Wall clock time and date at job start Fri Apr 10 2020 20:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86794 * 120.00631 * 2 1 4 4 H 1.48500 * 109.47595 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47067 * 300.00373 * 3 2 1 6 6 H 1.48505 * 109.46928 * 59.99663 * 3 2 1 7 7 C 1.40034 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00012 * 170.10403 * 7 2 1 9 9 C 1.41550 * 119.99833 * 350.11068 * 7 2 1 10 10 C 1.41160 * 120.99582 * 153.79387 * 9 7 2 11 11 C 1.36589 * 119.12658 * 180.02562 * 10 9 7 12 12 N 1.32065 * 121.26146 * 0.02562 * 11 10 9 13 13 C 1.32495 * 122.22739 * 359.65763 * 12 11 10 14 14 N 1.39455 * 119.65157 * 180.32145 * 13 12 11 15 15 C 1.34775 * 120.00101 * 5.66783 * 14 13 12 16 16 O 1.21583 * 119.99860 * 5.06444 * 15 14 13 17 17 N 1.34776 * 120.00231 * 185.06533 * 15 14 13 18 18 C 1.46504 * 119.99671 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47004 * 179.97438 * 18 17 15 20 20 N 1.46494 * 109.47504 * 179.97438 * 19 18 17 21 21 C 1.36344 * 125.63790 * 269.69562 * 20 19 18 22 22 C 1.34855 * 108.21759 * 179.82897 * 21 20 19 23 23 C 1.40886 * 107.41671 * 0.42253 * 22 21 20 24 24 C 1.34849 * 107.42096 * 359.73902 * 23 22 21 25 25 C 1.38646 * 120.70098 * 0.63151 * 13 12 11 26 26 H 0.97006 * 119.99686 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.43978 * 0.02562 * 10 9 7 28 28 H 1.08004 * 119.37253 * 180.02562 * 11 10 9 29 29 H 0.97002 * 120.00252 * 185.67620 * 14 13 12 30 30 H 0.96993 * 120.00327 * 359.97438 * 17 15 14 31 31 H 1.09003 * 109.47135 * 299.99459 * 18 17 15 32 32 H 1.08997 * 109.47418 * 60.00233 * 18 17 15 33 33 H 1.09009 * 109.47149 * 299.99752 * 19 18 17 34 34 H 1.09001 * 109.47132 * 59.99207 * 19 18 17 35 35 H 1.08001 * 125.88674 * 359.95317 * 21 20 19 36 36 H 1.07997 * 126.28631 * 180.15670 * 22 21 20 37 37 H 1.08000 * 126.29470 * 179.73907 * 23 22 21 38 38 H 1.07997 * 125.89430 * 180.02562 * 24 23 22 39 39 H 1.08002 * 120.66382 * 179.68680 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.7015 1.3462 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8827 2.3963 1.2125 7 6 2.0075 -1.2127 0.0005 8 1 3.0754 -1.2198 -0.1602 9 6 1.3154 -2.4294 0.2116 10 6 1.8138 -3.6472 -0.2993 11 6 1.1146 -4.7987 -0.0734 12 7 -0.0146 -4.7916 0.6114 13 6 -0.5260 -3.6799 1.1193 14 7 -1.7189 -3.7355 1.8395 15 6 -2.2856 -4.9271 2.1138 16 8 -1.7117 -5.9564 1.8148 17 7 -3.4885 -4.9778 2.7197 18 6 -4.1041 -6.2732 3.0183 19 6 -5.4547 -6.0505 3.7018 20 7 -6.0707 -7.3458 4.0000 21 6 -6.9084 -8.0359 3.1747 22 6 -7.2630 -9.1798 3.7946 23 6 -6.6284 -9.1920 5.0524 24 6 -5.9057 -8.0578 5.1510 25 6 0.1089 -2.4609 0.9370 26 1 -0.4850 0.8401 0.0004 27 1 2.7356 -3.6684 -0.8615 28 1 1.4924 -5.7328 -0.4622 29 1 -2.1409 -2.9164 2.1429 30 1 -3.9462 -4.1567 2.9586 31 1 -4.2526 -6.8273 2.0914 32 1 -3.4514 -6.8416 3.6809 33 1 -5.3059 -5.4966 4.6288 34 1 -6.1076 -5.4818 3.0397 35 1 -7.2307 -7.7215 2.1930 36 1 -7.9169 -9.9439 3.4010 37 1 -6.7064 -9.9672 5.8003 38 1 -5.3001 -7.7643 5.9957 39 1 -0.3111 -1.5543 1.3471 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673992100.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:28 Heat of formation + Delta-G solvation = 66.983833 kcal Electronic energy + Delta-G solvation = -22557.204923 eV Core-core repulsion = 19080.217256 eV Total energy + Delta-G solvation = -3476.987667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.29123 -39.85028 -38.12519 -35.56440 -34.28279 -33.77684 -32.65693 -30.52920 -29.06570 -28.93036 -27.66471 -26.02235 -23.61413 -22.00000 -21.62725 -20.63298 -20.40077 -19.97067 -18.33098 -17.73815 -17.25667 -16.31834 -15.68347 -15.40176 -15.03621 -14.52212 -14.39558 -14.20912 -14.05494 -13.66860 -13.47261 -13.36243 -12.85498 -12.66138 -12.59434 -12.34813 -12.24404 -12.12209 -11.72139 -11.45651 -11.21488 -10.93763 -10.31271 -10.13983 -9.81136 -9.67859 -9.43082 -8.98964 -8.81214 -8.31330 -8.00206 -7.76055 -7.06673 -6.77647 -4.65479 2.07278 2.48912 2.65654 2.77129 2.92338 2.99680 3.05174 3.18432 3.21292 3.78345 3.83260 4.34531 4.45823 4.50220 4.68379 4.85893 4.89245 5.07215 5.33410 5.48207 5.56963 5.64930 5.67672 5.92251 6.13805 6.16073 6.46439 6.51191 6.57899 6.77354 6.83399 6.91689 7.06250 7.10639 7.17764 7.20409 7.39004 7.45783 7.84436 8.06888 8.30911 8.43421 8.69853 8.73581 9.08749 9.68982 10.06636 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.031864 B = 0.002472 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.516390 B =11325.782723 C =11954.653488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.075 3.925 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.453 4.453 8 H 0.082 0.918 9 C 0.142 3.858 10 C -0.281 4.281 11 C 0.119 3.881 12 N -0.554 5.554 13 C 0.353 3.647 14 N -0.666 5.666 15 C 0.693 3.307 16 O -0.530 6.530 17 N -0.755 5.755 18 C 0.129 3.871 19 C 0.096 3.904 20 N -0.445 5.445 21 C -0.014 4.014 22 C -0.203 4.203 23 C -0.203 4.203 24 C -0.014 4.014 25 C -0.242 4.242 26 H 0.280 0.720 27 H 0.102 0.898 28 H 0.123 0.877 29 H 0.405 0.595 30 H 0.392 0.608 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.161 0.839 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.160 0.840 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.859 -5.109 8.228 16.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.484 4.484 8 H 0.100 0.900 9 C 0.134 3.866 10 C -0.305 4.305 11 C -0.035 4.035 12 N -0.273 5.273 13 C 0.127 3.873 14 N -0.314 5.314 15 C 0.393 3.607 16 O -0.401 6.401 17 N -0.414 5.414 18 C 0.003 3.997 19 C -0.027 4.027 20 N -0.122 5.122 21 C -0.143 4.143 22 C -0.227 4.227 23 C -0.227 4.227 24 C -0.143 4.143 25 C -0.268 4.268 26 H 0.091 0.909 27 H 0.120 0.880 28 H 0.140 0.860 29 H 0.239 0.761 30 H 0.226 0.774 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.178 0.822 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.178 0.822 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.845 -6.442 7.998 16.446 hybrid contribution 0.295 2.430 0.034 2.449 sum -12.550 -4.011 8.031 15.430 Atomic orbital electron populations 1.69753 1.07577 1.29030 1.35820 1.25954 0.94888 1.01473 0.92014 0.86154 0.80870 0.80508 0.78573 1.18335 1.19884 1.19715 1.19622 0.95891 0.89973 1.42940 0.89983 1.17595 0.90323 0.92314 0.86409 1.21696 1.04207 0.94485 1.10115 1.21474 0.90581 0.96608 0.94817 1.67165 1.14854 1.28202 1.17055 1.17961 0.85709 0.90907 0.92760 1.42524 1.24393 1.07324 1.57172 1.16013 0.80652 0.84830 0.79241 1.91029 1.62074 1.31998 1.54980 1.44984 1.20920 1.08333 1.67178 1.21347 0.92022 0.85599 1.00721 1.21946 0.94677 0.83623 1.02417 1.43935 1.36821 1.16951 1.14452 1.21884 0.99600 0.95092 0.97714 1.20908 1.06428 0.98878 0.96532 1.20906 1.03734 0.99050 0.99050 1.21874 1.06215 0.94878 0.91380 1.21621 1.01088 0.95354 1.08721 0.90912 0.87957 0.85978 0.76084 0.77444 0.91017 0.91087 0.88647 0.88619 0.82202 0.84814 0.84821 0.82223 0.84943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.24 10.70 55.55 0.59 -18.64 16 2 C 0.07 1.77 5.31 -17.34 -0.09 1.68 16 3 Si 0.91 17.73 29.57 -169.99 -5.03 12.70 16 4 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 5 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.45 -11.52 9.14 -37.65 -0.34 -11.87 16 8 H 0.08 2.00 7.87 -52.49 -0.41 1.59 16 9 C 0.14 3.71 5.60 -106.55 -0.60 3.12 16 10 C -0.28 -6.89 9.85 -39.07 -0.38 -7.28 16 11 C 0.12 2.88 11.10 -18.05 -0.20 2.68 16 12 N -0.55 -14.29 7.90 -12.76 -0.10 -14.39 16 13 C 0.35 8.53 7.41 -154.68 -1.15 7.38 16 14 N -0.67 -12.83 5.40 -15.86 -0.09 -12.92 16 15 C 0.69 13.05 8.51 -86.92 -0.74 12.31 16 16 O -0.53 -12.57 14.64 5.29 0.08 -12.49 16 17 N -0.75 -9.43 5.56 -65.22 -0.36 -9.80 16 18 C 0.13 1.46 6.00 -4.04 -0.02 1.43 16 19 C 0.10 0.74 6.20 -4.04 -0.03 0.71 16 20 N -0.45 -4.26 2.75 -117.12 -0.32 -4.58 16 21 C -0.01 -0.13 11.43 -16.75 -0.19 -0.33 16 22 C -0.20 -2.08 10.86 -39.78 -0.43 -2.51 16 23 C -0.20 -2.07 10.86 -39.78 -0.43 -2.50 16 24 C -0.01 -0.14 11.43 -16.75 -0.19 -0.33 16 25 C -0.24 -6.07 8.62 -38.46 -0.33 -6.41 16 26 H 0.28 6.10 8.29 -40.82 -0.34 5.76 16 27 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 28 H 0.12 2.59 8.06 -52.48 -0.42 2.17 16 29 H 0.40 6.23 8.72 -40.82 -0.36 5.87 16 30 H 0.39 3.44 8.49 -40.82 -0.35 3.09 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 0.57 8.14 -51.92 -0.42 0.14 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.16 1.24 8.06 -52.49 -0.42 0.81 16 36 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.16 1.21 8.06 -52.49 -0.42 0.78 16 39 H 0.13 3.28 6.11 -52.49 -0.32 2.96 16 LS Contribution 340.55 15.07 5.13 5.13 Total: -1.00 -33.41 340.55 -10.02 -43.43 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -4.80 Total: 13.46 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -5.13 Total: -1.91 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: -0.28 Total: -60.33 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.08 Total: -12.49 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.70 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.41 -10.02 -43.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673992100.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.413 kcal (2) G-P(sol) polarization free energy of solvation -33.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds