Wall clock time and date at job start Fri Apr 10 2020 20:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42094 * 108.58085 * 2 1 4 4 O 1.42101 * 108.58014 * 228.97177 * 2 1 3 5 5 C 1.81398 * 101.91940 * 114.48784 * 2 1 3 6 6 C 1.52997 * 109.47352 * 179.97438 * 5 2 1 7 7 H 1.08995 * 110.87699 * 57.38898 * 6 5 2 8 8 C 1.55142 * 110.99098 * 293.54619 * 6 5 2 9 9 C 1.54319 * 103.02009 * 206.21611 * 8 6 5 10 10 N 1.47440 * 107.23476 * 22.28011 * 9 8 6 11 11 C 1.46908 * 110.99667 * 123.25549 * 10 9 8 12 12 C 1.52997 * 109.46699 * 69.88110 * 11 10 9 13 13 H 1.08998 * 109.47711 * 54.99907 * 12 11 10 14 14 C 1.47204 * 109.47142 * 294.99226 * 12 11 10 15 15 N 7.45120 * 143.12426 * 163.43078 * 2 1 3 16 16 C 1.53004 * 109.47070 * 175.00094 * 12 11 10 17 17 C 1.50701 * 109.47211 * 185.00010 * 16 12 11 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 16 12 19 19 C 1.37871 * 119.99694 * 180.27574 * 17 16 12 20 20 N 1.31523 * 119.99908 * 179.72112 * 19 17 16 21 21 Si 1.86800 * 120.00405 * 359.71709 * 19 17 16 22 22 H 1.48500 * 109.47210 * 90.00069 * 21 19 17 23 23 H 1.48504 * 109.47424 * 210.00300 * 21 19 17 24 24 H 1.48502 * 109.46888 * 330.00390 * 21 19 17 25 25 C 1.47848 * 108.56484 * 0.99420 * 10 9 8 26 26 H 1.08996 * 109.46902 * 305.51482 * 1 2 3 27 27 H 1.09003 * 109.46720 * 65.51455 * 1 2 3 28 28 H 1.09004 * 109.46999 * 185.51012 * 1 2 3 29 29 H 1.08999 * 109.47299 * 59.99920 * 5 2 1 30 30 H 1.09007 * 109.47246 * 300.00000 * 5 2 1 31 31 H 1.09005 * 110.70802 * 87.83507 * 8 6 5 32 32 H 1.09003 * 110.70551 * 324.59977 * 8 6 5 33 33 H 1.09002 * 109.88664 * 262.87574 * 9 8 6 34 34 H 1.09001 * 109.88785 * 141.68962 * 9 8 6 35 35 H 1.08999 * 109.47398 * 309.87649 * 11 10 9 36 36 H 1.09000 * 109.46928 * 189.87750 * 11 10 9 37 37 H 1.09000 * 109.47211 * 64.99037 * 16 12 11 38 38 H 1.09007 * 109.46376 * 304.99579 * 16 12 11 39 39 H 0.96995 * 120.00181 * 179.97438 * 20 19 17 40 40 H 1.08999 * 110.37475 * 94.73192 * 25 10 9 41 41 H 1.09004 * 110.37091 * 217.07358 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7357 1.6152 6 6 3.7054 -0.8196 1.7980 7 1 4.1629 0.1652 1.7047 8 6 4.3318 -1.8209 0.7920 9 6 5.6152 -2.2822 1.5142 10 7 5.4174 -2.0387 2.9548 11 6 5.5895 -3.2769 3.7264 12 6 7.0635 -3.6866 3.7110 13 1 7.6744 -2.8599 4.0738 14 6 7.4641 -4.0260 2.3357 15 7 7.7745 -4.2857 1.2751 16 6 7.2640 -4.9041 4.6156 17 6 8.7324 -5.2327 4.6977 18 1 9.4508 -4.6334 4.1582 19 6 9.1581 -6.3023 5.4565 20 7 10.4391 -6.5924 5.5237 21 14 7.9154 -7.3393 6.3892 22 1 7.4539 -8.4552 5.5250 23 1 8.5502 -7.8909 7.6131 24 1 6.7542 -6.4960 6.7709 25 6 4.0663 -1.4729 3.1554 26 1 -0.3633 0.5970 0.8365 27 1 -0.3633 0.4260 -0.9353 28 1 -0.3633 -1.0230 0.0987 29 1 1.7610 -1.7369 1.6665 30 1 1.7609 -0.1171 2.4043 31 1 4.5755 -1.3228 -0.1464 32 1 3.6624 -2.6638 0.6198 33 1 6.4694 -1.7082 1.1549 34 1 5.7789 -3.3451 1.3367 35 1 4.9875 -4.0690 3.2814 36 1 5.2692 -3.1114 4.7551 37 1 6.7234 -5.7561 4.2033 38 1 6.8851 -4.6817 5.6132 39 1 10.7387 -7.3446 6.0578 40 1 3.3559 -2.2635 3.3969 41 1 4.0828 -0.7220 3.9454 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654554504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:09 Heat of formation + Delta-G solvation = -37.079744 kcal Electronic energy + Delta-G solvation = -22295.095228 eV Core-core repulsion = 18916.746225 eV Total energy + Delta-G solvation = -3378.349002 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 300.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.61035 -37.33366 -36.72273 -36.33118 -34.29823 -33.21619 -31.67534 -30.23572 -29.59461 -27.81048 -25.84243 -23.50323 -21.55862 -20.90833 -20.64162 -19.22387 -17.34489 -16.99282 -16.86220 -16.53095 -16.40797 -15.82029 -15.39704 -14.40804 -14.17945 -14.04412 -13.78424 -13.69038 -13.53663 -13.31739 -13.05862 -12.70434 -12.65873 -12.53262 -12.39474 -12.32337 -12.19797 -11.90328 -11.61341 -11.42653 -11.39610 -11.20680 -10.93076 -10.88775 -10.65312 -10.60687 -10.30066 -9.98054 -9.74172 -9.33361 -8.62395 -8.33445 -6.11086 -4.11791 -0.44738 2.33036 3.20145 3.25448 3.32461 3.33585 3.54615 3.56516 3.59602 3.81977 4.11517 4.26192 4.29948 4.37137 4.41775 4.47049 4.70207 4.74362 4.99409 5.04243 5.13714 5.21864 5.23400 5.29909 5.42045 5.47644 5.59476 5.74984 5.85377 5.90516 5.94611 6.14781 6.17213 6.35220 6.89583 6.95076 7.02146 7.12902 7.62872 8.35292 8.42573 8.92826 9.48516 11.02091 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.035133 B = 0.002875 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.775565 B = 9735.868325 C =10054.904067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.660 4.660 2 S 2.419 3.581 3 O -0.939 6.939 4 O -0.932 6.932 5 C -0.600 4.600 6 C -0.090 4.090 7 H 0.103 0.897 8 C -0.151 4.151 9 C 0.030 3.970 10 N -0.528 5.528 11 C 0.055 3.945 12 C 0.018 3.982 13 H 0.117 0.883 14 C 0.245 3.755 15 N -0.470 5.470 16 C -0.004 4.004 17 C -0.527 4.527 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.897 5.897 21 Si 0.878 3.122 22 H -0.278 1.278 23 H -0.287 1.287 24 H -0.263 1.263 25 C 0.057 3.943 26 H 0.127 0.873 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.133 0.867 30 H 0.136 0.864 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.094 0.906 37 H 0.018 0.982 38 H 0.039 0.961 39 H 0.265 0.735 40 H 0.052 0.948 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.208 13.600 -5.089 28.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.600 3.400 3 O -0.936 6.936 4 O -0.929 6.929 5 C -0.729 4.729 6 C -0.110 4.110 7 H 0.121 0.879 8 C -0.190 4.190 9 C -0.098 4.098 10 N -0.252 5.252 11 C -0.074 4.074 12 C -0.004 4.004 13 H 0.134 0.866 14 C -0.071 4.071 15 N -0.147 5.147 16 C -0.043 4.043 17 C -0.565 4.565 18 H 0.092 0.908 19 C -0.132 4.132 20 N -0.535 5.535 21 Si 0.705 3.295 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.187 1.187 25 C -0.072 4.072 26 H 0.146 0.854 27 H 0.147 0.853 28 H 0.146 0.854 29 H 0.151 0.849 30 H 0.154 0.846 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.112 0.888 37 H 0.036 0.964 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -22.655 13.727 -7.092 27.423 hybrid contribution -1.826 -1.519 1.320 2.717 sum -24.482 12.208 -5.772 27.959 Atomic orbital electron populations 1.30311 1.27289 1.11515 1.11742 1.07948 0.78098 0.75955 0.77962 1.93608 1.78893 1.34540 1.86552 1.93628 1.78612 1.66796 1.53901 1.30301 1.05399 1.14061 1.23174 1.22062 0.89667 1.01495 0.97771 0.87923 1.23142 0.97956 0.99102 0.98772 1.23186 0.97570 1.01803 0.87222 1.63656 1.26659 1.27549 1.07352 1.22450 0.95883 0.89791 0.99286 1.19073 0.94757 1.01887 0.84705 0.86566 1.28944 0.92048 0.91843 0.94277 1.81041 1.09521 1.10386 1.13747 1.19638 0.98982 0.91329 0.94348 1.21029 0.90410 1.14602 1.30484 0.90751 1.24999 0.95085 0.96963 0.96113 1.69909 1.14124 1.28888 1.40564 0.86809 0.81942 0.80966 0.79746 1.20335 1.21246 1.18735 1.23027 0.89561 0.98517 0.96057 0.85405 0.85302 0.85366 0.84874 0.84600 0.89592 0.90460 0.90121 0.91134 0.94053 0.88811 0.96352 0.94332 0.92558 0.93014 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.82 10.62 101.05 1.07 -0.75 16 2 S 2.42 15.60 5.25 -107.50 -0.56 15.04 16 3 O -0.94 -9.76 18.10 -57.83 -1.05 -10.81 16 4 O -0.93 -9.72 16.44 -57.83 -0.95 -10.67 16 5 C -0.60 -2.95 5.31 37.16 0.20 -2.75 16 6 C -0.09 -0.79 3.06 -88.48 -0.27 -1.06 16 7 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 8 C -0.15 -1.71 5.13 -24.91 -0.13 -1.83 16 9 C 0.03 0.42 5.24 -2.84 -0.01 0.40 16 10 N -0.53 -6.76 5.16 -231.24 -1.19 -7.95 16 11 C 0.05 0.75 4.34 -3.82 -0.02 0.73 16 12 C 0.02 0.31 2.42 -93.40 -0.23 0.09 16 13 H 0.12 2.04 8.14 -51.93 -0.42 1.61 16 14 C 0.25 4.93 10.66 -20.78 -0.22 4.71 16 15 N -0.47 -10.25 17.69 42.12 0.75 -9.50 16 16 C 0.00 -0.08 3.49 -27.88 -0.10 -0.18 16 17 C -0.53 -14.18 9.15 -34.44 -0.32 -14.50 16 18 H 0.07 2.21 7.84 -52.49 -0.41 1.80 16 19 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 20 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 21 Si 0.88 20.51 27.46 -169.99 -4.67 15.84 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.26 -5.63 6.55 56.52 0.37 -5.26 16 25 C 0.06 0.54 6.15 -2.30 -0.01 0.52 16 26 H 0.13 0.11 8.14 -51.93 -0.42 -0.31 16 27 H 0.13 0.34 8.14 -51.92 -0.42 -0.09 16 28 H 0.13 0.15 8.14 -51.92 -0.42 -0.28 16 29 H 0.13 0.41 8.11 -51.92 -0.42 -0.01 16 30 H 0.14 0.28 8.14 -51.92 -0.42 -0.14 16 31 H 0.09 1.00 7.60 -51.93 -0.39 0.61 16 32 H 0.08 0.82 8.01 -51.93 -0.42 0.40 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.11 4.78 -51.93 -0.25 0.86 16 35 H 0.04 0.55 7.96 -51.93 -0.41 0.14 16 36 H 0.09 1.10 8.07 -51.93 -0.42 0.68 16 37 H 0.02 0.39 7.56 -51.93 -0.39 0.00 16 38 H 0.04 0.77 7.21 -51.93 -0.37 0.39 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.05 0.43 7.71 -51.93 -0.40 0.03 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 344.14 15.07 5.19 5.19 Total: -1.00 -36.88 344.14 -8.29 -45.17 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -6.44 Total: -3.25 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -0.13 Total: -12.73 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.33 Total: -43.76 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -2.00 Total: -21.48 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.67 Total: 15.84 kcal Atomic # 16 Polarization: 15.60 SS G_CDS: -0.56 Total: 15.04 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.88 -8.29 -45.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654554504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.087 kcal (2) G-P(sol) polarization free energy of solvation -36.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds