Wall clock time and date at job start Fri Apr 10 2020 20:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86797 * 120.00122 * 2 1 4 4 H 1.48505 * 109.46984 * 274.45109 * 3 2 1 5 5 H 1.48502 * 109.46969 * 34.44862 * 3 2 1 6 6 H 1.48501 * 109.47155 * 154.45249 * 3 2 1 7 7 C 1.38815 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00141 * 188.99920 * 7 2 1 9 9 N 1.36934 * 120.00337 * 8.99557 * 7 2 1 10 10 C 1.48011 * 127.83998 * 15.62225 * 9 7 2 11 11 C 1.54393 * 104.64850 * 140.40407 * 10 9 7 12 12 H 1.08991 * 118.18276 * 244.22854 * 11 10 9 13 13 C 1.52999 * 118.11751 * 87.22277 * 11 10 9 14 14 H 1.08994 * 117.44417 * 16.05910 * 13 11 10 15 15 C 1.53002 * 117.44014 * 160.81273 * 13 11 10 16 16 N 1.46508 * 109.46878 * 185.16503 * 15 13 11 17 17 C 1.34777 * 119.99633 * 179.97438 * 16 15 13 18 18 O 1.21275 * 120.00117 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99904 * 180.27447 * 17 16 15 20 20 C 1.53002 * 115.54766 * 34.14164 * 19 17 16 21 21 F 1.39896 * 109.47052 * 85.58444 * 20 19 17 22 22 F 1.39899 * 109.46881 * 205.58524 * 20 19 17 23 23 C 1.52999 * 117.49880 * 248.47521 * 19 17 16 24 24 C 1.52995 * 117.50185 * 179.80900 * 19 17 16 25 25 C 1.53003 * 60.49652 * 268.43485 * 13 11 10 26 26 H 1.08996 * 119.54396 * 248.25312 * 25 13 11 27 27 C 1.48148 * 127.84089 * 195.56315 * 9 7 2 28 28 H 0.97002 * 120.00112 * 359.97438 * 1 2 3 29 29 H 1.09006 * 110.36668 * 21.62824 * 10 9 7 30 30 H 1.08997 * 110.42054 * 259.21614 * 10 9 7 31 31 H 1.08996 * 109.47460 * 65.16803 * 15 13 11 32 32 H 1.08995 * 109.47132 * 305.16190 * 15 13 11 33 33 H 0.96997 * 120.00214 * 359.97438 * 16 15 13 34 34 H 1.09006 * 109.47221 * 325.58532 * 20 19 17 35 35 H 1.08998 * 117.50158 * 359.97438 * 23 19 17 36 36 H 1.09004 * 117.49744 * 145.02147 * 23 19 17 37 37 H 1.08997 * 117.50425 * 214.97965 * 24 19 17 38 38 H 1.09003 * 117.49417 * 0.02562 * 24 19 17 39 39 H 1.08999 * 110.40745 * 100.80648 * 27 9 7 40 40 H 1.08995 * 110.50421 * 338.42259 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4035 2.1007 -1.3959 5 1 1.4977 2.6236 0.7920 6 1 3.5916 1.4148 0.6038 7 6 2.0102 -1.2022 -0.0005 8 1 3.0803 -1.2080 0.1458 9 7 1.3382 -2.3807 -0.1865 10 6 -0.0337 -2.5712 -0.7084 11 6 0.0628 -3.8177 -1.6143 12 1 -0.1249 -3.6946 -2.6809 13 6 -0.1199 -5.1932 -0.9699 14 1 -0.5683 -5.2273 0.0230 15 6 -0.4704 -6.3628 -1.8919 16 7 -0.7248 -7.5601 -1.0868 17 6 -1.0543 -8.7198 -1.6893 18 8 -1.1407 -8.7721 -2.8978 19 6 -1.3220 -9.9499 -0.8608 20 6 -1.9835 -9.7004 0.4961 21 9 -3.3718 -9.6414 0.3343 22 9 -1.6599 -10.7427 1.3713 23 6 -0.3155 -11.0982 -0.9555 24 6 -1.6958 -11.2342 -1.6033 25 6 1.2843 -4.5976 -1.0894 26 1 2.0068 -5.0558 -1.7649 27 6 1.8198 -3.7546 0.0880 28 1 -0.4850 0.8401 0.0004 29 1 -0.3425 -1.7021 -1.2895 30 1 -0.7307 -2.7493 0.1103 31 1 0.3607 -6.5517 -2.5713 32 1 -1.3621 -6.1165 -2.4683 33 1 -0.6561 -7.5182 -0.1202 34 1 -1.6251 -8.7564 0.9070 35 1 0.5401 -10.9643 -1.6174 36 1 -0.1249 -11.6763 -0.0513 37 1 -2.4126 -11.9017 -1.1251 38 1 -1.7476 -11.1896 -2.6912 39 1 1.4133 -4.1184 1.0317 40 1 2.9092 -3.7801 0.1092 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755422994.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:51 Heat of formation + Delta-G solvation = -52.081851 kcal Electronic energy + Delta-G solvation = -24046.705194 eV Core-core repulsion = 20113.865265 eV Total energy + Delta-G solvation = -3932.839929 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.40393 -47.38028 -40.38063 -38.92578 -36.86267 -35.16305 -33.44790 -30.97010 -28.63238 -27.21282 -27.01844 -25.07757 -23.14779 -22.98091 -21.26217 -20.53171 -19.66837 -19.31605 -18.62266 -17.58432 -17.52962 -16.87039 -16.18877 -16.01059 -15.25955 -15.08129 -14.71472 -14.31881 -14.17721 -13.97302 -13.74616 -13.71889 -13.17269 -13.09800 -12.84138 -12.73019 -12.15375 -11.92121 -11.87712 -11.32695 -11.18844 -11.08688 -10.93660 -10.87299 -10.70265 -10.38334 -10.24528 -10.15926 -9.78987 -9.54450 -9.22843 -9.07580 -8.68508 -6.91605 -5.83954 -3.18652 2.08404 2.73229 2.99063 3.32273 3.35566 3.41081 3.43097 3.71083 3.81836 4.04223 4.19074 4.33357 4.43033 4.60096 4.74619 4.79645 5.10405 5.16084 5.22025 5.31671 5.38118 5.41719 5.43069 5.65238 5.70993 5.79474 5.82971 5.89813 6.15565 6.17076 6.48071 6.59176 6.63928 6.85460 7.18535 7.30682 7.48663 7.67698 7.87922 8.16771 9.06984 9.69592 10.46124 11.30299 Molecular weight = 300.14amu Principal moments of inertia in cm(-1) A = 0.031658 B = 0.002650 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.240919 B =10563.275850 C =10765.075591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.594 5.594 10 C 0.183 3.817 11 C -0.160 4.160 12 H 0.104 0.896 13 C -0.153 4.153 14 H 0.103 0.897 15 C 0.154 3.846 16 N -0.719 5.719 17 C 0.557 3.443 18 O -0.528 6.528 19 C -0.240 4.240 20 C 0.305 3.695 21 F -0.194 7.194 22 F -0.196 7.196 23 C -0.128 4.128 24 C -0.124 4.124 25 C -0.171 4.171 26 H 0.103 0.897 27 C 0.154 3.846 28 H 0.255 0.745 29 H 0.091 0.909 30 H 0.024 0.976 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.399 0.601 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.118 0.882 39 H 0.024 0.976 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.758 -21.633 -0.182 21.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.317 5.317 10 C 0.058 3.942 11 C -0.180 4.180 12 H 0.122 0.878 13 C -0.172 4.172 14 H 0.121 0.879 15 C 0.032 3.968 16 N -0.371 5.371 17 C 0.341 3.659 18 O -0.404 6.404 19 C -0.244 4.244 20 C 0.251 3.749 21 F -0.175 7.175 22 F -0.177 7.177 23 C -0.165 4.165 24 C -0.161 4.161 25 C -0.191 4.191 26 H 0.121 0.879 27 C 0.027 3.973 28 H 0.065 0.935 29 H 0.109 0.891 30 H 0.041 0.959 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.234 0.766 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.128 0.872 38 H 0.137 0.863 39 H 0.041 0.959 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.847 -21.351 -1.004 21.563 hybrid contribution 0.326 0.895 0.561 1.105 sum -2.521 -20.456 -0.443 20.615 Atomic orbital electron populations 1.69891 1.05073 1.25464 1.55709 1.24902 0.95656 0.98011 1.01660 0.86087 0.78725 0.83252 0.77595 1.21492 1.21640 1.20484 1.19019 0.90825 0.82352 1.43494 0.90528 1.45171 1.13270 1.00006 1.73286 1.21053 0.86870 0.92733 0.93588 1.24230 1.02011 0.91634 1.00161 0.87809 1.22528 1.00566 0.93856 1.00245 0.87887 1.20951 1.01363 0.81826 0.92679 1.46030 1.70389 1.09800 1.10834 1.18887 0.76712 0.82726 0.87565 1.90728 1.51603 1.84372 1.13723 1.22640 1.10860 0.92940 0.97987 1.20952 0.76976 0.90043 0.86948 1.93035 1.31526 1.96900 1.96036 1.92987 1.92340 1.61707 1.70687 1.23183 0.93900 0.95350 1.04058 1.23081 0.98188 0.93340 1.01501 1.23989 0.89765 1.02562 1.02760 0.87872 1.21139 0.97179 0.86031 0.92915 0.93520 0.89117 0.95852 0.91102 0.90755 0.76561 0.86726 0.87049 0.86434 0.87230 0.86323 0.95858 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.43 10.86 55.49 0.60 -25.82 16 2 C -0.01 -0.14 5.40 -17.43 -0.09 -0.24 16 3 Si 0.91 21.67 29.56 -169.99 -5.03 16.64 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.23 -6.28 10.35 -15.06 -0.16 -6.44 16 8 H 0.08 2.03 7.85 -52.48 -0.41 1.62 16 9 N -0.59 -14.88 3.38 -168.96 -0.57 -15.45 16 10 C 0.18 4.28 5.69 -2.48 -0.01 4.26 16 11 C -0.16 -2.89 6.85 -89.29 -0.61 -3.50 16 12 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 13 C -0.15 -2.19 5.40 -90.62 -0.49 -2.68 16 14 H 0.10 1.45 8.04 -51.93 -0.42 1.03 16 15 C 0.15 1.94 5.95 -4.04 -0.02 1.91 16 16 N -0.72 -7.60 5.45 -60.29 -0.33 -7.93 16 17 C 0.56 6.49 7.39 -10.99 -0.08 6.41 16 18 O -0.53 -8.05 16.26 5.56 0.09 -7.96 16 19 C -0.24 -2.14 2.36 -155.66 -0.37 -2.50 16 20 C 0.30 2.50 5.27 37.16 0.20 2.69 16 21 F -0.19 -2.02 17.29 2.25 0.04 -1.98 16 22 F -0.20 -1.68 15.91 2.25 0.04 -1.64 16 23 C -0.13 -0.90 9.63 -26.69 -0.26 -1.16 16 24 C -0.12 -1.00 9.69 -26.69 -0.26 -1.26 16 25 C -0.17 -2.86 6.74 -89.29 -0.60 -3.46 16 26 H 0.10 1.59 8.12 -51.93 -0.42 1.17 16 27 C 0.15 3.09 7.04 -2.41 -0.02 3.07 16 28 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 29 H 0.09 2.39 6.51 -51.93 -0.34 2.05 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.93 7.94 -51.93 -0.41 0.52 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.40 3.25 6.70 -40.82 -0.27 2.98 16 34 H 0.12 0.67 6.38 -51.93 -0.33 0.34 16 35 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.12 0.68 7.22 -51.93 -0.37 0.31 16 37 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.12 1.05 7.67 -51.93 -0.40 0.65 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 339.52 15.07 5.12 5.12 Total: -1.00 -31.82 339.52 -8.29 -40.11 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.47 Total: 1.79 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -2.78 Total: -2.88 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: -0.30 Total: -49.20 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.09 Total: -7.96 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.07 Total: -3.62 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.82 -8.29 -40.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755422994.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.975 kcal (2) G-P(sol) polarization free energy of solvation -31.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds