Wall clock time and date at job start Fri Apr 10 2020 20:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86801 * 120.00096 * 2 1 4 4 H 1.48499 * 109.47231 * 239.99982 * 3 2 1 5 5 H 1.48500 * 109.47174 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46985 * 119.99766 * 3 2 1 7 7 C 1.38652 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00655 * 179.97438 * 7 2 1 9 9 O 1.34834 * 120.00189 * 0.02562 * 7 2 1 10 10 C 1.35746 * 117.00340 * 185.05311 * 9 7 2 11 11 C 1.38882 * 120.07145 * 174.73672 * 10 9 7 12 12 C 1.38099 * 119.93206 * 180.25590 * 11 10 9 13 13 C 1.38295 * 120.06865 * 359.47410 * 12 11 10 14 14 C 1.50702 * 119.93331 * 180.29799 * 13 12 11 15 15 N 1.46500 * 109.46789 * 89.99748 * 14 13 12 16 16 C 1.39003 * 119.99615 * 180.02562 * 15 14 13 17 17 N 1.32684 * 120.09449 * 0.02562 * 16 15 14 18 18 C 1.32222 * 119.90949 * 179.97438 * 17 16 15 19 19 C 1.38199 * 120.11134 * 359.97438 * 18 17 16 20 20 N 1.32245 * 120.18366 * 0.02562 * 19 18 17 21 21 C 1.31948 * 120.09017 * 359.72650 * 20 19 18 22 22 C 1.50703 * 120.05623 * 180.27858 * 21 20 19 23 23 N 1.46908 * 109.46932 * 270.24518 * 22 21 20 24 24 C 1.38308 * 120.13808 * 0.27516 * 13 12 11 25 25 C 1.38100 * 120.06790 * 359.97438 * 24 13 12 26 26 H 0.97006 * 120.00187 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.03090 * 0.02562 * 11 10 9 28 28 H 1.08000 * 119.96243 * 179.74600 * 12 11 10 29 29 H 1.08992 * 109.47246 * 209.99819 * 14 13 12 30 30 H 1.08999 * 109.46761 * 330.00230 * 14 13 12 31 31 H 0.96994 * 120.00364 * 0.02562 * 15 14 13 32 32 H 1.07998 * 119.94273 * 179.97438 * 18 17 16 33 33 H 1.07994 * 119.91181 * 179.97438 * 19 18 17 34 34 H 1.08993 * 109.47012 * 30.24598 * 22 21 20 35 35 H 1.09000 * 109.46886 * 150.25015 * 22 21 20 36 36 H 1.00898 * 110.99573 * 179.97438 * 23 22 21 37 37 H 1.00896 * 111.00102 * 303.96092 * 23 22 21 38 38 H 1.07997 * 119.96346 * 180.02562 * 24 13 12 39 39 H 1.07996 * 120.03027 * 180.02562 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1033 1.6964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0699 -3.5047 0.1045 11 6 1.4364 -4.7352 0.2200 12 6 2.1872 -5.8888 0.3330 13 6 3.5684 -5.8206 0.3203 14 6 4.3847 -7.0820 0.4372 15 7 4.6429 -7.6220 -0.9000 16 6 5.3816 -8.7904 -1.0469 17 7 5.8531 -9.4183 0.0227 18 6 6.5548 -10.5297 -0.1213 19 6 6.7972 -11.0381 -1.3833 20 7 6.3291 -10.4155 -2.4520 21 6 5.6238 -9.3086 -2.3170 22 6 5.0854 -8.6033 -3.5351 23 7 6.0747 -7.6283 -4.0135 24 6 4.2022 -4.5972 0.2002 25 6 3.4571 -3.4396 0.0920 26 1 -0.4851 0.8401 -0.0004 27 1 0.3578 -4.7895 0.2251 28 1 1.6951 -6.8456 0.4270 29 1 5.3318 -6.8578 0.9276 30 1 3.8356 -7.8168 1.0259 31 1 4.2986 -7.1644 -1.6827 32 1 6.9392 -11.0409 0.7489 33 1 7.3710 -11.9458 -1.4971 34 1 4.8862 -9.3335 -4.3193 35 1 4.1613 -8.0862 -3.2767 36 1 5.7372 -7.1420 -4.8306 37 1 6.3247 -6.9786 -3.2831 38 1 5.2810 -4.5473 0.1902 39 1 3.9526 -2.4846 -0.0022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650720871.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:02 Heat of formation + Delta-G solvation = 52.467595 kcal Electronic energy + Delta-G solvation = -22779.906279 eV Core-core repulsion = 19302.289140 eV Total energy + Delta-G solvation = -3477.617138 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.16274 -39.25101 -37.31671 -35.91996 -35.39331 -33.19809 -32.43499 -31.03711 -30.33810 -29.00916 -26.32574 -25.92852 -24.92411 -22.92161 -22.40017 -22.12382 -20.68860 -18.37085 -18.11670 -17.46780 -17.05345 -16.69109 -15.76098 -15.23910 -15.01632 -14.86354 -14.63295 -14.35742 -14.29575 -14.14518 -13.70441 -13.60728 -13.20050 -12.85834 -12.78450 -12.38475 -12.32685 -11.79278 -11.50086 -11.43333 -11.24519 -10.97429 -10.84386 -10.76389 -10.54683 -10.25091 -9.48814 -9.13332 -8.98311 -8.93825 -8.36452 -7.87508 -7.40276 -6.58127 -4.17359 0.84921 1.27478 1.97451 2.05757 3.04089 3.05749 3.09520 3.17766 3.67652 3.85941 4.04583 4.24789 4.34782 4.48306 4.57654 4.93449 4.96461 5.02638 5.10027 5.14794 5.20522 5.33333 5.35895 5.57343 5.59842 5.73753 5.81881 6.05242 6.17634 6.27998 6.52476 6.72967 6.78426 6.87014 6.91050 7.00067 7.09279 7.16261 7.20163 7.28742 7.60920 7.64591 7.86135 7.93997 8.86915 9.54152 10.59143 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.026615 B = 0.002735 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.777536 B =10235.480010 C =10587.326966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.395 4.395 8 H 0.093 0.907 9 O -0.172 6.172 10 C 0.161 3.839 11 C -0.196 4.196 12 C -0.054 4.054 13 C -0.219 4.219 14 C 0.189 3.811 15 N -0.704 5.704 16 C 0.366 3.634 17 N -0.503 5.503 18 C 0.104 3.896 19 C -0.033 4.033 20 N -0.388 5.388 21 C 0.018 3.982 22 C 0.122 3.878 23 N -0.841 5.841 24 C -0.050 4.050 25 C -0.237 4.237 26 H 0.273 0.727 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.408 0.592 32 H 0.166 0.834 33 H 0.162 0.838 34 H 0.092 0.908 35 H 0.042 0.958 36 H 0.348 0.652 37 H 0.341 0.659 38 H 0.108 0.892 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.250 -15.535 -2.489 18.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.471 4.471 8 H 0.111 0.889 9 O -0.074 6.074 10 C 0.106 3.894 11 C -0.215 4.215 12 C -0.072 4.072 13 C -0.220 4.220 14 C 0.067 3.933 15 N -0.338 5.338 16 C 0.125 3.875 17 N -0.226 5.226 18 C -0.057 4.057 19 C -0.193 4.193 20 N -0.102 5.102 21 C -0.133 4.133 22 C -0.010 4.010 23 N -0.373 5.373 24 C -0.069 4.069 25 C -0.257 4.257 26 H 0.083 0.917 27 H 0.136 0.864 28 H 0.130 0.870 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.246 0.754 32 H 0.183 0.817 33 H 0.179 0.821 34 H 0.111 0.889 35 H 0.059 0.941 36 H 0.162 0.838 37 H 0.154 0.846 38 H 0.126 0.874 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.222 -15.850 -2.418 19.015 hybrid contribution -0.317 1.670 0.087 1.702 sum 9.905 -14.180 -2.331 17.454 Atomic orbital electron populations 1.70022 1.06034 1.28080 1.45101 1.25323 0.95865 0.98964 0.96239 0.85761 0.78748 0.79551 0.79300 1.19393 1.20152 1.19377 1.21316 0.91851 0.80702 1.53231 0.88946 1.83977 1.34530 1.11566 1.77331 1.19438 0.90319 0.88047 0.91579 1.20218 0.99694 0.90274 1.11323 1.20531 0.92784 0.96815 0.97118 1.19221 0.93569 0.93541 1.15689 1.19962 0.98371 0.92344 0.82640 1.45175 1.55411 1.23147 1.10017 1.19306 0.89929 0.88125 0.90108 1.68057 1.13648 1.09899 1.31004 1.23466 0.92674 0.91013 0.98564 1.23258 1.04486 1.02498 0.89083 1.67976 1.03727 1.05350 1.33122 1.21355 1.02850 0.96023 0.93101 1.20381 0.91897 0.94795 0.93934 1.58631 1.45134 1.22353 1.11133 1.20643 0.98344 0.91671 0.96204 1.21159 0.93774 0.98963 1.11785 0.91749 0.86361 0.87029 0.91697 0.91716 0.75353 0.81736 0.82062 0.88941 0.94052 0.83829 0.84627 0.87436 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.38 13.67 55.48 0.76 -23.62 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 19.75 29.55 -169.99 -5.02 14.73 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.40 -10.59 9.49 30.89 0.29 -10.30 16 8 H 0.09 2.27 5.20 -52.48 -0.27 2.00 16 9 O -0.17 -4.69 9.76 0.05 0.00 -4.69 16 10 C 0.16 3.66 6.65 -39.11 -0.26 3.40 16 11 C -0.20 -3.86 9.99 -39.39 -0.39 -4.25 16 12 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 13 C -0.22 -3.36 5.25 -104.57 -0.55 -3.91 16 14 C 0.19 2.49 5.84 -5.19 -0.03 2.46 16 15 N -0.70 -8.47 5.60 -61.49 -0.34 -8.82 16 16 C 0.37 4.63 7.46 -154.72 -1.15 3.47 16 17 N -0.50 -6.38 9.73 -12.24 -0.12 -6.50 16 18 C 0.10 1.04 11.22 -17.40 -0.20 0.85 16 19 C -0.03 -0.33 11.21 -17.39 -0.19 -0.53 16 20 N -0.39 -4.87 10.41 -9.12 -0.09 -4.96 16 21 C 0.02 0.22 6.32 -82.15 -0.52 -0.30 16 22 C 0.12 1.24 6.65 -4.97 -0.03 1.20 16 23 N -0.84 -8.15 9.61 -11.40 -0.11 -8.26 16 24 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 25 C -0.24 -4.79 9.17 -39.40 -0.36 -5.15 16 26 H 0.27 7.10 8.31 -40.82 -0.34 6.77 16 27 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 28 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 29 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 30 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 31 H 0.41 4.62 6.46 -40.82 -0.26 4.35 16 32 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.04 0.38 6.56 -51.93 -0.34 0.04 16 36 H 0.35 2.67 9.08 -39.29 -0.36 2.32 16 37 H 0.34 3.33 8.98 -39.29 -0.35 2.98 16 38 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 39 H 0.13 2.60 5.64 -52.49 -0.30 2.30 16 LS Contribution 338.63 15.07 5.10 5.10 Total: -1.00 -30.85 338.63 -8.49 -39.34 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -4.39 Total: 12.20 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -4.26 Total: -14.53 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 0.09 Total: -52.16 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: 0.00 Total: -4.69 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.85 -8.49 -39.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650720871.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.807 kcal (2) G-P(sol) polarization free energy of solvation -30.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds