Wall clock time and date at job start Fri Apr 10 2020 20:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86800 * 119.99933 * 2 1 4 4 H 1.48497 * 109.47269 * 274.96349 * 3 2 1 5 5 H 1.48502 * 109.47080 * 34.96588 * 3 2 1 6 6 H 1.48510 * 109.46915 * 154.96069 * 3 2 1 7 7 C 1.39933 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99995 * 196.78706 * 7 2 1 9 9 C 1.41405 * 120.00231 * 16.78896 * 7 2 1 10 10 C 1.40779 * 120.20860 * 25.16272 * 9 7 2 11 11 C 1.37641 * 119.88609 * 179.97438 * 10 9 7 12 12 C 1.38534 * 120.31642 * 0.02562 * 11 10 9 13 13 C 1.39246 * 120.43417 * 359.95531 * 12 11 10 14 14 N 1.39952 * 119.94724 * 180.02562 * 13 12 11 15 15 C 1.34770 * 119.99987 * 145.77870 * 14 13 12 16 16 O 1.21582 * 120.00354 * 354.84000 * 15 14 13 17 17 N 1.34782 * 120.00137 * 174.84527 * 15 14 13 18 18 C 1.46495 * 120.00316 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47411 * 179.97438 * 18 17 15 20 20 N 1.46495 * 109.47332 * 180.02562 * 19 18 17 21 21 C 1.36885 * 126.39546 * 270.03259 * 20 19 18 22 22 C 1.34664 * 106.81764 * 179.97438 * 21 20 19 23 23 N 1.34131 * 108.02268 * 359.97438 * 22 21 20 24 24 C 1.30502 * 109.25521 * 359.97438 * 23 22 21 25 25 C 1.38274 * 120.10285 * 0.27463 * 13 12 11 26 26 H 0.97001 * 120.00010 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.05961 * 0.02905 * 10 9 7 28 28 H 1.07999 * 119.83958 * 180.02562 * 11 10 9 29 29 H 1.08002 * 119.77977 * 179.97438 * 12 11 10 30 30 H 0.97004 * 119.99614 * 325.76602 * 14 13 12 31 31 H 0.97000 * 119.99370 * 359.97438 * 17 15 14 32 32 H 1.09003 * 109.47076 * 60.00034 * 18 17 15 33 33 H 1.09003 * 109.47414 * 300.00189 * 18 17 15 34 34 H 1.08994 * 109.46946 * 59.99757 * 19 18 17 35 35 H 1.09010 * 109.46814 * 300.00212 * 19 18 17 36 36 H 1.08002 * 126.59138 * 359.97438 * 21 20 19 37 37 H 1.08000 * 125.98944 * 180.26088 * 22 21 20 38 38 H 1.07995 * 125.64825 * 180.02562 * 24 23 22 39 39 H 1.07995 * 120.16069 * 179.74253 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3849 2.1070 -1.3948 5 1 1.4961 2.6201 0.8024 6 1 3.5884 1.4121 0.5926 7 6 2.0079 -1.2119 0.0005 8 1 3.0534 -1.2317 0.2707 9 6 1.3461 -2.4106 -0.3526 10 6 0.2107 -2.3743 -1.1841 11 6 -0.4280 -3.5452 -1.5242 12 6 0.0407 -4.7601 -1.0516 13 6 1.1628 -4.8114 -0.2287 14 7 1.6279 -6.0445 0.2425 15 6 2.9496 -6.2461 0.4118 16 8 3.7439 -5.3923 0.0676 17 7 3.3911 -7.3942 0.9627 18 6 4.8278 -7.6137 1.1463 19 6 5.0567 -8.9840 1.7872 20 7 6.4934 -9.2031 1.9713 21 6 7.3484 -9.7823 1.0728 22 6 8.5689 -9.7842 1.6418 23 7 8.4623 -9.2210 2.8545 24 6 7.2221 -8.8698 3.0583 25 6 1.8152 -3.6456 0.1278 26 1 -0.4850 0.8401 -0.0004 27 1 -0.1581 -1.4295 -1.5553 28 1 -1.2988 -3.5165 -2.1624 29 1 -0.4674 -5.6735 -1.3235 30 1 0.9988 -6.7539 0.4473 31 1 2.7574 -8.0752 1.2376 32 1 5.2340 -6.8373 1.7947 33 1 5.3276 -7.5769 0.1783 34 1 4.6504 -9.7606 1.1393 35 1 4.5570 -9.0203 2.7553 36 1 7.0932 -10.1642 0.0953 37 1 9.4757 -10.1673 1.1975 38 1 6.8415 -8.3922 3.9491 39 1 2.6831 -3.6840 0.7694 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677654251.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:32 Heat of formation + Delta-G solvation = 61.391944 kcal Electronic energy + Delta-G solvation = -22567.891336 eV Core-core repulsion = 19090.661187 eV Total energy + Delta-G solvation = -3477.230149 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.28462 -40.03902 -37.52336 -35.96741 -34.44423 -33.63861 -32.95876 -29.84595 -29.81965 -29.19847 -27.58665 -25.30107 -23.93622 -21.71605 -21.59699 -21.22298 -20.88087 -20.15172 -18.34057 -17.72314 -17.39037 -16.18110 -15.87050 -15.40050 -15.15492 -14.75591 -14.65406 -14.38587 -14.08628 -14.06732 -13.95750 -13.41601 -13.08711 -12.87959 -12.60487 -12.24164 -12.02276 -11.65171 -11.20593 -11.13392 -10.92974 -10.45502 -10.27764 -10.22282 -9.96365 -9.73476 -9.55129 -9.20592 -9.08656 -9.03928 -8.77456 -7.44993 -6.91543 -6.70812 -4.33378 1.75389 2.23484 2.72237 2.87924 2.95553 3.06055 3.10300 3.15840 3.21883 3.62462 3.97245 4.15376 4.26334 4.43532 4.49441 4.63789 4.65415 4.70044 5.17118 5.27715 5.46898 5.52330 5.71682 5.96748 6.21717 6.29106 6.38564 6.47512 6.66983 6.74255 6.87848 7.03803 7.08499 7.22477 7.30718 7.66300 7.78852 7.82583 7.98323 8.10927 8.22556 8.36657 8.66272 8.85698 8.96290 9.00146 10.22052 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.019077 B = 0.002760 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.421279 B =10143.176456 C =11342.297259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.458 4.458 8 H 0.078 0.922 9 C 0.120 3.880 10 C -0.172 4.172 11 C -0.092 4.092 12 C -0.263 4.263 13 C 0.167 3.833 14 N -0.679 5.679 15 C 0.700 3.300 16 O -0.561 6.561 17 N -0.752 5.752 18 C 0.127 3.873 19 C 0.096 3.904 20 N -0.457 5.457 21 C -0.055 4.055 22 C -0.030 4.030 23 N -0.496 5.496 24 C 0.186 3.814 25 C -0.210 4.210 26 H 0.279 0.721 27 H 0.119 0.881 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.394 0.606 31 H 0.394 0.606 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.174 0.826 37 H 0.169 0.831 38 H 0.205 0.795 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.913 -17.530 3.260 18.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.117 3.883 10 C -0.192 4.192 11 C -0.111 4.111 12 C -0.285 4.285 13 C 0.075 3.925 14 N -0.325 5.325 15 C 0.400 3.600 16 O -0.436 6.436 17 N -0.410 5.410 18 C 0.001 3.999 19 C -0.027 4.027 20 N -0.141 5.141 21 C -0.187 4.187 22 C -0.178 4.178 23 N -0.214 5.214 24 C -0.097 4.097 25 C -0.232 4.232 26 H 0.090 0.910 27 H 0.137 0.863 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.228 0.772 31 H 0.227 0.773 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.192 0.808 37 H 0.187 0.813 38 H 0.222 0.778 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.999 -16.443 3.514 17.853 hybrid contribution -1.063 -0.099 -0.361 1.127 sum 4.937 -16.542 3.153 17.549 Atomic orbital electron populations 1.69828 1.07523 1.29078 1.35679 1.25903 0.94744 1.01279 0.92249 0.86293 0.80667 0.80603 0.79135 1.19339 1.20325 1.18528 1.19604 0.97799 0.90928 1.40389 0.90347 1.17495 0.90872 0.91634 0.88306 1.21351 0.99389 0.96873 1.01591 1.20449 0.98536 0.92670 0.99456 1.19997 1.02600 0.96889 1.09000 1.17214 0.95949 0.82485 0.96833 1.42549 1.05062 1.15898 1.68996 1.15888 0.83106 0.82012 0.79012 1.91008 1.54229 1.43610 1.54746 1.44869 1.07191 1.20034 1.68931 1.21360 0.81508 0.95261 1.01764 1.21981 0.78644 0.98374 1.03744 1.45392 1.08606 1.45114 1.14942 1.22787 0.91148 1.06996 0.97762 1.22328 0.97330 1.05371 0.92753 1.70316 1.17405 1.16004 1.17651 1.25098 0.87288 1.03946 0.93350 1.20983 1.04316 0.90925 1.06951 0.90967 0.86307 0.89024 0.89367 0.77225 0.77257 0.90706 0.90874 0.88310 0.88019 0.80827 0.81336 0.77805 0.87607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.72 10.94 55.55 0.61 -20.11 16 2 C 0.08 1.94 5.16 -17.35 -0.09 1.85 16 3 Si 0.91 19.20 29.59 -169.99 -5.03 14.17 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.46 -12.62 9.05 -37.74 -0.34 -12.97 16 8 H 0.08 2.15 7.90 -52.48 -0.41 1.73 16 9 C 0.12 3.31 5.57 -106.85 -0.59 2.71 16 10 C -0.17 -4.52 8.69 -38.84 -0.34 -4.86 16 11 C -0.09 -2.14 10.02 -39.69 -0.40 -2.53 16 12 C -0.26 -5.71 9.97 -39.10 -0.39 -6.10 16 13 C 0.17 3.74 6.25 -83.76 -0.52 3.21 16 14 N -0.68 -11.55 5.34 -14.27 -0.08 -11.62 16 15 C 0.70 11.96 8.29 -86.92 -0.72 11.24 16 16 O -0.56 -12.62 14.10 5.29 0.07 -12.55 16 17 N -0.75 -8.01 5.56 -65.23 -0.36 -8.37 16 18 C 0.13 1.22 6.00 -4.04 -0.02 1.20 16 19 C 0.10 0.55 6.26 -4.04 -0.03 0.52 16 20 N -0.46 -3.73 2.75 -118.58 -0.33 -4.06 16 21 C -0.05 -0.46 11.58 -16.56 -0.19 -0.65 16 22 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 23 N -0.50 -5.97 11.25 -14.67 -0.17 -6.14 16 24 C 0.19 1.76 12.56 -90.37 -1.14 0.63 16 25 C -0.21 -5.45 8.39 -38.69 -0.32 -5.77 16 26 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 27 H 0.12 3.20 6.17 -52.48 -0.32 2.87 16 28 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 29 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.39 4.95 8.84 -40.82 -0.36 4.59 16 31 H 0.39 2.61 8.49 -40.82 -0.35 2.26 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.10 0.38 8.14 -51.92 -0.42 -0.04 16 36 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.21 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.11 2.85 6.48 -52.49 -0.34 2.51 16 LS Contribution 339.54 15.07 5.12 5.12 Total: -1.00 -34.98 339.54 -10.19 -45.18 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -4.73 Total: 10.42 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -5.31 Total: -12.04 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.32 Total: -50.30 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.07 Total: -12.55 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.98 -10.19 -45.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677654251.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.568 kcal (2) G-P(sol) polarization free energy of solvation -34.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds