Wall clock time and date at job start Fri Apr 10 2020 20:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00153 * 2 1 4 4 H 1.48495 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46977 * 299.99883 * 3 2 1 6 6 H 1.48496 * 109.47065 * 59.99599 * 3 2 1 7 7 C 1.37879 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99762 * 181.96894 * 7 2 1 9 9 C 1.50696 * 119.99977 * 1.97120 * 7 2 1 10 10 H 1.09001 * 109.46910 * 175.33757 * 9 7 2 11 11 C 1.50695 * 109.47530 * 55.33425 * 9 7 2 12 12 O 1.21283 * 120.00501 * 240.00352 * 11 9 7 13 13 N 1.34779 * 120.00080 * 59.99483 * 11 9 7 14 14 C 1.46503 * 120.00328 * 180.02562 * 13 11 9 15 15 C 1.53000 * 109.46980 * 180.02562 * 14 13 11 16 16 N 1.46499 * 109.46647 * 179.97438 * 15 14 13 17 17 C 1.35493 * 126.98432 * 269.68360 * 16 15 14 18 18 N 1.30518 * 107.31042 * 179.84060 * 17 16 15 19 19 N 1.28597 * 109.67127 * 0.43956 * 18 17 16 20 20 C 1.30524 * 109.67081 * 359.72275 * 19 18 17 21 21 C 1.50707 * 109.47387 * 295.33233 * 9 7 2 22 22 C 1.38224 * 120.00104 * 167.22650 * 21 9 7 23 23 C 1.38237 * 120.00255 * 180.02562 * 22 21 9 24 24 C 1.38238 * 119.99745 * 359.95072 * 23 22 21 25 25 C 1.38236 * 119.99912 * 0.02562 * 24 23 22 26 26 C 1.38232 * 119.99717 * 347.20513 * 21 9 7 27 27 H 0.97003 * 120.00319 * 0.02562 * 1 2 3 28 28 H 0.97004 * 119.99602 * 0.02562 * 13 11 9 29 29 H 1.09000 * 109.46951 * 300.00008 * 14 13 11 30 30 H 1.09001 * 109.46665 * 60.00067 * 14 13 11 31 31 H 1.08997 * 109.47375 * 300.00159 * 15 14 13 32 32 H 1.09001 * 109.47013 * 60.00479 * 15 14 13 33 33 H 1.08000 * 126.34375 * 359.97438 * 17 16 15 34 34 H 1.07998 * 126.34350 * 179.97438 * 20 19 18 35 35 H 1.08000 * 120.00315 * 359.97438 * 22 21 9 36 36 H 1.07994 * 120.00683 * 179.97438 * 23 22 21 37 37 H 1.08001 * 120.00281 * 179.72897 * 24 23 22 38 38 H 1.07996 * 120.00326 * 179.97438 * 25 24 23 39 39 H 1.08001 * 120.00068 * 359.97438 * 26 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0840 -1.1944 0.0327 9 6 1.2516 -2.4988 -0.0438 10 1 1.9594 -3.3242 -0.1201 11 6 0.3358 -2.5100 -1.2405 12 8 -0.8613 -2.6297 -1.0870 13 7 0.8470 -2.3867 -2.4814 14 6 -0.0433 -2.3970 -3.6449 15 6 0.7848 -2.2430 -4.9221 16 7 -0.1055 -2.2540 -6.0855 17 6 -0.4973 -3.3352 -6.8020 18 7 -1.2890 -2.9083 -7.7477 19 7 -1.4064 -1.6301 -7.6698 20 6 -0.6996 -1.1842 -6.6672 21 6 0.4360 -2.6512 1.2143 22 6 -0.5369 -3.6298 1.2930 23 6 -1.2854 -3.7693 2.4468 24 6 -1.0601 -2.9306 3.5224 25 6 -0.0867 -1.9523 3.4439 26 6 0.6614 -1.8125 2.2898 27 1 -0.4851 0.8400 -0.0004 28 1 1.8045 -2.2911 -2.6042 29 1 -0.5881 -3.3405 -3.6770 30 1 -0.7507 -1.5713 -3.5682 31 1 1.3300 -1.2998 -4.8902 32 1 1.4919 -3.0691 -4.9985 33 1 -0.2096 -4.3606 -6.6223 34 1 -0.6055 -0.1535 -6.3587 35 1 -0.7130 -4.2850 0.4527 36 1 -2.0459 -4.5336 2.5081 37 1 -1.6478 -3.0367 4.4222 38 1 0.0891 -1.2968 4.2840 39 1 1.4221 -1.0484 2.2287 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001640993402.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:51 Heat of formation + Delta-G solvation = 73.503485 kcal Electronic energy + Delta-G solvation = -23773.564514 eV Core-core repulsion = 20296.859561 eV Total energy + Delta-G solvation = -3476.704954 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.13206 -39.13440 -37.66256 -35.94697 -33.74014 -33.43673 -30.93913 -30.61698 -29.74371 -29.20271 -27.19594 -24.40523 -23.46906 -22.34035 -21.83928 -21.33201 -20.65437 -19.46349 -17.54443 -16.87186 -16.41043 -15.74745 -15.49592 -15.25050 -15.09733 -14.96343 -14.68641 -14.40959 -13.95816 -13.68901 -13.27163 -12.73217 -12.40888 -12.35584 -12.22585 -12.10171 -11.57839 -11.51222 -11.34893 -11.10065 -10.84187 -10.56084 -10.45236 -10.31869 -10.12950 -9.77719 -9.48258 -9.47704 -8.85020 -8.48929 -8.30316 -7.76253 -7.48055 -6.26164 -4.43483 1.75183 2.32169 2.48932 2.54908 2.86142 3.08317 3.20526 3.20858 3.92202 4.09111 4.22118 4.36085 4.51862 4.62847 4.67016 4.94561 4.99865 5.02144 5.24580 5.52294 5.80392 5.82731 5.89866 5.92552 6.00011 6.07402 6.28226 6.41858 6.60370 6.69689 6.74134 6.79719 7.05502 7.14122 7.21296 7.48708 7.56213 7.57795 7.68729 8.07761 8.18511 8.38352 8.64078 8.65386 9.23927 9.48138 10.74006 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.016004 B = 0.004253 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.102579 B = 6582.345926 C = 7806.277830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.074 3.926 3 Si 0.886 3.114 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.058 3.942 10 H 0.058 0.942 11 C 0.552 3.448 12 O -0.541 6.541 13 N -0.737 5.737 14 C 0.115 3.885 15 C 0.095 3.905 16 N -0.469 5.469 17 C 0.152 3.848 18 N -0.303 5.303 19 N -0.303 5.303 20 C 0.157 3.843 21 C -0.016 4.016 22 C -0.101 4.101 23 C -0.144 4.144 24 C -0.144 4.144 25 C -0.148 4.148 26 C -0.065 4.065 27 H 0.265 0.735 28 H 0.398 0.602 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.217 0.783 34 H 0.218 0.782 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.020 -4.565 -4.175 7.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.134 4.134 3 Si 0.713 3.287 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.207 1.207 7 C -0.579 4.579 8 H 0.087 0.913 9 C 0.037 3.963 10 H 0.076 0.924 11 C 0.342 3.658 12 O -0.417 6.417 13 N -0.392 5.392 14 C -0.011 4.011 15 C -0.028 4.028 16 N -0.160 5.160 17 C -0.136 4.136 18 N -0.143 5.143 19 N -0.143 5.143 20 C -0.131 4.131 21 C -0.017 4.017 22 C -0.119 4.119 23 C -0.162 4.162 24 C -0.162 4.162 25 C -0.166 4.166 26 C -0.082 4.082 27 H 0.075 0.925 28 H 0.232 0.768 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.234 0.766 34 H 0.234 0.766 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.018 -4.538 -5.240 7.560 hybrid contribution 1.504 1.351 1.146 2.324 sum 4.522 -3.187 -4.093 6.882 Atomic orbital electron populations 1.70081 1.05463 1.27005 1.44869 1.25070 0.94805 0.99247 0.94295 0.86622 0.80267 0.83830 0.77984 1.19448 1.20984 1.20713 1.20740 0.92988 0.88628 1.55559 0.91337 1.17874 0.92652 0.98314 0.87474 0.92369 1.21132 0.89278 0.72050 0.83378 1.90568 1.16708 1.49002 1.85406 1.45678 1.09814 1.78663 1.05008 1.21278 0.93355 1.02602 0.83899 1.22184 0.91795 1.05973 0.82866 1.46416 1.37145 1.07715 1.24751 1.26538 0.99257 0.95234 0.92547 1.74232 1.16217 1.03836 1.19985 1.74248 1.19593 1.03337 1.17098 1.26589 0.96672 0.95687 0.94180 1.19785 0.94683 0.92363 0.94914 1.20960 0.96003 0.98856 0.96080 1.20830 1.00570 1.00384 0.94448 1.20789 0.99498 0.97733 0.98153 1.21002 0.98194 0.99004 0.98375 1.21140 0.98490 0.97184 0.91426 0.92455 0.76824 0.91942 0.91530 0.87615 0.87796 0.76623 0.76600 0.87571 0.88063 0.88151 0.87996 0.85441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.67 10.89 55.43 0.60 -21.06 16 2 C 0.07 1.73 3.99 -17.82 -0.07 1.66 16 3 Si 0.89 18.49 29.54 -169.99 -5.02 13.47 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -12.09 7.12 -34.44 -0.25 -12.34 16 8 H 0.07 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.06 1.25 2.78 -94.08 -0.26 0.99 16 10 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 11 C 0.55 11.76 5.45 -10.99 -0.06 11.70 16 12 O -0.54 -13.49 13.95 5.55 0.08 -13.41 16 13 N -0.74 -11.99 5.46 -60.29 -0.33 -12.32 16 14 C 0.11 1.58 6.00 -4.04 -0.02 1.56 16 15 C 0.10 0.86 6.31 -4.04 -0.03 0.84 16 16 N -0.47 -5.05 2.75 -119.97 -0.33 -5.38 16 17 C 0.15 1.71 12.74 -89.95 -1.15 0.57 16 18 N -0.30 -4.54 12.21 29.69 0.36 -4.18 16 19 N -0.30 -4.64 12.21 29.69 0.36 -4.28 16 20 C 0.16 1.89 12.74 -89.95 -1.15 0.74 16 21 C -0.02 -0.37 4.52 -104.63 -0.47 -0.85 16 22 C -0.10 -2.19 8.21 -39.59 -0.33 -2.51 16 23 C -0.14 -2.86 10.05 -39.58 -0.40 -3.26 16 24 C -0.14 -2.76 10.05 -39.58 -0.40 -3.15 16 25 C -0.15 -2.98 10.05 -39.58 -0.40 -3.38 16 26 C -0.06 -1.44 8.20 -39.58 -0.32 -1.77 16 27 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 28 H 0.40 5.49 8.36 -40.82 -0.34 5.15 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.22 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.22 1.89 8.06 -52.49 -0.42 1.47 16 35 H 0.11 2.27 7.01 -52.49 -0.37 1.90 16 36 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.10 1.81 8.06 -52.49 -0.42 1.38 16 39 H 0.13 2.93 6.02 -52.49 -0.32 2.62 16 LS Contribution 335.05 15.07 5.05 5.05 Total: -1.00 -32.10 335.05 -9.32 -41.41 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -4.80 Total: 9.89 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -5.29 Total: -9.20 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.67 Total: -47.22 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.08 Total: -13.41 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.02 Total: 13.47 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.10 -9.32 -41.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001640993402.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.918 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds