Wall clock time and date at job start Fri Apr 10 2020 20:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.50705 * 115.55747 * 252.10985 * 3 2 1 5 5 O 1.21299 * 120.00128 * 245.68840 * 4 3 2 6 6 N 1.34775 * 119.99683 * 65.68100 * 4 3 2 7 7 C 1.40596 * 120.00128 * 180.02562 * 6 4 3 8 8 C 1.40651 * 126.07710 * 359.97438 * 7 6 4 9 9 N 1.30906 * 108.38175 * 179.77906 * 8 7 6 10 10 N 1.40066 * 108.41181 * 0.37252 * 9 8 7 11 11 C 1.37320 * 126.07612 * 179.87783 * 10 9 8 12 12 H 1.08002 * 120.00549 * 187.18061 * 11 10 9 13 13 C 1.38994 * 119.99606 * 7.18568 * 11 10 9 14 14 N 1.31298 * 120.00044 * 179.38900 * 13 11 10 15 15 Si 1.86801 * 119.99800 * 359.38367 * 13 11 10 16 16 H 1.48504 * 109.46989 * 180.02562 * 15 13 11 17 17 H 1.48496 * 109.47539 * 300.00162 * 15 13 11 18 18 H 1.48497 * 109.46864 * 60.00668 * 15 13 11 19 19 C 1.35680 * 126.08241 * 180.02562 * 7 6 4 20 20 C 1.53093 * 117.50910 * 106.39554 * 3 2 1 21 21 C 1.52546 * 117.51182 * 37.83265 * 3 2 1 22 22 C 1.53874 * 120.82688 * 357.28930 * 21 3 2 23 23 C 1.54983 * 104.06717 * 192.35964 * 22 21 3 24 24 C 1.54923 * 102.81837 * 37.56344 * 23 22 21 25 25 C 1.53481 * 121.09068 * 217.92006 * 21 3 2 26 26 H 0.97001 * 120.00164 * 0.02562 * 6 4 3 27 27 H 1.07994 * 125.80834 * 359.97438 * 8 7 6 28 28 H 0.96999 * 119.99957 * 354.70689 * 14 13 11 29 29 H 1.07997 * 126.24951 * 0.02562 * 19 7 6 30 30 H 1.08998 * 117.51007 * 359.95565 * 20 3 2 31 31 H 1.09001 * 117.51109 * 145.04508 * 20 3 2 32 32 H 1.09005 * 110.50819 * 311.00650 * 22 21 3 33 33 H 1.09003 * 110.51313 * 73.71325 * 22 21 3 34 34 H 1.09000 * 110.74617 * 279.23599 * 23 22 21 35 35 H 1.09000 * 110.90141 * 155.97231 * 23 22 21 36 36 H 1.08998 * 110.48276 * 203.59042 * 24 23 22 37 37 H 1.09004 * 110.47934 * 80.96765 * 24 23 22 38 38 H 1.09005 * 110.06709 * 263.30929 * 25 21 3 39 39 H 1.08997 * 110.07012 * 24.78318 * 25 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.2580 0.4186 1.2938 5 8 3.9094 1.4407 1.3429 6 7 3.1154 -0.3432 2.3964 7 6 3.7213 0.0469 3.6037 8 6 4.5004 1.2005 3.8045 9 7 4.8862 1.2257 5.0551 10 7 4.3780 0.0895 5.6977 11 6 4.5653 -0.2454 7.0162 12 1 4.2268 -1.2030 7.3835 13 6 5.1907 0.6479 7.8781 14 7 5.3591 0.3326 9.1414 15 14 5.7916 2.2971 7.2388 16 1 6.4187 3.0593 8.3484 17 1 6.7915 2.0767 6.1633 18 1 4.6428 3.0661 6.6967 19 6 3.6593 -0.6231 4.7819 20 6 3.3150 0.3842 -1.3026 21 6 3.3132 -1.0676 -0.8298 22 6 2.5073 -2.1402 -1.5834 23 6 3.5731 -3.1811 -2.0108 24 6 4.5325 -3.2098 -0.7948 25 6 4.5992 -1.7394 -0.3293 26 1 2.5947 -1.1607 2.3571 27 1 4.7372 1.9413 3.0552 28 1 4.9800 -0.4890 9.4909 29 1 3.1369 -1.5510 4.9622 30 1 2.6900 0.6353 -2.1596 31 1 4.2501 0.9388 -1.2236 32 1 1.7698 -2.5975 -0.9237 33 1 2.0223 -1.7086 -2.4590 34 1 4.0968 -2.8512 -2.9080 35 1 3.1197 -4.1597 -2.1681 36 1 5.5199 -3.5597 -1.0962 37 1 4.1277 -3.8420 -0.0045 38 1 5.4707 -1.2488 -0.7630 39 1 4.6467 -1.6923 0.7586 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625845192.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:31 Heat of formation + Delta-G solvation = 66.622018 kcal Electronic energy + Delta-G solvation = -23758.529804 eV Core-core repulsion = 20281.526447 eV Total energy + Delta-G solvation = -3477.003356 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.27209 -41.44193 -39.39561 -37.51113 -36.21174 -35.28742 -35.15356 -32.63483 -30.38632 -29.66166 -27.53651 -26.42504 -25.45026 -23.39733 -22.58629 -21.72599 -21.31626 -20.42066 -20.14661 -19.09457 -18.18123 -17.35359 -16.94909 -16.37206 -16.10738 -15.78597 -15.48352 -15.38342 -15.30656 -15.07612 -14.72028 -14.41872 -14.38210 -14.04086 -13.74643 -13.60054 -13.41693 -13.27698 -12.87321 -12.73592 -12.11683 -11.98069 -11.96800 -11.90091 -11.84176 -11.47213 -11.41860 -11.37625 -11.23973 -10.70358 -10.51079 -10.31802 -9.38718 -8.83705 -6.53770 0.88058 1.14540 1.32248 1.45638 1.51377 1.71436 1.88080 1.92821 2.18787 2.28843 2.41441 2.51351 2.75538 2.86069 3.33833 3.53615 3.56571 3.80712 3.87951 4.20017 4.28238 4.30948 4.51976 4.57371 4.70572 4.78135 4.81513 4.82631 4.83666 4.98406 5.00455 5.13107 5.17929 5.22282 5.31598 5.34532 5.36697 5.54176 5.76401 6.07287 6.26777 6.35598 6.47897 6.99077 7.08960 7.24601 8.08748 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.023249 B = 0.003718 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.038171 B = 7528.801606 C = 7823.567082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.266 3.734 3 C -0.086 4.086 4 C 0.553 3.447 5 O -0.545 6.545 6 N -0.609 5.609 7 C -0.035 4.035 8 C -0.001 4.001 9 N -0.387 5.387 10 N -0.181 5.181 11 C -0.392 4.392 12 H 0.115 0.885 13 C 0.010 3.990 14 N -0.860 5.860 15 Si 1.153 2.847 16 H -0.310 1.310 17 H -0.280 1.280 18 H -0.294 1.294 19 C -0.040 4.040 20 C -0.089 4.089 21 C -0.059 4.059 22 C -0.095 4.095 23 C -0.114 4.114 24 C -0.121 4.121 25 C -0.101 4.101 26 H 0.419 0.581 27 H 0.191 0.809 28 H 0.280 0.720 29 H 0.189 0.811 30 H 0.138 0.862 31 H 0.127 0.873 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.107 -8.662 -24.187 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.051 4.051 3 C -0.093 4.093 4 C 0.338 3.662 5 O -0.422 6.422 6 N -0.253 5.253 7 C -0.140 4.140 8 C -0.174 4.174 9 N -0.222 5.222 10 N 0.052 4.948 11 C -0.523 4.523 12 H 0.133 0.867 13 C -0.201 4.201 14 N -0.489 5.489 15 Si 0.984 3.016 16 H -0.240 1.240 17 H -0.208 1.208 18 H -0.222 1.222 19 C -0.193 4.193 20 C -0.127 4.127 21 C -0.061 4.061 22 C -0.132 4.132 23 C -0.151 4.151 24 C -0.159 4.159 25 C -0.139 4.139 26 H 0.256 0.744 27 H 0.208 0.792 28 H 0.091 0.909 29 H 0.206 0.794 30 H 0.156 0.844 31 H 0.145 0.855 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.927 -6.027 -22.715 23.683 hybrid contribution -1.385 -2.203 -0.100 2.604 sum -4.312 -8.230 -22.815 24.635 Atomic orbital electron populations 1.81296 1.12516 1.10104 1.08222 1.27244 0.92598 0.92237 0.93033 1.18335 0.82285 1.14577 0.94140 1.19133 0.80799 0.83012 0.83251 1.90615 1.41960 1.25428 1.84206 1.42419 1.50495 1.26207 1.06168 1.17152 1.10176 0.99505 0.87189 1.23988 1.00757 0.99502 0.93204 1.76040 1.28303 1.08979 1.08846 1.44784 1.29008 1.13428 1.07599 1.21138 1.44036 1.05824 0.81324 0.86705 1.27444 0.93189 1.06211 0.93260 1.70908 1.37866 1.26544 1.13572 0.82065 0.77284 0.70674 0.71585 1.24030 1.20752 1.22153 1.22035 1.06035 1.02346 0.88857 1.23590 1.01968 0.96115 0.91028 1.22290 0.96848 0.90915 0.96082 1.22078 0.97393 0.94362 0.99363 1.22459 0.95757 0.98816 0.98065 1.22363 1.00759 0.94522 0.98216 1.21851 0.94741 0.96636 1.00665 0.74411 0.79204 0.90883 0.79390 0.84393 0.85518 0.91108 0.89696 0.89923 0.90173 0.90329 0.91460 0.89716 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -11.99 18.54 20.01 0.37 -11.62 16 2 C 0.27 6.05 14.33 89.44 1.28 7.34 16 3 C -0.09 -1.71 2.36 -54.85 -0.13 -1.83 16 4 C 0.55 15.61 5.86 87.66 0.51 16.13 16 5 O -0.55 -19.11 13.86 -3.09 -0.04 -19.15 16 6 N -0.61 -17.68 5.13 -303.92 -1.56 -19.24 16 7 C -0.03 -1.36 6.90 37.73 0.26 -1.10 16 8 C 0.00 -0.05 10.85 85.42 0.93 0.88 16 9 N -0.39 -20.01 7.17 -56.47 -0.40 -20.41 16 10 N -0.18 -9.15 3.68 -190.01 -0.70 -9.85 16 11 C -0.39 -21.04 10.60 84.01 0.89 -20.15 16 12 H 0.12 5.96 8.05 -2.91 -0.02 5.94 16 13 C 0.01 0.53 5.50 84.95 0.47 0.99 16 14 N -0.86 -48.05 13.68 21.66 0.30 -47.75 16 15 Si 1.15 58.65 25.68 68.60 1.76 60.41 16 16 H -0.31 -15.22 7.11 99.48 0.71 -14.52 16 17 H -0.28 -14.32 6.86 99.48 0.68 -13.64 16 18 H -0.29 -15.24 7.07 99.48 0.70 -14.53 16 19 C -0.04 -1.66 11.49 83.37 0.96 -0.70 16 20 C -0.09 -1.22 9.45 30.52 0.29 -0.93 16 21 C -0.06 -0.81 2.43 -51.98 -0.13 -0.94 16 22 C -0.09 -0.98 5.80 31.57 0.18 -0.79 16 23 C -0.11 -0.91 6.91 31.93 0.22 -0.69 16 24 C -0.12 -1.30 6.84 31.72 0.22 -1.08 16 25 C -0.10 -1.46 6.19 31.22 0.19 -1.27 16 26 H 0.42 9.38 8.83 -92.71 -0.82 8.56 16 27 H 0.19 8.38 5.92 -2.91 -0.02 8.36 16 28 H 0.28 14.93 8.72 -92.71 -0.81 14.12 16 29 H 0.19 6.21 8.06 -2.91 -0.02 6.19 16 30 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.13 1.81 8.00 -2.39 -0.02 1.79 16 32 H 0.07 0.83 8.08 -2.38 -0.02 0.81 16 33 H 0.08 0.72 8.11 -2.39 -0.02 0.70 16 34 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.06 1.11 6.98 -2.39 -0.02 1.09 16 Total: -1.00 -68.14 333.89 6.08 -62.07 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.21 Total: 9.70 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 6.14 Total: -4.15 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -2.00 Total: -108.87 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.04 Total: -19.15 kcal Atomic # 14 Polarization: 58.65 SS G_CDS: 1.76 Total: 60.41 kcal Total: -68.14 6.08 -62.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625845192.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.689 kcal (2) G-P(sol) polarization free energy of solvation -68.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds