Wall clock time and date at job start Fri Apr 10 2020 20:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99944 * 2 1 4 4 H 1.48509 * 109.47184 * 240.00290 * 3 2 1 5 5 H 1.48498 * 109.47356 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47183 * 120.00570 * 3 2 1 7 7 C 1.38814 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99415 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00249 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99805 * 176.89294 * 9 7 2 11 11 C 1.52995 * 115.55145 * 294.99859 * 10 9 7 12 12 N 1.46501 * 109.47332 * 324.36811 * 11 10 9 13 13 C 1.34773 * 120.00598 * 174.42390 * 12 11 10 14 14 O 1.21623 * 119.99754 * 359.97438 * 13 12 11 15 15 C 1.47387 * 120.00510 * 180.02562 * 13 12 11 16 16 N 1.31573 * 126.82361 * 0.02562 * 15 13 12 17 17 N 1.28373 * 111.96882 * 179.97438 * 16 15 13 18 18 H 0.97004 * 124.37434 * 180.02562 * 17 16 15 19 19 C 1.37050 * 111.25563 * 0.02562 * 17 16 15 20 20 C 1.39128 * 134.72278 * 180.02562 * 19 17 16 21 21 C 1.36685 * 119.77939 * 179.97438 * 20 19 17 22 22 C 1.38898 * 120.89759 * 0.02562 * 21 20 19 23 23 C 1.36717 * 120.52348 * 359.97438 * 22 21 20 24 24 C 1.39195 * 119.51016 * 359.73384 * 23 22 21 25 25 C 1.52996 * 117.49626 * 149.33252 * 10 9 7 26 26 C 1.52998 * 117.49944 * 80.67194 * 10 9 7 27 27 H 0.96997 * 120.00046 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99640 * 356.62151 * 9 7 2 29 29 H 1.09003 * 109.47260 * 84.36458 * 11 10 9 30 30 H 1.08996 * 109.47646 * 204.36827 * 11 10 9 31 31 H 0.97005 * 119.99551 * 354.41828 * 12 11 10 32 32 H 1.07990 * 120.11076 * 0.02562 * 20 19 17 33 33 H 1.08001 * 119.55192 * 180.02562 * 21 20 19 34 34 H 1.08007 * 119.73771 * 179.97438 * 22 21 20 35 35 H 1.08000 * 120.24475 * 180.02562 * 23 22 21 36 36 H 1.09004 * 117.50356 * 359.97438 * 25 10 9 37 37 H 1.09003 * 117.50198 * 145.02130 * 25 10 9 38 38 H 1.09001 * 117.49884 * 214.97739 * 26 10 9 39 39 H 1.08997 * 117.49660 * 359.97181 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0564 -3.6558 -0.0699 11 6 2.8312 -3.9008 -1.3662 12 7 2.0824 -3.3438 -2.4954 13 6 2.6254 -3.3419 -3.7290 14 8 3.7373 -3.8023 -3.9046 15 6 1.8722 -2.7810 -4.8649 16 7 0.6686 -2.2508 -4.8283 17 7 0.2849 -1.8500 -5.9859 18 1 -0.5718 -1.4316 -6.1644 19 6 1.2421 -2.0897 -6.9371 20 6 1.3404 -1.8621 -8.3061 21 6 2.4716 -2.2348 -8.9767 22 6 3.5291 -2.8402 -8.3101 23 6 3.4587 -3.0755 -6.9652 24 6 2.3182 -2.6983 -6.2619 25 6 1.4315 -4.8701 0.6198 26 6 2.6626 -4.1937 1.2278 27 1 -0.4850 0.8400 0.0004 28 1 0.3569 -2.3888 0.0493 29 1 3.8064 -3.4179 -1.3034 30 1 2.9653 -4.9725 -1.5124 31 1 1.1956 -2.9764 -2.3553 32 1 0.5260 -1.3919 -8.8370 33 1 2.5442 -2.0560 -10.0393 34 1 4.4141 -3.1274 -8.8586 35 1 4.2838 -3.5462 -6.4513 36 1 0.4767 -4.7258 1.1255 37 1 1.5726 -5.8437 0.1502 38 1 3.6133 -4.7224 1.1580 39 1 2.5180 -3.6040 2.1331 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754532829.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:47 Heat of formation + Delta-G solvation = 93.232775 kcal Electronic energy + Delta-G solvation = -23642.149572 eV Core-core repulsion = 20166.300145 eV Total energy + Delta-G solvation = -3475.849427 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.38797 -39.00190 -37.75947 -37.36665 -33.56480 -33.07088 -32.44195 -30.20708 -29.91948 -29.64845 -26.73488 -23.92156 -23.64764 -22.93312 -22.27841 -21.80030 -19.71469 -19.03883 -18.14295 -17.34368 -17.09214 -16.46583 -15.74473 -15.63962 -15.29760 -14.77192 -14.37955 -14.29436 -14.10340 -13.85179 -13.63747 -13.07497 -12.97260 -12.36940 -12.20033 -12.07727 -11.86578 -11.24896 -10.98029 -10.90959 -10.88257 -10.82260 -10.33609 -10.27500 -10.11065 -9.74928 -9.67947 -9.31643 -8.86672 -8.80514 -8.43718 -8.06288 -7.08924 -5.83375 -3.14075 0.85852 1.33236 2.04657 2.73814 3.41846 3.45882 3.47716 3.51485 3.59370 3.88360 4.40194 4.45565 4.54733 4.58645 4.84754 4.90391 5.17102 5.25619 5.33298 5.34348 5.51210 5.53811 5.59330 5.67242 5.91165 5.94232 6.15813 6.16402 6.23735 6.39752 6.41549 6.46327 6.48001 6.63740 6.75325 6.80386 6.99236 7.05081 7.71221 7.81898 8.18981 8.34019 8.68878 9.46071 9.97729 10.33454 11.38064 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.004596 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.290387 B = 6090.985947 C = 7196.710968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.006 4.006 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.235 4.235 8 H 0.071 0.929 9 N -0.688 5.688 10 C 0.127 3.873 11 C 0.151 3.849 12 N -0.681 5.681 13 C 0.600 3.400 14 O -0.549 6.549 15 C 0.012 3.988 16 N -0.192 5.192 17 N -0.416 5.416 18 H 0.446 0.554 19 C 0.062 3.938 20 C -0.122 4.122 21 C -0.087 4.087 22 C -0.147 4.147 23 C -0.040 4.040 24 C -0.109 4.109 25 C -0.186 4.186 26 C -0.191 4.191 27 H 0.256 0.744 28 H 0.389 0.611 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.416 0.584 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.139 0.861 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.226 -7.123 -14.806 16.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.735 3.265 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.366 4.366 8 H 0.089 0.911 9 N -0.328 5.328 10 C 0.034 3.966 11 C 0.025 3.975 12 N -0.332 5.332 13 C 0.383 3.617 14 O -0.426 6.426 15 C -0.160 4.160 16 N -0.021 5.021 17 N -0.135 5.135 18 H 0.291 0.709 19 C -0.051 4.051 20 C -0.143 4.143 21 C -0.108 4.108 22 C -0.166 4.166 23 C -0.060 4.060 24 C -0.116 4.116 25 C -0.223 4.223 26 C -0.231 4.231 27 H 0.066 0.934 28 H 0.224 0.776 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.254 0.746 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.156 0.844 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.215 -7.023 -14.146 15.840 hybrid contribution -0.253 1.410 -0.436 1.497 sum 0.962 -5.613 -14.582 15.654 Atomic orbital electron populations 1.69641 1.04997 1.25864 1.57238 1.24704 0.95460 0.97562 1.02531 0.86311 0.78621 0.83563 0.77986 1.21242 1.21733 1.21150 1.19085 0.91041 0.83359 1.43088 0.91138 1.41791 1.05460 0.98484 1.87042 1.20198 0.98330 0.87549 0.90571 1.21138 0.95171 0.96760 0.84436 1.45641 1.21676 1.59896 1.05997 1.16609 0.84774 0.78852 0.81448 1.90742 1.19021 1.48314 1.84572 1.22898 0.92485 1.06783 0.93849 1.73082 1.14031 1.09034 1.05999 1.43099 1.17305 1.50358 1.02766 0.70856 1.19255 0.90841 1.02416 0.92624 1.19746 0.99980 1.04840 0.89774 1.20697 0.92720 0.97540 0.99819 1.20811 0.99459 1.02062 0.94270 1.20424 0.96022 0.96108 0.93446 1.19463 0.96019 1.04388 0.91776 1.23195 0.98035 0.96077 1.05042 1.23370 0.95921 1.04115 0.99742 0.93433 0.77618 0.91243 0.92089 0.74561 0.85591 0.85358 0.85431 0.84361 0.89087 0.89351 0.89859 0.88687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.91 13.06 55.49 0.72 -26.18 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.90 22.40 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.24 -6.26 9.81 -15.06 -0.15 -6.40 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.69 -16.21 4.49 -47.24 -0.21 -16.42 16 10 C 0.13 2.45 2.46 -131.83 -0.32 2.13 16 11 C 0.15 2.83 5.69 -4.04 -0.02 2.81 16 12 N -0.68 -13.35 5.39 -61.40 -0.33 -13.69 16 13 C 0.60 11.87 7.81 -12.54 -0.10 11.77 16 14 O -0.55 -11.56 16.39 5.26 0.09 -11.48 16 15 C 0.01 0.21 7.32 -80.76 -0.59 -0.38 16 16 N -0.19 -3.29 11.80 34.46 0.41 -2.88 16 17 N -0.42 -5.58 6.85 32.34 0.22 -5.35 16 18 H 0.45 4.25 8.96 -190.49 -1.71 2.54 16 19 C 0.06 0.83 7.38 -84.21 -0.62 0.21 16 20 C -0.12 -1.26 10.03 -39.81 -0.40 -1.65 16 21 C -0.09 -0.82 9.96 -39.90 -0.40 -1.22 16 22 C -0.15 -1.57 9.98 -39.89 -0.40 -1.97 16 23 C -0.04 -0.55 9.87 -39.78 -0.39 -0.94 16 24 C -0.11 -1.74 6.34 -105.05 -0.67 -2.41 16 25 C -0.19 -3.00 10.11 -26.70 -0.27 -3.27 16 26 C -0.19 -3.29 10.18 -26.69 -0.27 -3.56 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.39 9.75 8.03 -40.82 -0.33 9.42 16 29 H 0.07 1.39 8.13 -51.93 -0.42 0.96 16 30 H 0.06 1.02 7.91 -51.93 -0.41 0.61 16 31 H 0.42 8.56 7.52 -40.82 -0.31 8.25 16 32 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 33 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 35 H 0.14 1.94 7.65 -52.49 -0.40 1.54 16 36 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.09 1.23 8.06 -51.93 -0.42 0.82 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 LS Contribution 342.30 15.07 5.16 5.16 Total: -1.00 -31.77 342.30 -9.74 -41.51 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -6.08 Total: 17.12 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -4.70 Total: -5.17 kcal Atomic # 7 Polarization: -65.33 SS G_CDS: 0.81 Total: -64.52 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.77 -9.74 -41.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754532829.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.742 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds