Wall clock time and date at job start Fri Apr 10 2020 20:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47426 * 2 1 4 4 N 1.30639 * 125.84712 * 305.31103 * 3 2 1 5 5 C 1.34019 * 109.78827 * 180.17449 * 4 3 2 6 6 C 1.48276 * 125.65607 * 179.81672 * 5 4 3 7 7 C 1.39526 * 119.96821 * 179.71655 * 6 5 4 8 8 C 1.37630 * 120.03414 * 180.02562 * 7 6 5 9 9 C 1.39790 * 119.96369 * 359.97438 * 8 7 6 10 10 C 1.47583 * 120.02945 * 179.97438 * 9 8 7 11 11 O 1.21616 * 119.99897 * 337.52248 * 10 9 8 12 12 N 1.34776 * 120.00316 * 157.24516 * 10 9 8 13 13 C 1.46500 * 120.00495 * 169.04280 * 12 10 9 14 14 C 1.36846 * 119.99715 * 349.04474 * 12 10 9 15 15 H 1.08006 * 119.99641 * 312.90796 * 14 12 10 16 16 C 1.39053 * 120.00287 * 132.90808 * 14 12 10 17 17 N 1.31363 * 120.00127 * 172.30666 * 16 14 12 18 18 Si 1.86801 * 120.00093 * 352.31058 * 16 14 12 19 19 H 1.48500 * 109.46902 * 95.59334 * 18 16 14 20 20 H 1.48499 * 109.47354 * 215.59367 * 18 16 14 21 21 H 1.48503 * 109.46870 * 335.59634 * 18 16 14 22 22 C 1.39782 * 119.94163 * 0.26179 * 9 8 7 23 23 C 1.37637 * 119.96468 * 359.48031 * 22 9 8 24 24 N 1.31561 * 108.68526 * 359.55513 * 5 4 3 25 25 N 1.34576 * 125.84939 * 125.00174 * 3 2 1 26 26 H 0.97002 * 126.73802 * 359.95684 * 25 3 2 27 27 H 1.09004 * 109.46714 * 59.99461 * 1 2 3 28 28 H 1.08991 * 109.47210 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46999 * 300.00527 * 1 2 3 30 30 H 1.09005 * 109.47360 * 239.99561 * 2 1 3 31 31 H 1.08998 * 109.46905 * 119.99852 * 2 1 3 32 32 H 1.08004 * 119.98663 * 0.02562 * 7 6 5 33 33 H 1.07994 * 120.01717 * 179.97438 * 8 7 6 34 34 H 1.09002 * 109.46958 * 89.64271 * 13 12 10 35 35 H 1.08996 * 109.46955 * 209.64537 * 13 12 10 36 36 H 1.09004 * 109.46908 * 329.64314 * 13 12 10 37 37 H 0.97002 * 119.99964 * 179.97438 * 17 16 14 38 38 H 1.07997 * 120.01826 * 179.72462 * 22 9 8 39 39 H 1.08006 * 119.98120 * 180.27918 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.7104 2.3461 -0.8641 5 6 2.3447 3.4878 -0.5638 6 6 2.2360 4.7608 -1.3164 7 6 2.9480 5.8836 -0.8933 8 6 2.8477 7.0660 -1.5905 9 6 2.0324 7.1414 -2.7235 10 6 1.9233 8.4087 -3.4719 11 8 2.1814 9.4629 -2.9234 12 7 1.5430 8.3972 -4.7649 13 6 1.2023 9.6522 -5.4395 14 6 1.4751 7.2131 -5.4476 15 1 2.2908 6.5077 -5.3877 16 6 0.3559 6.9181 -6.2183 17 7 0.3522 5.8562 -6.9916 18 14 -1.1424 8.0318 -6.1541 19 1 -1.0831 9.0063 -7.2730 20 1 -2.3744 7.2118 -6.2766 21 1 -1.1608 8.7628 -4.8615 22 6 1.3158 6.0171 -3.1435 23 6 1.4222 4.8345 -2.4473 24 7 3.0755 3.2934 0.5128 25 7 2.8851 1.9552 0.8935 26 1 3.2884 1.5047 1.6520 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.5782 5.8250 -0.0181 33 1 3.3986 7.9350 -1.2625 34 1 2.0990 10.0772 -5.8906 35 1 0.4621 9.4581 -6.2156 36 1 0.7925 10.3550 -4.7140 37 1 -0.4286 5.6502 -7.5289 38 1 0.6821 6.0752 -4.0160 39 1 0.8721 3.9644 -2.7742 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124610849.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:02 Heat of formation + Delta-G solvation = 87.153143 kcal Electronic energy + Delta-G solvation = -23435.064326 eV Core-core repulsion = 19958.951266 eV Total energy + Delta-G solvation = -3476.113060 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.10311 -39.41153 -37.57131 -35.04568 -34.48415 -32.87912 -32.04789 -31.11551 -30.29168 -29.49447 -26.68833 -25.22814 -24.53226 -23.57386 -21.90312 -20.84429 -20.31753 -19.24014 -18.00187 -17.69002 -16.33317 -15.82048 -15.76629 -15.24505 -14.73944 -14.55764 -14.39573 -14.32029 -13.59222 -13.40111 -13.06299 -12.81466 -12.72202 -12.59753 -12.49533 -12.20182 -11.86847 -11.84155 -11.61030 -11.40776 -11.27367 -10.97361 -10.54517 -10.36078 -10.24622 -10.01849 -9.96403 -9.69454 -9.23375 -8.74646 -8.32692 -8.01599 -7.75907 -6.53984 -4.24499 1.02072 1.78071 2.07137 2.52615 2.97550 3.03300 3.18294 3.22920 3.80916 3.81844 4.03622 4.37230 4.43258 4.56853 4.58228 4.85732 4.91090 5.01001 5.21162 5.49692 5.56217 5.58114 5.67362 5.77138 5.97849 6.03109 6.06437 6.14672 6.16784 6.26004 6.31397 6.46327 6.51627 6.71884 6.86879 6.99893 7.12694 7.23808 7.29972 7.56653 7.98617 8.07792 8.19054 8.83632 9.20171 9.56499 10.53213 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.018369 B = 0.004015 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.927940 B = 6972.997121 C = 8149.709699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.043 4.043 3 C 0.282 3.718 4 N -0.523 5.523 5 C 0.284 3.716 6 C -0.021 4.021 7 C -0.105 4.105 8 C -0.085 4.085 9 C -0.086 4.086 10 C 0.520 3.480 11 O -0.592 6.592 12 N -0.466 5.466 13 C 0.078 3.922 14 C -0.340 4.340 15 H 0.108 0.892 16 C 0.063 3.937 17 N -0.857 5.857 18 Si 0.885 3.115 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.260 1.260 22 C -0.069 4.069 23 C -0.092 4.092 24 N -0.311 5.311 25 N -0.488 5.488 26 H 0.437 0.563 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.278 0.722 38 H 0.175 0.825 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.418 -11.493 11.976 16.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.083 4.083 3 C 0.003 3.997 4 N -0.251 5.251 5 C 0.005 3.995 6 C -0.024 4.024 7 C -0.125 4.125 8 C -0.104 4.104 9 C -0.089 4.089 10 C 0.311 3.689 11 O -0.478 6.478 12 N -0.186 5.186 13 C -0.064 4.064 14 C -0.467 4.467 15 H 0.125 0.875 16 C -0.146 4.146 17 N -0.491 5.491 18 Si 0.712 3.288 19 H -0.199 1.199 20 H -0.213 1.213 21 H -0.184 1.184 22 C -0.087 4.087 23 C -0.112 4.112 24 N -0.140 5.140 25 N -0.206 5.206 26 H 0.282 0.718 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.102 0.898 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.192 0.808 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.644 -10.570 12.090 16.072 hybrid contribution -0.410 -0.154 0.311 0.537 sum 0.234 -10.724 12.401 16.397 Atomic orbital electron populations 1.21699 0.92677 1.02427 1.03586 1.20159 0.97841 0.86057 1.04214 1.24419 0.90518 0.97477 0.87264 1.70461 1.27694 0.99296 1.27649 1.22472 0.92067 0.93485 0.91434 1.17605 1.01033 0.87977 0.95771 1.20880 0.99697 0.91785 1.00155 1.21080 0.97789 0.97272 0.94236 1.20131 0.98379 0.94662 0.95769 1.18355 0.80966 0.88099 0.81500 1.90633 1.54667 1.32747 1.69727 1.43464 1.60632 1.06639 1.07861 1.21793 0.99803 0.87908 0.96910 1.19118 1.04661 0.95375 1.27588 0.87506 1.25535 0.97860 0.95926 0.95263 1.69643 1.30582 1.25347 1.23575 0.86758 0.81935 0.80339 0.79728 1.19945 1.21315 1.18384 1.22561 0.97297 0.90105 0.98699 1.21225 0.97819 0.98906 0.93276 1.78255 1.25424 0.93156 1.17164 1.48018 1.37743 1.09109 1.25765 0.71750 0.90693 0.91464 0.92608 0.88188 0.89848 0.85697 0.85225 0.93158 0.92778 0.92012 0.91123 0.80801 0.84926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.87 37.16 0.37 -0.68 16 2 C -0.04 -0.29 6.56 -27.88 -0.18 -0.48 16 3 C 0.28 3.28 7.50 -155.72 -1.17 2.11 16 4 N -0.52 -8.23 10.77 -8.57 -0.09 -8.33 16 5 C 0.28 4.88 7.77 -156.59 -1.22 3.66 16 6 C -0.02 -0.38 5.88 -104.81 -0.62 -1.00 16 7 C -0.10 -1.86 9.66 -39.32 -0.38 -2.24 16 8 C -0.08 -1.64 9.57 -39.22 -0.38 -2.01 16 9 C -0.09 -1.88 5.62 -104.93 -0.59 -2.47 16 10 C 0.52 12.63 7.40 -12.45 -0.09 12.54 16 11 O -0.59 -15.24 16.29 5.26 0.09 -15.16 16 12 N -0.47 -11.29 2.48 -123.37 -0.31 -11.60 16 13 C 0.08 1.71 8.83 59.85 0.53 2.24 16 14 C -0.34 -8.57 6.30 -15.01 -0.09 -8.67 16 15 H 0.11 2.90 7.52 -52.48 -0.39 2.51 16 16 C 0.06 1.57 4.74 -17.45 -0.08 1.48 16 17 N -0.86 -22.47 13.95 55.50 0.77 -21.69 16 18 Si 0.88 19.72 24.70 -169.99 -4.20 15.52 16 19 H -0.27 -5.88 6.94 56.52 0.39 -5.49 16 20 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.26 -5.87 6.80 56.52 0.38 -5.48 16 22 C -0.07 -1.46 8.20 -39.22 -0.32 -1.79 16 23 C -0.09 -1.77 9.67 -39.32 -0.38 -2.15 16 24 N -0.31 -4.82 12.42 32.09 0.40 -4.42 16 25 N -0.49 -5.45 7.44 32.61 0.24 -5.20 16 26 H 0.44 2.98 8.96 -182.35 -1.63 1.35 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.13 1.97 7.82 -52.48 -0.41 1.56 16 33 H 0.13 2.39 7.80 -52.49 -0.41 1.98 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 1.15 3.52 -51.93 -0.18 0.97 16 36 H 0.06 1.30 7.61 -51.93 -0.40 0.90 16 37 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 38 H 0.18 4.03 4.75 -52.49 -0.25 3.79 16 39 H 0.13 2.45 7.82 -52.48 -0.41 2.04 16 LS Contribution 329.44 15.07 4.96 4.96 Total: -1.00 -31.30 329.44 -8.52 -39.82 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.78 Total: 5.55 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -4.60 Total: 0.56 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: 1.02 Total: -51.25 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: 0.09 Total: -15.16 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.20 Total: 15.52 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.30 -8.52 -39.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124610849.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.975 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds