Wall clock time and date at job start Fri Apr 10 2020 20:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42094 * 108.58085 * 2 1 4 4 O 1.42101 * 108.58014 * 228.97177 * 2 1 3 5 5 C 1.81398 * 101.91940 * 114.48784 * 2 1 3 6 6 C 1.52997 * 109.47352 * 179.97438 * 5 2 1 7 7 H 1.08995 * 110.87699 * 57.38898 * 6 5 2 8 8 C 1.55142 * 110.99098 * 293.54619 * 6 5 2 9 9 C 1.54319 * 103.02009 * 206.21611 * 8 6 5 10 10 N 1.47440 * 107.23476 * 22.28011 * 9 8 6 11 11 C 1.46908 * 110.99667 * 123.25549 * 10 9 8 12 12 C 1.52997 * 109.46699 * 69.88110 * 11 10 9 13 13 H 1.08998 * 109.47711 * 54.99907 * 12 11 10 14 14 C 1.47204 * 109.47142 * 294.99226 * 12 11 10 15 15 N 7.45120 * 143.12426 * 163.43078 * 2 1 3 16 16 C 1.53004 * 109.47070 * 175.00094 * 12 11 10 17 17 C 1.50701 * 109.47211 * 185.00010 * 16 12 11 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 16 12 19 19 C 1.37871 * 119.99694 * 180.27574 * 17 16 12 20 20 N 1.31523 * 119.99908 * 179.72112 * 19 17 16 21 21 Si 1.86800 * 120.00405 * 359.71709 * 19 17 16 22 22 H 1.48500 * 109.47210 * 90.00069 * 21 19 17 23 23 H 1.48504 * 109.47424 * 210.00300 * 21 19 17 24 24 H 1.48502 * 109.46888 * 330.00390 * 21 19 17 25 25 C 1.47848 * 108.56484 * 0.99420 * 10 9 8 26 26 H 1.08996 * 109.46902 * 305.51482 * 1 2 3 27 27 H 1.09003 * 109.46720 * 65.51455 * 1 2 3 28 28 H 1.09004 * 109.46999 * 185.51012 * 1 2 3 29 29 H 1.08999 * 109.47299 * 59.99920 * 5 2 1 30 30 H 1.09007 * 109.47246 * 300.00000 * 5 2 1 31 31 H 1.09005 * 110.70802 * 87.83507 * 8 6 5 32 32 H 1.09003 * 110.70551 * 324.59977 * 8 6 5 33 33 H 1.09002 * 109.88664 * 262.87574 * 9 8 6 34 34 H 1.09001 * 109.88785 * 141.68962 * 9 8 6 35 35 H 1.08999 * 109.47398 * 309.87649 * 11 10 9 36 36 H 1.09000 * 109.46928 * 189.87750 * 11 10 9 37 37 H 1.09000 * 109.47211 * 64.99037 * 16 12 11 38 38 H 1.09007 * 109.46376 * 304.99579 * 16 12 11 39 39 H 0.96995 * 120.00181 * 179.97438 * 20 19 17 40 40 H 1.08999 * 110.37475 * 94.73192 * 25 10 9 41 41 H 1.09004 * 110.37091 * 217.07358 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7357 1.6152 6 6 3.7054 -0.8196 1.7980 7 1 4.1629 0.1652 1.7047 8 6 4.3318 -1.8209 0.7920 9 6 5.6152 -2.2822 1.5142 10 7 5.4174 -2.0387 2.9548 11 6 5.5895 -3.2769 3.7264 12 6 7.0635 -3.6866 3.7110 13 1 7.6744 -2.8599 4.0738 14 6 7.4641 -4.0260 2.3357 15 7 7.7745 -4.2857 1.2751 16 6 7.2640 -4.9041 4.6156 17 6 8.7324 -5.2327 4.6977 18 1 9.4508 -4.6334 4.1582 19 6 9.1581 -6.3023 5.4565 20 7 10.4391 -6.5924 5.5237 21 14 7.9154 -7.3393 6.3892 22 1 7.4539 -8.4552 5.5250 23 1 8.5502 -7.8909 7.6131 24 1 6.7542 -6.4960 6.7709 25 6 4.0663 -1.4729 3.1554 26 1 -0.3633 0.5970 0.8365 27 1 -0.3633 0.4260 -0.9353 28 1 -0.3633 -1.0230 0.0987 29 1 1.7610 -1.7369 1.6665 30 1 1.7609 -0.1171 2.4043 31 1 4.5755 -1.3228 -0.1464 32 1 3.6624 -2.6638 0.6198 33 1 6.4694 -1.7082 1.1549 34 1 5.7789 -3.3451 1.3367 35 1 4.9875 -4.0690 3.2814 36 1 5.2692 -3.1114 4.7551 37 1 6.7234 -5.7561 4.2033 38 1 6.8851 -4.6817 5.6132 39 1 10.7387 -7.3446 6.0578 40 1 3.3559 -2.2635 3.3969 41 1 4.0828 -0.7220 3.9454 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654554504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:09 Heat of formation + Delta-G solvation = -66.946908 kcal Electronic energy + Delta-G solvation = -22296.390365 eV Core-core repulsion = 18916.746225 eV Total energy + Delta-G solvation = -3379.644139 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 300.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.58648 -38.10809 -37.91822 -36.95718 -35.82264 -34.71584 -33.15729 -30.85109 -30.21266 -29.13784 -26.88516 -24.70490 -23.32197 -21.83212 -21.47946 -19.73229 -18.86756 -18.51459 -17.79521 -17.19307 -17.02484 -16.70515 -16.33841 -16.03145 -15.30462 -15.13411 -14.84143 -14.52726 -14.34177 -14.12431 -14.02334 -13.87507 -13.82388 -13.66234 -13.40893 -13.16257 -13.06205 -12.97070 -12.94788 -12.56269 -12.45895 -12.21393 -12.02022 -11.90428 -11.84706 -11.70618 -11.62802 -11.47261 -11.28980 -11.06693 -10.73247 -9.28394 -8.24014 -6.30198 -0.87165 1.43889 1.45713 1.57012 1.94694 1.95326 1.98184 2.42043 2.73215 2.99455 3.11936 3.17367 3.24687 3.46871 3.61217 3.67211 4.06073 4.13592 4.16509 4.18458 4.30521 4.38725 4.45189 4.55305 4.57537 4.71805 4.75432 4.84804 4.89818 4.94529 4.97711 5.01343 5.14633 5.23867 5.25670 5.46217 5.64157 5.95478 6.10246 6.27411 6.74775 6.80823 7.34205 8.93240 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.035133 B = 0.002875 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.775565 B = 9735.868325 C =10054.904067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.637 4.637 2 S 2.407 3.593 3 O -0.992 6.992 4 O -0.986 6.986 5 C -0.585 4.585 6 C -0.091 4.091 7 H 0.093 0.907 8 C -0.152 4.152 9 C 0.030 3.970 10 N -0.540 5.540 11 C 0.064 3.936 12 C 0.020 3.980 13 H 0.115 0.885 14 C 0.254 3.746 15 N -0.511 5.511 16 C 0.000 4.000 17 C -0.532 4.532 18 H 0.024 0.976 19 C -0.001 4.001 20 N -0.957 5.957 21 Si 0.952 3.048 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.218 1.218 25 C 0.056 3.944 26 H 0.156 0.844 27 H 0.131 0.869 28 H 0.153 0.847 29 H 0.162 0.838 30 H 0.176 0.824 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.127 0.873 37 H 0.025 0.975 38 H 0.070 0.930 39 H 0.265 0.735 40 H 0.076 0.924 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.258 13.771 -2.621 32.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.790 4.790 2 S 2.596 3.404 3 O -0.989 6.989 4 O -0.984 6.984 5 C -0.716 4.716 6 C -0.111 4.111 7 H 0.111 0.889 8 C -0.191 4.191 9 C -0.098 4.098 10 N -0.264 5.264 11 C -0.064 4.064 12 C -0.002 4.002 13 H 0.133 0.867 14 C -0.062 4.062 15 N -0.189 5.189 16 C -0.039 4.039 17 C -0.570 4.570 18 H 0.043 0.957 19 C -0.197 4.197 20 N -0.597 5.597 21 Si 0.774 3.226 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.140 1.140 25 C -0.071 4.071 26 H 0.175 0.825 27 H 0.149 0.851 28 H 0.172 0.828 29 H 0.180 0.820 30 H 0.194 0.806 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.145 0.855 37 H 0.044 0.956 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -27.698 13.946 -4.655 31.358 hybrid contribution -0.201 -1.508 0.499 1.602 sum -27.899 12.437 -4.156 30.827 Atomic orbital electron populations 1.30091 1.21685 1.13914 1.13278 1.07816 0.80083 0.74373 0.78150 1.93544 1.81122 1.36830 1.87394 1.93566 1.80869 1.67416 1.56500 1.30180 1.02637 1.16393 1.22413 1.22046 0.92350 1.00141 0.96595 0.88869 1.23111 0.97186 1.00122 0.98632 1.23025 0.98099 0.99874 0.88817 1.63582 1.29558 1.27143 1.06120 1.22388 0.92250 0.90431 1.01377 1.19192 0.98198 1.00522 0.82260 0.86698 1.29603 0.90921 0.90870 0.94773 1.81026 1.11069 1.11581 1.15231 1.19583 0.94800 0.92876 0.96665 1.21415 0.92993 1.13600 1.29004 0.95748 1.26111 0.97259 0.98741 0.97576 1.70105 1.17074 1.30108 1.42448 0.85650 0.80171 0.79133 0.77635 1.20313 1.21623 1.13981 1.23194 0.87950 0.99489 0.96512 0.82537 0.85057 0.82837 0.81959 0.80628 0.91258 0.89582 0.92746 0.93363 0.93257 0.85456 0.95632 0.91236 0.92678 0.90535 0.87569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -0.93 10.62 113.37 1.20 0.27 16 2 S 2.41 27.52 5.25 -56.49 -0.30 27.22 16 3 O -0.99 -20.58 18.10 -127.37 -2.30 -22.89 16 4 O -0.99 -20.80 16.44 -127.37 -2.09 -22.90 16 5 C -0.59 -3.35 5.31 71.98 0.38 -2.97 16 6 C -0.09 -1.39 3.06 -9.41 -0.03 -1.42 16 7 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 8 C -0.15 -3.38 5.13 31.78 0.16 -3.22 16 9 C 0.03 0.84 5.24 86.65 0.45 1.30 16 10 N -0.54 -12.61 5.16 -885.52 -4.57 -17.18 16 11 C 0.06 1.53 4.34 86.30 0.37 1.91 16 12 C 0.02 0.69 2.42 -12.60 -0.03 0.66 16 13 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 14 C 0.25 10.44 10.66 89.45 0.95 11.40 16 15 N -0.51 -23.29 17.69 20.00 0.35 -22.94 16 16 C 0.00 -0.01 3.49 29.85 0.10 0.09 16 17 C -0.53 -29.00 9.15 25.60 0.23 -28.77 16 18 H 0.02 1.52 7.84 -2.91 -0.02 1.50 16 19 C 0.00 -0.03 5.47 84.65 0.46 0.43 16 20 N -0.96 -59.81 13.96 21.45 0.30 -59.51 16 21 Si 0.95 41.07 27.46 68.60 1.88 42.95 16 22 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 24 H -0.22 -7.78 6.55 99.48 0.65 -7.13 16 25 C 0.06 0.82 6.15 86.77 0.53 1.35 16 26 H 0.16 -0.58 8.14 -2.39 -0.02 -0.60 16 27 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.15 -0.45 8.14 -2.39 -0.02 -0.47 16 29 H 0.16 0.07 8.11 -2.39 -0.02 0.05 16 30 H 0.18 -0.32 8.14 -2.39 -0.02 -0.34 16 31 H 0.07 1.74 7.60 -2.38 -0.02 1.72 16 32 H 0.09 1.73 8.01 -2.39 -0.02 1.71 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 34 H 0.05 1.55 4.78 -2.39 -0.01 1.54 16 35 H 0.05 1.12 7.96 -2.39 -0.02 1.10 16 36 H 0.13 2.24 8.07 -2.39 -0.02 2.22 16 37 H 0.03 1.00 7.56 -2.39 -0.02 0.98 16 38 H 0.07 2.42 7.21 -2.38 -0.02 2.40 16 39 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 40 H 0.08 0.79 7.71 -2.39 -0.02 0.77 16 41 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 Total: -1.00 -87.51 344.14 -0.96 -88.47 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: 0.96 Total: 5.73 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: 4.81 Total: -18.96 kcal Atomic # 7 Polarization: -95.72 SS G_CDS: -3.92 Total: -99.63 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -4.40 Total: -45.78 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 1.88 Total: 42.95 kcal Atomic # 16 Polarization: 27.52 SS G_CDS: -0.30 Total: 27.22 kcal Total: -87.51 -0.96 -88.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654554504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.524 kcal (2) G-P(sol) polarization free energy of solvation -87.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds