Wall clock time and date at job start Fri Apr 10 2020 20:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.50700 * 115.59451 * 141.36781 * 3 2 1 5 5 O 1.21307 * 119.99789 * 214.15042 * 4 3 2 6 6 N 1.34774 * 120.00070 * 34.15249 * 4 3 2 7 7 C 1.40592 * 119.99779 * 179.97438 * 6 4 3 8 8 C 1.40649 * 126.08372 * 359.69101 * 7 6 4 9 9 N 1.30914 * 108.38503 * 179.81549 * 8 7 6 10 10 N 1.40071 * 108.40627 * 0.44248 * 9 8 7 11 11 C 1.37324 * 126.06829 * 179.73803 * 10 9 8 12 12 H 1.07994 * 120.00366 * 179.97438 * 11 10 9 13 13 C 1.38994 * 119.99851 * 359.97438 * 11 10 9 14 14 N 1.31297 * 119.99887 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99667 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47168 * 59.99857 * 15 13 11 17 17 H 1.48499 * 109.46932 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47269 * 299.99771 * 15 13 11 19 19 C 1.35688 * 126.08140 * 180.02562 * 7 6 4 20 20 C 1.53230 * 117.52859 * 287.21787 * 3 2 1 21 21 C 1.51880 * 117.52894 * 355.52031 * 3 2 1 22 22 C 1.53839 * 122.06215 * 4.01357 * 21 3 2 23 23 C 1.54459 * 104.05044 * 180.02562 * 22 21 3 24 24 C 1.53947 * 106.70126 * 337.53769 * 23 22 21 25 25 C 1.53833 * 122.06285 * 141.16556 * 21 3 2 26 26 H 0.96996 * 119.99750 * 359.97438 * 6 4 3 27 27 H 1.08000 * 125.80440 * 359.97438 * 8 7 6 28 28 H 0.97002 * 119.99384 * 180.02562 * 14 13 11 29 29 H 1.07998 * 126.24351 * 359.97339 * 19 7 6 30 30 H 1.09004 * 117.52832 * 0.02562 * 20 3 2 31 31 H 1.08999 * 117.57937 * 214.78940 * 20 3 2 32 32 H 1.09004 * 110.51625 * 61.43307 * 22 21 3 33 33 H 1.09007 * 110.51580 * 298.71884 * 22 21 3 34 34 H 1.08997 * 110.01314 * 218.23108 * 23 22 21 35 35 H 1.09003 * 110.01507 * 96.85294 * 23 22 21 36 36 H 1.09002 * 110.01017 * 119.31583 * 24 23 22 37 37 H 1.08999 * 110.01186 * 240.64390 * 24 23 22 38 38 H 1.09000 * 110.51205 * 61.28754 * 25 21 3 39 39 H 1.08996 * 110.63442 * 298.62926 * 25 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2585 1.0627 -0.8485 5 8 4.3048 0.8288 -1.4162 6 7 2.6780 2.2722 -0.9766 7 6 3.2853 3.2631 -1.7678 8 6 4.4949 3.1336 -2.4736 9 7 4.7333 4.2610 -3.0948 10 7 3.6949 5.1548 -2.8032 11 6 3.5850 6.4441 -3.2628 12 1 2.7384 7.0497 -2.9750 13 6 4.5635 6.9698 -4.0984 14 7 5.5930 6.2338 -4.4479 15 14 4.4143 8.7239 -4.7230 16 1 4.3868 9.6593 -3.5699 17 1 5.5776 9.0414 -5.5896 18 1 3.1602 8.8658 -5.5055 19 6 2.8118 4.5167 -1.9812 20 6 3.3164 -0.4012 1.2979 21 6 3.3106 -1.3418 0.1052 22 6 2.5353 -2.6705 0.1177 23 6 3.6372 -3.7464 0.2363 24 6 4.9391 -3.1047 -0.2767 25 6 4.5887 -1.6590 -0.6899 26 1 1.8413 2.4590 -0.5229 27 1 5.1194 2.2528 -2.5008 28 1 6.2760 6.6008 -5.0307 29 1 1.9018 4.9332 -1.5752 30 1 2.6922 -0.6664 2.1513 31 1 4.2530 0.1018 1.5383 32 1 1.9779 -2.7963 -0.8105 33 1 1.8646 -2.7133 0.9759 34 1 3.3813 -4.6113 -0.3757 35 1 3.7545 -4.0471 1.2774 36 1 5.6874 -3.0945 0.5158 37 1 5.3146 -3.6592 -1.1368 38 1 5.3913 -0.9763 -0.4111 39 1 4.3977 -1.6051 -1.7616 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625845193.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:36 Heat of formation + Delta-G solvation = 98.967967 kcal Electronic energy + Delta-G solvation = -23484.008616 eV Core-core repulsion = 20008.407885 eV Total energy + Delta-G solvation = -3475.600731 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.80405 -39.56089 -37.93775 -36.51281 -34.41471 -34.15567 -33.16840 -30.27965 -28.89472 -28.14288 -26.38579 -25.32542 -24.38879 -21.61151 -20.96979 -20.33091 -19.74457 -19.34412 -18.12459 -17.19204 -16.26714 -15.67298 -15.47907 -15.19245 -14.86470 -14.49788 -14.32694 -13.84385 -13.67961 -13.33342 -13.12723 -13.09624 -12.94404 -12.93234 -12.47742 -12.36236 -11.69662 -11.49047 -11.41697 -11.26577 -11.21261 -11.08698 -10.95393 -10.57120 -10.54617 -10.46103 -10.19052 -10.16302 -9.24777 -9.19417 -8.84338 -8.09217 -6.75225 -6.57771 -4.25229 2.16153 2.45938 2.74301 2.99767 3.03790 3.07969 3.30410 3.45329 3.56843 3.76112 3.83454 4.30266 4.34687 4.39739 4.59510 4.63600 4.74426 4.94501 5.00345 5.06771 5.33971 5.36266 5.40398 5.48120 5.55268 5.68996 5.69890 5.83468 5.93272 6.06499 6.22087 6.31876 6.38535 6.40584 6.84356 6.91487 7.03405 7.19899 7.31539 7.82584 8.07697 8.22828 8.55170 8.74895 9.34516 9.63671 10.38084 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.030501 B = 0.003171 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.786193 B = 8826.806754 C = 9521.230195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C 0.243 3.757 3 C -0.072 4.072 4 C 0.544 3.456 5 O -0.514 6.514 6 N -0.614 5.614 7 C -0.063 4.063 8 C -0.030 4.030 9 N -0.260 5.260 10 N -0.140 5.140 11 C -0.323 4.323 12 H 0.116 0.884 13 C 0.047 3.953 14 N -0.769 5.769 15 Si 0.935 3.065 16 H -0.267 1.267 17 H -0.276 1.276 18 H -0.267 1.267 19 C -0.082 4.082 20 C -0.109 4.109 21 C -0.065 4.065 22 C -0.094 4.094 23 C -0.119 4.119 24 C -0.126 4.126 25 C -0.075 4.075 26 H 0.396 0.604 27 H 0.178 0.822 28 H 0.276 0.724 29 H 0.145 0.855 30 H 0.112 0.888 31 H 0.122 0.878 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.791 -13.883 10.233 17.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.091 5.091 2 C -0.075 4.075 3 C -0.080 4.080 4 C 0.328 3.672 5 O -0.390 6.390 6 N -0.255 5.255 7 C -0.168 4.168 8 C -0.205 4.205 9 N -0.091 5.091 10 N 0.092 4.908 11 C -0.456 4.456 12 H 0.134 0.866 13 C -0.171 4.171 14 N -0.395 5.395 15 Si 0.759 3.241 16 H -0.191 1.191 17 H -0.201 1.201 18 H -0.192 1.192 19 C -0.233 4.233 20 C -0.147 4.147 21 C -0.067 4.067 22 C -0.131 4.131 23 C -0.156 4.156 24 C -0.164 4.164 25 C -0.112 4.112 26 H 0.229 0.771 27 H 0.194 0.806 28 H 0.086 0.914 29 H 0.163 0.837 30 H 0.130 0.870 31 H 0.141 0.859 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.746 -13.391 8.882 16.302 hybrid contribution -1.012 0.615 0.521 1.294 sum -3.758 -12.776 9.403 16.303 Atomic orbital electron populations 1.81263 1.11637 1.07845 1.08358 1.27415 0.92937 0.93694 0.93449 1.18406 0.82597 1.01042 1.05920 1.18500 0.85214 0.81493 0.82039 1.90631 1.22495 1.79374 1.46459 1.42428 1.24597 1.11188 1.47305 1.17234 1.00084 0.89937 1.09543 1.24103 0.96832 0.98780 1.00802 1.78264 1.09236 0.98239 1.23369 1.44541 1.11881 1.08921 1.25431 1.19841 1.10267 0.85453 1.29997 0.86649 1.25638 0.94786 1.00505 0.96124 1.70205 1.07302 1.35636 1.26394 0.85892 0.78637 0.80454 0.79165 1.19145 1.20098 1.19159 1.21261 1.00514 0.93730 1.07797 1.23202 1.01792 1.00120 0.89626 1.21806 0.97907 0.87774 0.99230 1.21902 0.97190 0.91665 1.02341 1.22099 0.94660 0.97561 1.01295 1.22211 0.97145 0.96116 1.00909 1.21788 0.94253 0.95220 0.99985 0.77121 0.80564 0.91373 0.83737 0.86953 0.85938 0.90644 0.91403 0.91675 0.91656 0.91673 0.91610 0.89767 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.07 18.54 42.15 0.78 -5.29 16 2 C 0.24 3.16 13.61 -20.76 -0.28 2.88 16 3 C -0.07 -0.88 2.50 -158.90 -0.40 -1.28 16 4 C 0.54 8.92 7.34 -10.99 -0.08 8.84 16 5 O -0.51 -9.63 11.07 5.53 0.06 -9.57 16 6 N -0.61 -10.93 5.37 -10.00 -0.05 -10.98 16 7 C -0.06 -1.42 6.90 -83.84 -0.58 -2.00 16 8 C -0.03 -0.75 10.85 -17.03 -0.18 -0.94 16 9 N -0.26 -7.43 10.40 30.80 0.32 -7.11 16 10 N -0.14 -3.83 3.74 -11.41 -0.04 -3.87 16 11 C -0.32 -8.51 10.25 -14.81 -0.15 -8.66 16 12 H 0.12 2.71 7.83 -52.49 -0.41 2.30 16 13 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 14 N -0.77 -21.25 11.81 55.50 0.66 -20.59 16 15 Si 0.93 18.80 29.55 -169.99 -5.02 13.78 16 16 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 17 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 18 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 19 C -0.08 -1.93 11.49 -16.39 -0.19 -2.11 16 20 C -0.11 -0.98 9.71 -27.17 -0.26 -1.24 16 21 C -0.07 -0.66 2.18 -154.77 -0.34 -1.00 16 22 C -0.09 -0.82 5.92 -25.53 -0.15 -0.97 16 23 C -0.12 -0.88 6.81 -25.47 -0.17 -1.05 16 24 C -0.13 -1.05 6.81 -25.51 -0.17 -1.22 16 25 C -0.08 -0.82 4.77 -25.57 -0.12 -0.94 16 26 H 0.40 6.01 8.10 -40.82 -0.33 5.68 16 27 H 0.18 4.34 5.92 -52.49 -0.31 4.02 16 28 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.15 2.88 8.06 -52.49 -0.42 2.46 16 30 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 1.01 7.44 -51.93 -0.39 0.62 16 39 H 0.08 1.04 7.84 -51.93 -0.41 0.63 16 LS Contribution 335.05 15.07 5.05 5.05 Total: -1.00 -31.75 335.05 -6.22 -37.97 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -4.78 Total: 9.21 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -3.18 Total: -8.60 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 1.66 Total: -47.83 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.06 Total: -9.57 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.78 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.75 -6.22 -37.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625845193.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.934 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds