Wall clock time and date at job start Fri Apr 10 2020 20:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00003 * 2 1 4 4 H 1.48502 * 109.47219 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47001 * 300.00473 * 3 2 1 6 6 H 1.48506 * 109.46992 * 60.00325 * 3 2 1 7 7 C 1.37878 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99921 * 186.10369 * 7 2 1 9 9 C 1.50692 * 119.99925 * 6.38767 * 7 2 1 10 10 H 1.09005 * 109.47128 * 184.34224 * 9 7 2 11 11 C 1.50692 * 109.47178 * 304.33840 * 9 7 2 12 12 O 1.21291 * 120.00247 * 119.99939 * 11 9 7 13 13 N 1.34777 * 120.00414 * 300.00482 * 11 9 7 14 14 C 1.46503 * 120.00592 * 180.02562 * 13 11 9 15 15 C 1.52995 * 109.47173 * 179.97438 * 14 13 11 16 16 N 1.46506 * 109.46886 * 179.97438 * 15 14 13 17 17 C 1.35487 * 126.97780 * 269.68358 * 16 15 14 18 18 N 1.30523 * 107.30977 * 179.83724 * 17 16 15 19 19 N 1.28604 * 109.66872 * 0.43786 * 18 17 16 20 20 C 1.30522 * 109.66968 * 359.72639 * 19 18 17 21 21 C 1.50703 * 109.47243 * 64.34072 * 9 7 2 22 22 C 1.38240 * 119.99704 * 193.10945 * 21 9 7 23 23 C 1.38241 * 119.99504 * 179.80760 * 22 21 9 24 24 C 1.38230 * 120.00041 * 0.40109 * 23 22 21 25 25 C 1.38241 * 119.99902 * 359.85802 * 24 23 22 26 26 C 1.38222 * 120.00123 * 359.95141 * 25 24 23 27 27 H 0.96997 * 119.99941 * 359.97438 * 1 2 3 28 28 H 0.97002 * 119.99844 * 359.97438 * 13 11 9 29 29 H 1.09005 * 109.46591 * 299.99658 * 14 13 11 30 30 H 1.08998 * 109.47094 * 59.99016 * 14 13 11 31 31 H 1.08995 * 109.47004 * 299.99319 * 15 14 13 32 32 H 1.08999 * 109.47496 * 59.99990 * 15 14 13 33 33 H 1.08005 * 126.35167 * 359.97438 * 17 16 15 34 34 H 1.08004 * 126.34338 * 179.97438 * 20 19 18 35 35 H 1.07996 * 120.00455 * 0.02562 * 22 21 9 36 36 H 1.07996 * 119.99510 * 180.22987 * 23 22 21 37 37 H 1.08003 * 119.99824 * 179.82874 * 24 23 22 38 38 H 1.08005 * 119.99490 * 179.97438 * 25 24 23 39 39 H 1.08003 * 119.99928 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0799 -1.1967 0.0989 9 6 1.2581 -2.4950 -0.1463 10 1 1.9553 -3.3270 -0.0474 11 6 0.2043 -2.5924 0.9265 12 8 -0.9649 -2.6950 0.6207 13 7 0.5610 -2.5655 2.2260 14 6 -0.4634 -2.6608 3.2690 15 6 0.2033 -2.6072 4.6450 16 7 -0.8212 -2.7019 5.6880 17 6 -1.4822 -1.6761 6.2766 18 7 -2.3072 -2.1935 7.1457 19 7 -2.1939 -3.4745 7.1407 20 6 -1.2957 -3.8327 6.2641 21 6 0.6014 -2.5483 -1.5017 22 6 -0.3553 -3.5096 -1.7689 23 6 -0.9605 -3.5560 -3.0109 24 6 -0.6029 -2.6463 -3.9883 25 6 0.3577 -1.6883 -3.7228 26 6 0.9600 -1.6395 -2.4797 27 1 -0.4850 0.8400 0.0004 28 1 1.4961 -2.4838 2.4706 29 1 -1.1609 -1.8291 3.1701 30 1 -1.0029 -3.6020 3.1634 31 1 0.9006 -3.4391 4.7435 32 1 0.7431 -1.6662 4.7508 33 1 -1.3524 -0.6251 6.0643 34 1 -0.9875 -4.8433 6.0397 35 1 -0.6325 -4.2222 -1.0062 36 1 -1.7106 -4.3047 -3.2184 37 1 -1.0738 -2.6843 -4.9596 38 1 0.6373 -0.9778 -4.4867 39 1 1.7102 -0.8908 -2.2721 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001640993393.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:47 Heat of formation + Delta-G solvation = 73.405303 kcal Electronic energy + Delta-G solvation = -23771.228837 eV Core-core repulsion = 20294.519626 eV Total energy + Delta-G solvation = -3476.709211 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.11596 -39.11829 -37.66859 -35.92357 -33.72826 -33.40113 -30.96189 -30.60229 -29.79303 -29.18014 -27.19254 -24.40425 -23.46395 -22.32459 -21.82171 -21.35832 -20.66031 -19.44434 -17.52631 -16.86385 -16.41054 -15.75431 -15.47719 -15.22347 -15.08547 -14.96447 -14.66179 -14.38437 -13.96938 -13.71808 -13.25683 -12.71933 -12.43056 -12.33208 -12.24680 -12.10924 -11.56631 -11.48671 -11.35763 -11.08573 -10.84225 -10.56947 -10.43871 -10.29948 -10.13706 -9.80082 -9.49548 -9.46305 -8.88982 -8.43240 -8.25099 -7.80227 -7.51692 -6.28412 -4.42874 1.76798 2.33555 2.45598 2.50015 2.87458 3.08845 3.21228 3.21442 3.95703 4.11546 4.25368 4.38319 4.53350 4.65048 4.69739 4.90700 5.00964 5.03242 5.26024 5.54856 5.77297 5.84292 5.88969 5.94441 5.97098 6.09216 6.26315 6.42256 6.57217 6.68445 6.75631 6.77486 7.02191 7.10191 7.25901 7.45296 7.52929 7.56926 7.66556 8.04066 8.15378 8.41821 8.64979 8.66737 9.24268 9.53297 10.73358 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.016156 B = 0.004225 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.737986 B = 6625.562928 C = 7834.507672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.076 3.924 3 Si 0.884 3.116 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.284 1.284 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.058 3.942 10 H 0.058 0.942 11 C 0.556 3.444 12 O -0.543 6.543 13 N -0.735 5.735 14 C 0.116 3.884 15 C 0.095 3.905 16 N -0.469 5.469 17 C 0.157 3.843 18 N -0.304 5.304 19 N -0.304 5.304 20 C 0.152 3.848 21 C -0.018 4.018 22 C -0.100 4.100 23 C -0.143 4.143 24 C -0.144 4.144 25 C -0.146 4.146 26 C -0.074 4.074 27 H 0.266 0.734 28 H 0.397 0.603 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.218 0.782 34 H 0.217 0.783 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.471 -4.921 4.042 7.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.132 4.132 3 Si 0.711 3.289 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.580 4.580 8 H 0.086 0.914 9 C 0.036 3.964 10 H 0.076 0.924 11 C 0.346 3.654 12 O -0.419 6.419 13 N -0.390 5.390 14 C -0.010 4.010 15 C -0.028 4.028 16 N -0.160 5.160 17 C -0.131 4.131 18 N -0.143 5.143 19 N -0.143 5.143 20 C -0.136 4.136 21 C -0.019 4.019 22 C -0.118 4.118 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.164 4.164 26 C -0.091 4.091 27 H 0.076 0.924 28 H 0.231 0.769 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.234 0.766 34 H 0.234 0.766 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.356 -4.967 4.869 7.344 hybrid contribution 1.651 1.438 -0.991 2.403 sum 4.007 -3.530 3.878 6.599 Atomic orbital electron populations 1.70024 1.05514 1.27075 1.44877 1.25053 0.94782 0.99239 0.94102 0.86654 0.80357 0.83870 0.78010 1.19402 1.20614 1.21009 1.20736 0.93470 0.88833 1.54941 0.91350 1.17871 0.92362 0.98363 0.87771 0.92360 1.21033 0.90464 0.71701 0.82234 1.90558 1.20425 1.49099 1.81815 1.45631 1.08972 1.78957 1.05472 1.21261 0.92351 1.02553 0.84862 1.22187 0.88888 1.05849 0.85883 1.46417 1.31901 1.07261 1.30413 1.26588 0.94447 0.96732 0.95340 1.74248 1.19556 1.01638 1.18870 1.74235 1.16162 1.05422 1.18482 1.26534 0.97366 0.93963 0.95737 1.19838 0.94332 0.92506 0.95215 1.20989 0.96408 0.99132 0.95257 1.20854 1.00893 0.99917 0.94408 1.20804 0.99535 0.97380 0.98472 1.21012 0.98787 0.99122 0.97523 1.21177 0.99106 0.97420 0.91443 0.92402 0.76916 0.91494 0.92044 0.87851 0.87627 0.76600 0.76637 0.87411 0.87966 0.88062 0.87903 0.85418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.66 11.11 55.43 0.62 -21.04 16 2 C 0.08 1.79 3.90 -17.82 -0.07 1.73 16 3 Si 0.88 18.56 29.54 -169.99 -5.02 13.53 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -12.13 7.11 -34.44 -0.24 -12.38 16 8 H 0.07 1.49 7.82 -52.49 -0.41 1.08 16 9 C 0.06 1.24 2.78 -94.08 -0.26 0.98 16 10 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 11 C 0.56 11.90 5.28 -10.99 -0.06 11.84 16 12 O -0.54 -13.57 13.86 5.55 0.08 -13.49 16 13 N -0.74 -12.10 5.46 -60.29 -0.33 -12.43 16 14 C 0.12 1.62 6.00 -4.04 -0.02 1.60 16 15 C 0.10 0.88 6.31 -4.04 -0.03 0.85 16 16 N -0.47 -5.10 2.75 -119.97 -0.33 -5.43 16 17 C 0.16 1.91 12.74 -89.95 -1.15 0.76 16 18 N -0.30 -4.67 12.21 29.69 0.36 -4.31 16 19 N -0.30 -4.57 12.21 29.69 0.36 -4.21 16 20 C 0.15 1.73 12.74 -89.95 -1.15 0.58 16 21 C -0.02 -0.40 4.63 -104.62 -0.48 -0.89 16 22 C -0.10 -2.15 8.21 -39.58 -0.32 -2.48 16 23 C -0.14 -2.81 10.05 -39.58 -0.40 -3.20 16 24 C -0.14 -2.73 10.05 -39.58 -0.40 -3.13 16 25 C -0.15 -2.93 10.05 -39.59 -0.40 -3.32 16 26 C -0.07 -1.63 8.46 -39.59 -0.33 -1.97 16 27 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 28 H 0.40 5.57 8.36 -40.82 -0.34 5.22 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.22 1.92 8.06 -52.48 -0.42 1.50 16 34 H 0.22 1.56 8.06 -52.48 -0.42 1.13 16 35 H 0.11 2.29 6.98 -52.49 -0.37 1.93 16 36 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 38 H 0.10 1.80 8.06 -52.48 -0.42 1.37 16 39 H 0.13 2.90 6.05 -52.48 -0.32 2.58 16 LS Contribution 335.29 15.07 5.05 5.05 Total: -1.00 -32.06 335.29 -9.32 -41.38 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -4.80 Total: 9.98 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -5.31 Total: -9.02 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: 0.68 Total: -47.43 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.08 Total: -13.49 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.02 Total: 13.53 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.06 -9.32 -41.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001640993393.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.783 kcal (2) G-P(sol) polarization free energy of solvation -32.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds