19.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.713 3.287 4 H -0.207 1.207 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.551 4.551 8 H 0.093 0.907 9 C -0.004 4.004 10 C -0.150 4.150 11 C -0.013 4.013 12 N -0.303 5.303 13 C 0.345 3.655 14 O -0.410 6.410 15 C -0.004 4.004 16 C -0.120 4.120 17 C -0.091 4.091 18 C -0.110 4.110 19 C 0.022 3.978 20 N -0.273 5.273 21 C -0.066 4.066 22 N -0.156 5.156 23 N -0.052 5.052 24 C -0.010 4.010 25 C -0.175 4.175 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.187 0.813 33 H 0.177 0.823 34 H 0.179 0.821 35 H 0.243 0.757 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 17.518 -0.193 -8.646 19.537 hybrid contribution 0.277 1.182 -0.187 1.229 sum 17.795 0.989 -8.833 19.892 Atomic orbital electron populations 1.69894 1.06255 1.26966 1.50597 1.25024 0.94686 0.98971 0.94479 0.86910 0.80112 0.83817 0.77817 1.20724 1.22285 1.18911 1.21022 0.88591 0.94531 1.50975 0.90711 1.19139 0.96935 0.91607 0.92729 1.21834 0.91298 0.99662 1.02246 1.21915 0.96389 0.95583 0.87402 1.48054 1.40290 1.15008 1.26986 1.17496 0.80347 0.86474 0.81222 1.90836 1.61641 1.15875 1.72608 1.20540 1.01216 0.82180 0.96456 1.21404 0.99765 1.01956 0.88900 1.21232 0.94854 0.92545 1.00479 1.20480 1.01831 0.96769 0.91962 1.21885 0.95954 0.87562 0.92375 1.70828 1.29288 1.19544 1.07599 1.26271 0.92726 0.95179 0.92414 1.78891 1.29754 1.06355 1.00644 1.47989 1.38480 1.10063 1.08683 1.22227 0.96046 0.81030 1.01691 1.22532 0.91399 1.01204 1.02329 0.92605 0.95236 0.92111 0.90902 0.89469 0.91308 0.81325 0.82325 0.82140 0.75657 0.90351 0.92041 0.91792 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 2 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 3 Si 0.88 21.45 24.38 -169.99 -4.14 17.31 16 4 H -0.28 -6.66 6.86 56.52 0.39 -6.27 16 5 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.26 -6.10 6.53 56.52 0.37 -5.73 16 7 C -0.51 -13.97 9.14 -34.44 -0.31 -14.28 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C 0.01 0.33 1.66 -91.73 -0.15 0.18 16 10 C -0.11 -2.15 5.30 -26.61 -0.14 -2.29 16 11 C 0.11 1.84 6.44 -3.71 -0.02 1.81 16 12 N -0.57 -10.00 2.97 -173.86 -0.52 -10.51 16 13 C 0.56 9.37 7.30 -12.62 -0.09 9.28 16 14 O -0.53 -9.75 16.37 5.25 0.09 -9.67 16 15 C 0.11 1.52 5.65 -82.05 -0.46 1.05 16 16 C -0.10 -0.98 9.63 -39.15 -0.38 -1.36 16 17 C -0.07 -0.47 10.04 -39.67 -0.40 -0.87 16 18 C -0.09 -0.79 10.09 -39.32 -0.40 -1.18 16 19 C 0.28 3.57 7.88 -156.37 -1.23 2.34 16 20 N -0.54 -7.42 11.24 -13.99 -0.16 -7.57 16 21 C 0.23 3.02 12.98 -92.00 -1.19 1.82 16 22 N -0.33 -4.95 9.32 29.25 0.27 -4.68 16 23 N -0.27 -4.00 2.74 -8.81 -0.02 -4.03 16 24 C 0.11 2.04 4.50 -3.48 -0.02 2.02 16 25 C -0.14 -2.87 4.86 -26.39 -0.13 -3.00 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.09 1.42 6.99 -51.93 -0.36 1.06 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.17 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.16 0.49 8.06 -52.49 -0.42 0.07 16 34 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.23 1.95 8.06 -52.48 -0.42 1.53 16 36 H 0.08 1.44 7.51 -51.93 -0.39 1.05 16 37 H 0.06 1.08 4.85 -51.93 -0.25 0.82 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.06 1.30 3.24 -51.93 -0.17 1.14 16 LS Contribution 313.28 15.07 4.72 4.72 Total: -1.00 -33.89 313.28 -8.55 -42.44 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -4.53 Total: 0.89 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -5.03 Total: -2.58 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 0.35 Total: -53.11 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.14 Total: 17.31 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.89 -8.55 -42.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611468678.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.321 kcal (2) G-P(sol) polarization free energy of solvation -33.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds