Wall clock time and date at job start Fri Apr 10 2020 20:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.50705 * 115.55747 * 252.10985 * 3 2 1 5 5 O 1.21299 * 120.00128 * 245.68840 * 4 3 2 6 6 N 1.34775 * 119.99683 * 65.68100 * 4 3 2 7 7 C 1.40596 * 120.00128 * 180.02562 * 6 4 3 8 8 C 1.40651 * 126.07710 * 359.97438 * 7 6 4 9 9 N 1.30906 * 108.38175 * 179.77906 * 8 7 6 10 10 N 1.40066 * 108.41181 * 0.37252 * 9 8 7 11 11 C 1.37320 * 126.07612 * 179.87783 * 10 9 8 12 12 H 1.08002 * 120.00549 * 187.18061 * 11 10 9 13 13 C 1.38994 * 119.99606 * 7.18568 * 11 10 9 14 14 N 1.31298 * 120.00044 * 179.38900 * 13 11 10 15 15 Si 1.86801 * 119.99800 * 359.38367 * 13 11 10 16 16 H 1.48504 * 109.46989 * 180.02562 * 15 13 11 17 17 H 1.48496 * 109.47539 * 300.00162 * 15 13 11 18 18 H 1.48497 * 109.46864 * 60.00668 * 15 13 11 19 19 C 1.35680 * 126.08241 * 180.02562 * 7 6 4 20 20 C 1.53093 * 117.50910 * 106.39554 * 3 2 1 21 21 C 1.52546 * 117.51182 * 37.83265 * 3 2 1 22 22 C 1.53874 * 120.82688 * 357.28930 * 21 3 2 23 23 C 1.54983 * 104.06717 * 192.35964 * 22 21 3 24 24 C 1.54923 * 102.81837 * 37.56344 * 23 22 21 25 25 C 1.53481 * 121.09068 * 217.92006 * 21 3 2 26 26 H 0.97001 * 120.00164 * 0.02562 * 6 4 3 27 27 H 1.07994 * 125.80834 * 359.97438 * 8 7 6 28 28 H 0.96999 * 119.99957 * 354.70689 * 14 13 11 29 29 H 1.07997 * 126.24951 * 0.02562 * 19 7 6 30 30 H 1.08998 * 117.51007 * 359.95565 * 20 3 2 31 31 H 1.09001 * 117.51109 * 145.04508 * 20 3 2 32 32 H 1.09005 * 110.50819 * 311.00650 * 22 21 3 33 33 H 1.09003 * 110.51313 * 73.71325 * 22 21 3 34 34 H 1.09000 * 110.74617 * 279.23599 * 23 22 21 35 35 H 1.09000 * 110.90141 * 155.97231 * 23 22 21 36 36 H 1.08998 * 110.48276 * 203.59042 * 24 23 22 37 37 H 1.09004 * 110.47934 * 80.96765 * 24 23 22 38 38 H 1.09005 * 110.06709 * 263.30929 * 25 21 3 39 39 H 1.08997 * 110.07012 * 24.78318 * 25 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.2580 0.4186 1.2938 5 8 3.9094 1.4407 1.3429 6 7 3.1154 -0.3432 2.3964 7 6 3.7213 0.0469 3.6037 8 6 4.5004 1.2005 3.8045 9 7 4.8862 1.2257 5.0551 10 7 4.3780 0.0895 5.6977 11 6 4.5653 -0.2454 7.0162 12 1 4.2268 -1.2030 7.3835 13 6 5.1907 0.6479 7.8781 14 7 5.3591 0.3326 9.1414 15 14 5.7916 2.2971 7.2388 16 1 6.4187 3.0593 8.3484 17 1 6.7915 2.0767 6.1633 18 1 4.6428 3.0661 6.6967 19 6 3.6593 -0.6231 4.7819 20 6 3.3150 0.3842 -1.3026 21 6 3.3132 -1.0676 -0.8298 22 6 2.5073 -2.1402 -1.5834 23 6 3.5731 -3.1811 -2.0108 24 6 4.5325 -3.2098 -0.7948 25 6 4.5992 -1.7394 -0.3293 26 1 2.5947 -1.1607 2.3571 27 1 4.7372 1.9413 3.0552 28 1 4.9800 -0.4890 9.4909 29 1 3.1369 -1.5510 4.9622 30 1 2.6900 0.6353 -2.1596 31 1 4.2501 0.9388 -1.2236 32 1 1.7698 -2.5975 -0.9237 33 1 2.0223 -1.7086 -2.4590 34 1 4.0968 -2.8512 -2.9080 35 1 3.1197 -4.1597 -2.1681 36 1 5.5199 -3.5597 -1.0962 37 1 4.1277 -3.8420 -0.0045 38 1 5.4707 -1.2488 -0.7630 39 1 4.6467 -1.6923 0.7586 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625845192.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:32 Heat of formation + Delta-G solvation = 85.410432 kcal Electronic energy + Delta-G solvation = -23757.715077 eV Core-core repulsion = 20281.526447 eV Total energy + Delta-G solvation = -3476.188630 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.96959 -39.98343 -38.25259 -36.54044 -34.67610 -34.32655 -33.48075 -30.74231 -29.14491 -28.62423 -26.56963 -25.20157 -24.11835 -22.03664 -21.17126 -20.43116 -20.00630 -19.71408 -18.47397 -17.73972 -16.61585 -16.30431 -15.80562 -15.26463 -14.67001 -14.43333 -14.37239 -13.88757 -13.72953 -13.68056 -13.51889 -13.36161 -13.12357 -12.88514 -12.62557 -12.54058 -12.43911 -11.86658 -11.49902 -11.38881 -11.31443 -10.97735 -10.88315 -10.85030 -10.62755 -10.34139 -10.18660 -9.95919 -9.55369 -9.52177 -8.59319 -8.35400 -7.37018 -7.14212 -4.53695 2.06816 2.30133 2.57294 2.99951 3.13398 3.35352 3.53527 3.56725 3.70452 3.87624 3.92118 4.07400 4.21135 4.29885 4.34408 4.40464 4.45372 4.81243 4.83743 4.89158 5.12730 5.19307 5.30852 5.33311 5.42193 5.53169 5.59785 5.64681 5.78849 5.81492 5.89880 5.96598 6.01828 6.04221 6.51139 6.64424 6.73065 7.25391 7.30470 7.60213 7.81724 7.97630 8.21411 8.45434 8.85951 9.12166 10.08226 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.023249 B = 0.003718 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.038171 B = 7528.801606 C = 7823.567082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C 0.247 3.753 3 C -0.071 4.071 4 C 0.548 3.452 5 O -0.516 6.516 6 N -0.613 5.613 7 C -0.056 4.056 8 C 0.010 3.990 9 N -0.358 5.358 10 N -0.146 5.146 11 C -0.377 4.377 12 H 0.115 0.885 13 C 0.039 3.961 14 N -0.830 5.830 15 Si 1.123 2.877 16 H -0.314 1.314 17 H -0.274 1.274 18 H -0.282 1.282 19 C -0.058 4.058 20 C -0.102 4.102 21 C -0.079 4.079 22 C -0.095 4.095 23 C -0.120 4.120 24 C -0.122 4.122 25 C -0.097 4.097 26 H 0.402 0.598 27 H 0.186 0.814 28 H 0.280 0.720 29 H 0.153 0.847 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.441 -7.469 -20.935 22.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.071 4.071 3 C -0.078 4.078 4 C 0.331 3.669 5 O -0.391 6.391 6 N -0.255 5.255 7 C -0.161 4.161 8 C -0.162 4.162 9 N -0.193 5.193 10 N 0.088 4.912 11 C -0.509 4.509 12 H 0.132 0.868 13 C -0.176 4.176 14 N -0.457 5.457 15 Si 0.954 3.046 16 H -0.245 1.245 17 H -0.200 1.200 18 H -0.209 1.209 19 C -0.211 4.211 20 C -0.140 4.140 21 C -0.081 4.081 22 C -0.132 4.132 23 C -0.158 4.158 24 C -0.160 4.160 25 C -0.135 4.135 26 H 0.235 0.765 27 H 0.202 0.798 28 H 0.091 0.909 29 H 0.171 0.829 30 H 0.131 0.869 31 H 0.144 0.856 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.246 -4.802 -19.466 20.175 hybrid contribution -1.525 -2.541 -0.791 3.068 sum -3.772 -7.343 -20.257 21.874 Atomic orbital electron populations 1.81265 1.11590 1.08664 1.07307 1.27184 0.92635 0.93346 0.93931 1.18470 0.83102 1.10996 0.95250 1.18544 0.81855 0.84009 0.82523 1.90629 1.40751 1.24197 1.83543 1.42421 1.50362 1.25200 1.07479 1.17105 1.12059 1.01114 0.85781 1.23698 1.00396 0.98367 0.93776 1.76177 1.27444 1.08034 1.07661 1.44777 1.26571 1.12452 1.07354 1.21195 1.43371 1.05804 0.80576 0.86792 1.27018 0.92593 1.05018 0.92995 1.70911 1.35744 1.25870 1.13173 0.82518 0.78174 0.71773 0.72171 1.24485 1.20045 1.20941 1.21305 1.08197 1.02079 0.89526 1.23349 1.02198 0.96213 0.92277 1.22161 0.97398 0.90643 0.97897 1.22013 0.97299 0.94650 0.99227 1.22464 0.96420 0.98596 0.98273 1.22357 0.99922 0.95920 0.97765 1.21801 0.94524 0.95190 1.01952 0.76462 0.79784 0.90900 0.82943 0.86918 0.85572 0.90719 0.90930 0.91027 0.91200 0.91092 0.91222 0.90171 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.96 18.54 42.15 0.78 -5.18 16 2 C 0.25 3.11 14.33 -20.76 -0.30 2.81 16 3 C -0.07 -0.80 2.36 -158.63 -0.37 -1.17 16 4 C 0.55 8.28 5.86 -10.98 -0.06 8.22 16 5 O -0.52 -9.42 13.86 5.54 0.08 -9.34 16 6 N -0.61 -9.59 5.13 -10.00 -0.05 -9.64 16 7 C -0.06 -1.14 6.90 -83.84 -0.58 -1.71 16 8 C 0.01 0.22 10.85 -17.04 -0.18 0.04 16 9 N -0.36 -9.26 7.17 30.80 0.22 -9.04 16 10 N -0.15 -3.72 3.68 -11.41 -0.04 -3.77 16 11 C -0.38 -10.02 10.60 -14.81 -0.16 -10.17 16 12 H 0.11 2.93 8.05 -52.49 -0.42 2.50 16 13 C 0.04 1.05 5.50 -17.50 -0.10 0.96 16 14 N -0.83 -22.70 13.68 55.50 0.76 -21.94 16 15 Si 1.12 28.21 25.68 -169.99 -4.36 23.85 16 16 H -0.31 -7.71 7.11 56.52 0.40 -7.31 16 17 H -0.27 -6.90 6.86 56.52 0.39 -6.51 16 18 H -0.28 -7.21 7.07 56.52 0.40 -6.81 16 19 C -0.06 -1.25 11.49 -16.39 -0.19 -1.44 16 20 C -0.10 -0.87 9.45 -26.84 -0.25 -1.12 16 21 C -0.08 -0.66 2.43 -154.20 -0.38 -1.04 16 22 C -0.09 -0.66 5.80 -25.23 -0.15 -0.81 16 23 C -0.12 -0.71 6.91 -24.67 -0.17 -0.88 16 24 C -0.12 -0.84 6.84 -24.99 -0.17 -1.01 16 25 C -0.10 -0.83 6.19 -25.76 -0.16 -0.99 16 26 H 0.40 5.06 8.83 -40.82 -0.36 4.70 16 27 H 0.19 4.10 5.92 -52.49 -0.31 3.79 16 28 H 0.28 7.26 8.72 -40.82 -0.36 6.90 16 29 H 0.15 2.76 8.06 -52.49 -0.42 2.34 16 30 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.13 1.09 8.00 -51.93 -0.42 0.67 16 32 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 33 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.83 6.98 -51.93 -0.36 0.47 16 LS Contribution 333.89 15.07 5.03 5.03 Total: -1.00 -31.25 333.89 -5.64 -36.90 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -4.84 Total: 1.45 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -3.22 Total: -8.32 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: 1.67 Total: -49.56 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.08 Total: -9.34 kcal Atomic # 14 Polarization: 28.21 SS G_CDS: -4.36 Total: 23.85 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.25 -5.64 -36.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625845192.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.306 kcal (2) G-P(sol) polarization free energy of solvation -31.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds