Wall clock time and date at job start Fri Apr 10 2020 20:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00153 * 2 1 4 4 H 1.48495 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46977 * 299.99883 * 3 2 1 6 6 H 1.48496 * 109.47065 * 59.99599 * 3 2 1 7 7 C 1.37879 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99762 * 181.96894 * 7 2 1 9 9 C 1.50696 * 119.99977 * 1.97120 * 7 2 1 10 10 H 1.09001 * 109.46910 * 175.33757 * 9 7 2 11 11 C 1.50695 * 109.47530 * 55.33425 * 9 7 2 12 12 O 1.21283 * 120.00501 * 240.00352 * 11 9 7 13 13 N 1.34779 * 120.00080 * 59.99483 * 11 9 7 14 14 C 1.46503 * 120.00328 * 180.02562 * 13 11 9 15 15 C 1.53000 * 109.46980 * 180.02562 * 14 13 11 16 16 N 1.46499 * 109.46647 * 179.97438 * 15 14 13 17 17 C 1.35493 * 126.98432 * 269.68360 * 16 15 14 18 18 N 1.30518 * 107.31042 * 179.84060 * 17 16 15 19 19 N 1.28597 * 109.67127 * 0.43956 * 18 17 16 20 20 C 1.30524 * 109.67081 * 359.72275 * 19 18 17 21 21 C 1.50707 * 109.47387 * 295.33233 * 9 7 2 22 22 C 1.38224 * 120.00104 * 167.22650 * 21 9 7 23 23 C 1.38237 * 120.00255 * 180.02562 * 22 21 9 24 24 C 1.38238 * 119.99745 * 359.95072 * 23 22 21 25 25 C 1.38236 * 119.99912 * 0.02562 * 24 23 22 26 26 C 1.38232 * 119.99717 * 347.20513 * 21 9 7 27 27 H 0.97003 * 120.00319 * 0.02562 * 1 2 3 28 28 H 0.97004 * 119.99602 * 0.02562 * 13 11 9 29 29 H 1.09000 * 109.46951 * 300.00008 * 14 13 11 30 30 H 1.09001 * 109.46665 * 60.00067 * 14 13 11 31 31 H 1.08997 * 109.47375 * 300.00159 * 15 14 13 32 32 H 1.09001 * 109.47013 * 60.00479 * 15 14 13 33 33 H 1.08000 * 126.34375 * 359.97438 * 17 16 15 34 34 H 1.07998 * 126.34350 * 179.97438 * 20 19 18 35 35 H 1.08000 * 120.00315 * 359.97438 * 22 21 9 36 36 H 1.07994 * 120.00683 * 179.97438 * 23 22 21 37 37 H 1.08001 * 120.00281 * 179.72897 * 24 23 22 38 38 H 1.07996 * 120.00326 * 179.97438 * 25 24 23 39 39 H 1.08001 * 120.00068 * 359.97438 * 26 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0840 -1.1944 0.0327 9 6 1.2516 -2.4988 -0.0438 10 1 1.9594 -3.3242 -0.1201 11 6 0.3358 -2.5100 -1.2405 12 8 -0.8613 -2.6297 -1.0870 13 7 0.8470 -2.3867 -2.4814 14 6 -0.0433 -2.3970 -3.6449 15 6 0.7848 -2.2430 -4.9221 16 7 -0.1055 -2.2540 -6.0855 17 6 -0.4973 -3.3352 -6.8020 18 7 -1.2890 -2.9083 -7.7477 19 7 -1.4064 -1.6301 -7.6698 20 6 -0.6996 -1.1842 -6.6672 21 6 0.4360 -2.6512 1.2143 22 6 -0.5369 -3.6298 1.2930 23 6 -1.2854 -3.7693 2.4468 24 6 -1.0601 -2.9306 3.5224 25 6 -0.0867 -1.9523 3.4439 26 6 0.6614 -1.8125 2.2898 27 1 -0.4851 0.8400 -0.0004 28 1 1.8045 -2.2911 -2.6042 29 1 -0.5881 -3.3405 -3.6770 30 1 -0.7507 -1.5713 -3.5682 31 1 1.3300 -1.2998 -4.8902 32 1 1.4919 -3.0691 -4.9985 33 1 -0.2096 -4.3606 -6.6223 34 1 -0.6055 -0.1535 -6.3587 35 1 -0.7130 -4.2850 0.4527 36 1 -2.0459 -4.5336 2.5081 37 1 -1.6478 -3.0367 4.4222 38 1 0.0891 -1.2968 4.2840 39 1 1.4221 -1.0484 2.2287 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001640993402.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:50 Heat of formation + Delta-G solvation = 55.758823 kcal Electronic energy + Delta-G solvation = -23774.333980 eV Core-core repulsion = 20296.859561 eV Total energy + Delta-G solvation = -3477.474420 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.06079 -40.73151 -39.18694 -37.06106 -35.47638 -34.72364 -32.64152 -31.56975 -31.34692 -30.39941 -28.72618 -25.94206 -24.73618 -23.28226 -22.97009 -22.74172 -22.19059 -21.02254 -18.82801 -18.16666 -17.72756 -17.02746 -17.01240 -16.64904 -16.34345 -16.27735 -15.87338 -15.55658 -15.32605 -15.25933 -14.74275 -14.23906 -13.95102 -13.82236 -13.65233 -13.48462 -13.01302 -12.79733 -12.64961 -12.57740 -12.45555 -12.26154 -11.75600 -11.41794 -11.38672 -11.27315 -11.13975 -10.64756 -10.45643 -10.19765 -9.74905 -9.37714 -9.09485 -8.06048 -6.25980 0.85178 0.89286 0.93818 1.41376 1.48422 1.50222 1.56801 1.89496 2.32175 2.46886 2.81109 3.21754 3.36135 3.59980 3.68986 3.75667 3.86921 4.26015 4.34060 4.35981 4.38228 4.43321 4.50779 4.63060 4.72011 4.89654 4.93212 5.01959 5.10597 5.17916 5.19335 5.46229 5.55227 5.71943 5.82191 5.89985 5.93624 5.96341 5.99422 6.43123 6.54042 6.77715 7.06111 7.44005 7.70571 7.91105 8.92722 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.016004 B = 0.004253 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.102579 B = 6582.345926 C = 7806.277830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.041 3.959 3 Si 0.938 3.062 4 H -0.256 1.256 5 H -0.287 1.287 6 H -0.295 1.295 7 C -0.529 4.529 8 H 0.076 0.924 9 C 0.047 3.953 10 H 0.075 0.925 11 C 0.550 3.450 12 O -0.584 6.584 13 N -0.722 5.722 14 C 0.120 3.880 15 C 0.110 3.890 16 N -0.469 5.469 17 C 0.165 3.835 18 N -0.350 5.350 19 N -0.348 5.348 20 C 0.159 3.841 21 C -0.036 4.036 22 C -0.118 4.118 23 C -0.148 4.148 24 C -0.143 4.143 25 C -0.154 4.154 26 C -0.087 4.087 27 H 0.254 0.746 28 H 0.412 0.588 29 H 0.056 0.944 30 H 0.032 0.968 31 H 0.124 0.876 32 H 0.142 0.858 33 H 0.256 0.744 34 H 0.243 0.757 35 H 0.101 0.899 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.124 0.876 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.558 -5.081 -3.815 9.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.180 1.180 5 H -0.214 1.214 6 H -0.221 1.221 7 C -0.567 4.567 8 H 0.094 0.906 9 C 0.026 3.974 10 H 0.093 0.907 11 C 0.339 3.661 12 O -0.463 6.463 13 N -0.376 5.376 14 C -0.006 4.006 15 C -0.012 4.012 16 N -0.159 5.159 17 C -0.123 4.123 18 N -0.189 5.189 19 N -0.186 5.186 20 C -0.131 4.131 21 C -0.037 4.037 22 C -0.136 4.136 23 C -0.166 4.166 24 C -0.161 4.161 25 C -0.172 4.172 26 C -0.105 4.105 27 H 0.064 0.936 28 H 0.249 0.751 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.142 0.858 32 H 0.160 0.840 33 H 0.272 0.728 34 H 0.259 0.741 35 H 0.119 0.881 36 H 0.146 0.854 37 H 0.153 0.847 38 H 0.142 0.858 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.615 -5.060 -4.921 8.433 hybrid contribution 1.041 1.443 1.103 2.094 sum 5.657 -3.616 -3.818 7.723 Atomic orbital electron populations 1.70250 1.06929 1.26613 1.47272 1.25556 0.94961 1.01586 0.94193 0.85804 0.79960 0.80776 0.76954 1.18003 1.21367 1.22127 1.20947 0.93251 0.88850 1.53664 0.90576 1.18022 0.93068 0.98600 0.87740 0.90674 1.21057 0.88540 0.71751 0.84723 1.90539 1.18341 1.51186 1.86277 1.45422 1.10874 1.76873 1.04435 1.21249 0.93235 1.00873 0.85202 1.22182 0.90745 1.08643 0.79656 1.46496 1.37239 1.07291 1.24858 1.27274 0.97339 0.96669 0.91052 1.74142 1.18397 1.04047 1.22268 1.74159 1.21443 1.03940 1.19107 1.27104 0.95596 0.97027 0.93335 1.19968 0.95460 0.92924 0.95355 1.21046 0.96646 0.99104 0.96826 1.21200 1.00538 1.00964 0.93940 1.21171 0.99088 0.96662 0.99164 1.21318 0.97913 0.99549 0.98375 1.21146 0.99313 0.97443 0.92614 0.93642 0.75126 0.92596 0.94933 0.85828 0.84008 0.72810 0.74142 0.88112 0.85450 0.84667 0.85762 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.68 10.89 21.45 0.23 -45.45 16 2 C 0.04 1.92 3.99 84.65 0.34 2.26 16 3 Si 0.94 37.57 29.54 68.60 2.03 39.59 16 4 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 5 H -0.29 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 7 C -0.53 -23.17 7.12 25.60 0.18 -22.99 16 8 H 0.08 3.16 7.81 -2.91 -0.02 3.14 16 9 C 0.05 2.00 2.78 -13.03 -0.04 1.97 16 10 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 11 C 0.55 23.34 5.45 87.66 0.48 23.82 16 12 O -0.58 -29.63 13.95 -3.04 -0.04 -29.68 16 13 N -0.72 -22.53 5.46 -463.05 -2.53 -25.06 16 14 C 0.12 3.17 6.00 86.38 0.52 3.69 16 15 C 0.11 1.65 6.31 86.38 0.55 2.19 16 16 N -0.47 -9.03 2.75 -533.49 -1.47 -10.50 16 17 C 0.17 3.39 12.74 180.11 2.30 5.68 16 18 N -0.35 -10.33 12.21 -59.99 -0.73 -11.06 16 19 N -0.35 -10.62 12.21 -59.99 -0.73 -11.35 16 20 C 0.16 3.64 12.74 180.11 2.30 5.93 16 21 C -0.04 -1.64 4.52 -19.87 -0.09 -1.73 16 22 C -0.12 -5.12 8.21 22.27 0.18 -4.94 16 23 C -0.15 -5.69 10.05 22.27 0.22 -5.47 16 24 C -0.14 -5.19 10.05 22.27 0.22 -4.97 16 25 C -0.15 -6.03 10.05 22.27 0.22 -5.81 16 26 C -0.09 -3.89 8.20 22.27 0.18 -3.71 16 27 H 0.25 13.34 8.31 -92.71 -0.77 12.57 16 28 H 0.41 10.35 8.36 -92.70 -0.77 9.58 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.03 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.26 2.75 8.06 -2.91 -0.02 2.73 16 34 H 0.24 3.88 8.06 -2.91 -0.02 3.85 16 35 H 0.10 4.37 7.01 -2.91 -0.02 4.35 16 36 H 0.13 4.11 8.06 -2.91 -0.02 4.08 16 37 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 38 H 0.12 4.19 8.06 -2.91 -0.02 4.16 16 39 H 0.11 5.26 6.02 -2.91 -0.02 5.24 16 Total: -1.00 -71.94 335.05 4.62 -67.32 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: 0.30 Total: 30.24 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 7.56 Total: -4.06 kcal Atomic # 7 Polarization: -98.19 SS G_CDS: -5.22 Total: -103.41 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -0.04 Total: -29.68 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.59 kcal Total: -71.94 4.62 -67.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001640993402.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.074 kcal (2) G-P(sol) polarization free energy of solvation -71.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds