Wall clock time and date at job start Fri Apr 10 2020 20:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42099 * 108.57770 * 2 1 4 4 O 1.42093 * 108.58136 * 228.97126 * 2 1 3 5 5 C 1.81404 * 101.92151 * 114.48303 * 2 1 3 6 6 C 1.53000 * 109.46946 * 180.02562 * 5 2 1 7 7 H 1.09001 * 110.28614 * 305.70072 * 6 5 2 8 8 C 1.54256 * 110.32724 * 67.83092 * 6 5 2 9 9 C 1.54377 * 105.06250 * 118.89428 * 8 6 5 10 10 N 1.48560 * 104.59471 * 23.85300 * 9 8 6 11 11 C 1.46897 * 110.99649 * 200.96007 * 10 9 8 12 12 C 1.52998 * 109.47148 * 290.12184 * 11 10 9 13 13 H 1.08994 * 109.47659 * 305.00392 * 12 11 10 14 14 C 1.47200 * 109.46745 * 65.00682 * 12 11 10 15 15 N 7.39678 * 129.85372 * 66.77744 * 2 1 3 16 16 C 1.53009 * 109.47096 * 185.00303 * 12 11 10 17 17 C 1.50697 * 109.47077 * 175.00291 * 16 12 11 18 18 H 1.08004 * 120.00042 * 0.02562 * 17 16 12 19 19 C 1.37871 * 120.00218 * 179.97438 * 17 16 12 20 20 N 1.31519 * 119.99714 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00514 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46803 * 90.00002 * 21 19 17 23 23 H 1.48491 * 109.47538 * 210.00094 * 21 19 17 24 24 H 1.48501 * 109.47228 * 330.00413 * 21 19 17 25 25 C 1.48727 * 104.28647 * 320.57179 * 10 9 8 26 26 H 1.09008 * 109.47605 * 305.51590 * 1 2 3 27 27 H 1.08997 * 109.47133 * 65.51743 * 1 2 3 28 28 H 1.09005 * 109.47147 * 185.51549 * 1 2 3 29 29 H 1.09002 * 109.47124 * 60.00027 * 5 2 1 30 30 H 1.09001 * 109.46975 * 300.00148 * 5 2 1 31 31 H 1.09001 * 110.32150 * 237.79412 * 8 6 5 32 32 H 1.09004 * 110.32394 * 359.97438 * 8 6 5 33 33 H 1.09004 * 110.40929 * 142.63397 * 9 8 6 34 34 H 1.08999 * 110.41012 * 265.06995 * 9 8 6 35 35 H 1.08996 * 109.47287 * 50.13171 * 11 10 9 36 36 H 1.09010 * 109.46731 * 170.12903 * 11 10 9 37 37 H 1.08998 * 109.46731 * 295.00545 * 16 12 11 38 38 H 1.08996 * 109.47153 * 55.00338 * 16 12 11 39 39 H 0.97003 * 120.00025 * 179.97438 * 20 19 17 40 40 H 1.08997 * 110.39067 * 280.64126 * 25 10 9 41 41 H 1.09000 * 110.50309 * 158.14372 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2666 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0160 5 6 2.1887 -0.7356 1.6153 6 6 3.7054 -0.8183 1.7985 7 1 4.1588 -1.3491 0.9614 8 6 4.3077 0.5961 1.9255 9 6 4.9627 0.6293 3.3230 10 7 5.2387 -0.7954 3.6410 11 6 5.3935 -0.9912 5.0886 12 6 6.6983 -0.3420 5.5544 13 1 7.5296 -0.7377 4.9709 14 6 6.6159 1.1154 5.3652 15 7 6.5540 2.2390 5.2183 16 6 6.9218 -0.6522 7.0359 17 6 8.2644 -0.1181 7.4639 18 1 8.8950 0.3919 6.7507 19 6 8.6873 -0.2797 8.7662 20 7 7.9188 -0.8995 9.6350 21 14 10.3518 0.3817 9.2967 22 1 10.1983 1.7769 9.7816 23 1 10.8958 -0.4649 10.3886 24 1 11.2846 0.3590 8.1413 25 6 4.0471 -1.5233 3.1288 26 1 -0.3634 0.5970 0.8365 27 1 -0.3633 0.4259 -0.9352 28 1 -0.3634 -1.0229 0.0988 29 1 1.7610 -1.7369 1.6666 30 1 1.7609 -0.1169 2.4043 31 1 5.0580 0.7590 1.1518 32 1 3.5229 1.3494 1.8569 33 1 5.8914 1.1992 3.2942 34 1 4.2764 1.0560 4.0545 35 1 4.5531 -0.5323 5.6093 36 1 5.4194 -2.0583 5.3102 37 1 6.1376 -0.1808 7.6281 38 1 6.8942 -1.7310 7.1894 39 1 8.2164 -1.0135 10.5512 40 1 3.2174 -1.4345 3.8301 41 1 4.2868 -2.5719 2.9526 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654554503.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:06 Heat of formation + Delta-G solvation = -42.997267 kcal Electronic energy + Delta-G solvation = -22242.536289 eV Core-core repulsion = 18863.930684 eV Total energy + Delta-G solvation = -3378.605605 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 300.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.48160 -37.31700 -36.66220 -36.30171 -34.27624 -33.24267 -31.49431 -30.17007 -29.48478 -27.45140 -25.66149 -23.45482 -21.88522 -21.08542 -20.34608 -19.19188 -17.11762 -17.00640 -16.57803 -16.50857 -16.25709 -15.86276 -15.22715 -14.58417 -14.33726 -13.89927 -13.77775 -13.64955 -13.50433 -13.14048 -12.93950 -12.70440 -12.53151 -12.40799 -12.32220 -12.11746 -12.08089 -11.84003 -11.44098 -11.34003 -11.27839 -10.99707 -10.82195 -10.76288 -10.69460 -10.54766 -10.44060 -10.25075 -9.54531 -9.24283 -8.46985 -8.43952 -6.10864 -4.13856 -0.41524 2.35884 3.22522 3.29524 3.36058 3.39819 3.58006 3.60147 3.64275 3.90180 4.19238 4.32419 4.34205 4.41576 4.45332 4.49901 4.79570 4.82148 5.07582 5.10923 5.17481 5.25693 5.27381 5.38849 5.51547 5.58615 5.65689 5.76858 5.97027 5.99441 6.04769 6.14385 6.32695 6.52489 6.83425 7.07621 7.41306 7.50925 7.84451 8.21936 8.40736 8.90720 9.51764 11.00072 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.042142 B = 0.002709 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.258705 B =10333.809689 C =10611.350329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.660 4.660 2 S 2.418 3.582 3 O -0.933 6.933 4 O -0.939 6.939 5 C -0.604 4.604 6 C -0.081 4.081 7 H 0.097 0.903 8 C -0.142 4.142 9 C 0.026 3.974 10 N -0.511 5.511 11 C 0.052 3.948 12 C 0.008 3.992 13 H 0.111 0.889 14 C 0.247 3.753 15 N -0.478 5.478 16 C 0.033 3.967 17 C -0.526 4.526 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.892 5.892 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.285 1.285 24 H -0.272 1.272 25 C 0.045 3.955 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.045 0.955 35 H 0.042 0.958 36 H 0.095 0.905 37 H 0.023 0.977 38 H 0.039 0.961 39 H 0.262 0.738 40 H 0.049 0.951 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.120 -3.917 -16.964 24.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.600 3.400 3 O -0.930 6.930 4 O -0.936 6.936 5 C -0.733 4.733 6 C -0.101 4.101 7 H 0.115 0.885 8 C -0.180 4.180 9 C -0.102 4.102 10 N -0.234 5.234 11 C -0.077 4.077 12 C -0.014 4.014 13 H 0.129 0.871 14 C -0.069 4.069 15 N -0.155 5.155 16 C -0.006 4.006 17 C -0.564 4.564 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.197 1.197 25 C -0.084 4.084 26 H 0.147 0.853 27 H 0.147 0.853 28 H 0.146 0.854 29 H 0.153 0.847 30 H 0.151 0.849 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.113 0.887 37 H 0.042 0.958 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.158 -2.167 -17.903 24.214 hybrid contribution -0.493 -0.080 1.660 1.734 sum -16.651 -2.247 -16.243 23.369 Atomic orbital electron populations 1.30313 1.27290 1.11495 1.11793 1.07942 0.78095 0.76091 0.77840 1.93617 1.78625 1.34350 1.86396 1.93603 1.78908 1.67061 1.54059 1.30417 1.05865 1.14018 1.23008 1.21639 0.89385 0.98354 1.00765 0.88454 1.22767 1.01376 0.95384 0.98464 1.23383 1.00764 0.90663 0.95366 1.65510 1.36219 1.06861 1.14853 1.22425 0.96878 1.02077 0.86296 1.19299 0.97957 0.81315 1.02823 0.87117 1.29118 0.91880 0.95364 0.90544 1.80998 1.09959 1.13018 1.11559 1.19162 0.97742 0.98333 0.85347 1.21143 1.02367 1.37270 0.95600 0.92478 1.24953 0.97399 0.95002 0.96635 1.69939 1.36998 1.42049 1.04131 0.86583 0.84107 0.78894 0.78445 1.20686 1.21085 1.19689 1.23143 0.92393 0.99031 0.93865 0.85335 0.85308 0.85393 0.84665 0.84872 0.90029 0.89451 0.89164 0.93649 0.94007 0.88653 0.95818 0.94233 0.92803 0.93226 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.08 10.62 101.05 1.07 -1.01 16 2 S 2.42 16.45 5.26 -107.50 -0.57 15.88 16 3 O -0.93 -9.99 15.93 -57.83 -0.92 -10.91 16 4 O -0.94 -9.92 18.10 -57.83 -1.05 -10.97 16 5 C -0.60 -3.37 4.97 37.16 0.18 -3.18 16 6 C -0.08 -0.76 3.07 -89.24 -0.27 -1.03 16 7 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 8 C -0.14 -1.66 5.91 -25.35 -0.15 -1.81 16 9 C 0.03 0.37 4.72 -2.18 -0.01 0.36 16 10 N -0.51 -6.86 5.37 -229.83 -1.23 -8.09 16 11 C 0.05 0.76 4.49 -3.83 -0.02 0.75 16 12 C 0.01 0.15 2.42 -93.40 -0.23 -0.08 16 13 H 0.11 1.99 8.14 -51.93 -0.42 1.56 16 14 C 0.25 5.02 10.65 -20.80 -0.22 4.79 16 15 N -0.48 -10.36 17.69 42.11 0.74 -9.62 16 16 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 17 C -0.53 -13.98 8.60 -34.44 -0.30 -14.27 16 18 H 0.06 1.52 7.59 -52.48 -0.40 1.12 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -25.44 13.29 55.43 0.74 -24.71 16 21 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 C 0.04 0.45 6.05 -2.09 -0.01 0.44 16 26 H 0.13 0.21 8.14 -51.92 -0.42 -0.21 16 27 H 0.13 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.13 0.16 8.14 -51.92 -0.42 -0.26 16 29 H 0.14 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.13 0.54 8.14 -51.92 -0.42 0.12 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.09 0.97 6.10 -51.93 -0.32 0.66 16 33 H 0.09 1.47 5.80 -51.93 -0.30 1.17 16 34 H 0.05 0.67 7.72 -51.93 -0.40 0.26 16 35 H 0.04 0.61 7.88 -51.93 -0.41 0.20 16 36 H 0.10 1.25 8.13 -51.92 -0.42 0.83 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.05 0.45 7.72 -51.93 -0.40 0.05 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 346.66 15.07 5.22 5.22 Total: -1.00 -35.47 346.66 -8.69 -44.15 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -6.43 Total: -4.46 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -0.17 Total: -12.81 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.25 Total: -42.42 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -1.97 Total: -21.88 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 16.45 SS G_CDS: -0.57 Total: 15.88 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.47 -8.69 -44.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654554503.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.157 kcal (2) G-P(sol) polarization free energy of solvation -35.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds