Wall clock time and date at job start Fri Apr 10 2020 20:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30201 * 126.20679 * 2 1 4 4 N 1.39801 * 110.13118 * 180.02562 * 3 2 1 5 5 C 1.46500 * 125.33837 * 180.02562 * 4 3 2 6 6 C 1.36638 * 109.31781 * 359.97438 * 4 3 2 7 7 N 1.32948 * 133.25387 * 179.97438 * 6 4 3 8 8 C 1.31180 * 121.85223 * 179.70466 * 7 6 4 9 9 C 1.40245 * 121.36262 * 0.58757 * 8 7 6 10 10 C 1.47592 * 120.41363 * 179.69781 * 9 8 7 11 11 O 1.21601 * 119.99927 * 148.16008 * 10 9 8 12 12 N 1.34776 * 119.99776 * 328.15467 * 10 9 8 13 13 C 1.36910 * 120.00008 * 6.23638 * 12 10 9 14 14 H 1.07998 * 120.00129 * 308.73634 * 13 12 10 15 15 C 1.39024 * 119.99905 * 128.74003 * 13 12 10 16 16 N 1.31375 * 120.00371 * 342.95309 * 15 13 12 17 17 Si 1.86797 * 119.99794 * 162.94935 * 15 13 12 18 18 H 1.48502 * 109.47187 * 180.02562 * 17 15 13 19 19 H 1.48505 * 109.47600 * 299.99881 * 17 15 13 20 20 H 1.48504 * 109.47371 * 60.00078 * 17 15 13 21 21 C 1.46496 * 119.99713 * 186.22897 * 12 10 9 22 22 C 1.53006 * 117.49592 * 181.50044 * 21 12 10 23 23 C 1.52998 * 59.99858 * 252.51236 * 22 21 12 24 24 C 1.39567 * 119.16888 * 359.43028 * 9 8 7 25 25 C 1.39654 * 117.94556 * 0.26938 * 24 9 8 26 26 H 1.09007 * 109.46755 * 269.95606 * 1 2 3 27 27 H 1.08993 * 109.47337 * 29.95649 * 1 2 3 28 28 H 1.08996 * 109.47380 * 149.95935 * 1 2 3 29 29 H 1.09006 * 109.46759 * 270.00467 * 5 4 3 30 30 H 1.08999 * 109.47148 * 29.99425 * 5 4 3 31 31 H 1.08993 * 109.47235 * 149.99963 * 5 4 3 32 32 H 1.07996 * 119.32016 * 180.31442 * 8 7 6 33 33 H 0.96994 * 120.00321 * 175.07324 * 16 15 13 34 34 H 1.08993 * 115.55571 * 327.21119 * 21 12 10 35 35 H 1.08998 * 117.50249 * 0.02562 * 22 21 12 36 36 H 1.09004 * 117.49637 * 145.02717 * 22 21 12 37 37 H 1.09002 * 117.50635 * 252.50855 * 23 22 21 38 38 H 1.09002 * 117.51577 * 107.48160 * 23 22 21 39 39 H 1.08003 * 121.03018 * 180.29671 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0506 0.0000 4 7 3.6195 0.6635 -0.0006 5 6 4.7646 1.5772 -0.0002 6 6 3.6967 -0.7007 -0.0004 7 7 4.7150 -1.5555 -0.0012 8 6 4.5288 -2.8540 0.0050 9 6 3.2399 -3.4066 0.0005 10 6 3.0547 -4.8709 0.0008 11 8 2.0887 -5.3614 0.5531 12 7 3.9561 -5.6643 -0.6110 13 6 5.1069 -5.1260 -1.1213 14 1 5.0576 -4.2717 -1.7801 15 6 6.3389 -5.6793 -0.7915 16 7 6.4431 -6.4805 0.2445 17 14 7.8462 -5.2837 -1.8215 18 1 9.0260 -5.9939 -1.2656 19 1 7.6187 -5.7237 -3.2215 20 1 8.0924 -3.8194 -1.7966 21 6 3.7047 -7.1026 -0.7298 22 6 4.7821 -7.9548 -1.4036 23 6 3.4687 -7.6649 -2.1330 24 6 2.1345 -2.5546 0.0013 25 6 2.3693 -1.1779 0.0008 26 1 -0.3633 -0.0008 1.0278 27 1 -0.3633 0.8903 -0.5131 28 1 -0.3634 -0.8896 -0.5144 29 1 5.0483 1.8045 -1.0279 30 1 4.4937 2.4991 0.5142 31 1 5.6038 1.1078 0.5131 32 1 5.3859 -3.5111 0.0092 33 1 7.2856 -6.9228 0.4328 34 1 3.1483 -7.5521 0.0926 35 1 5.6781 -7.4454 -1.7581 36 1 4.9347 -8.9653 -1.0244 37 1 2.7573 -8.4846 -2.2337 38 1 3.5002 -6.9646 -2.9677 39 1 1.1285 -2.9477 0.0027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299200607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:59 Heat of formation + Delta-G solvation = 110.655887 kcal Electronic energy + Delta-G solvation = -24300.048405 eV Core-core repulsion = 20824.954501 eV Total energy + Delta-G solvation = -3475.093905 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.21635 -39.11218 -37.33137 -36.09426 -34.11721 -33.34448 -31.64652 -31.22324 -29.70752 -29.35749 -25.67032 -25.37820 -23.39637 -23.03376 -21.38827 -20.88905 -19.68330 -19.39126 -17.60443 -17.02015 -16.91541 -15.67709 -15.40131 -15.24678 -15.10404 -14.39057 -13.96161 -13.54711 -13.47415 -13.40895 -13.09020 -12.90071 -12.80891 -12.61546 -12.41638 -12.18297 -12.11656 -11.55520 -11.49531 -11.26872 -10.94803 -10.75920 -10.48933 -10.45477 -9.97747 -9.82221 -9.41399 -9.27441 -8.74646 -8.57648 -8.53872 -7.82411 -7.39876 -6.50561 -4.37505 1.19224 1.52059 2.38072 2.64792 3.06651 3.13851 3.15887 3.72844 3.95099 4.30572 4.36010 4.48611 4.62396 4.73863 4.83360 5.12241 5.21231 5.31145 5.34139 5.49975 5.54743 5.56761 5.61088 5.73848 5.84970 5.94163 6.02760 6.07965 6.12953 6.28780 6.44548 6.53560 6.69245 6.81329 6.90885 6.99783 7.19749 7.23839 7.30567 7.71548 7.91108 8.17427 8.41011 8.84918 9.30485 9.76158 10.46930 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.017115 B = 0.005297 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.556437 B = 5285.117786 C = 6566.536522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.112 3.888 3 N -0.257 5.257 4 N -0.401 5.401 5 C 0.117 3.883 6 C 0.319 3.681 7 N -0.522 5.522 8 C 0.216 3.784 9 C -0.188 4.188 10 C 0.539 3.461 11 O -0.594 6.594 12 N -0.408 5.408 13 C -0.365 4.365 14 H 0.088 0.912 15 C 0.061 3.939 16 N -0.832 5.832 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.269 1.269 20 H -0.264 1.264 21 C 0.109 3.891 22 C -0.149 4.149 23 C -0.215 4.215 24 C 0.040 3.960 25 C -0.242 4.242 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.211 0.789 33 H 0.274 0.726 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.647 8.240 -2.090 9.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.067 4.067 3 N -0.071 5.071 4 N -0.192 5.192 5 C -0.024 4.024 6 C 0.081 3.919 7 N -0.238 5.238 8 C 0.049 3.951 9 C -0.194 4.194 10 C 0.328 3.672 11 O -0.479 6.479 12 N -0.125 5.125 13 C -0.492 4.492 14 H 0.106 0.894 15 C -0.150 4.150 16 N -0.463 5.463 17 Si 0.721 3.279 18 H -0.205 1.205 19 H -0.194 1.194 20 H -0.188 1.188 21 C 0.004 3.996 22 C -0.187 4.187 23 C -0.254 4.254 24 C 0.011 3.989 25 C -0.252 4.252 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.227 0.773 33 H 0.085 0.915 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.919 9.718 -1.655 10.281 hybrid contribution 0.292 -1.024 -0.600 1.222 sum -2.627 8.694 -2.255 9.358 Atomic orbital electron populations 1.20246 0.85638 1.03781 1.03501 1.23429 0.96514 0.88642 0.98077 1.76513 0.86634 1.23056 1.20938 1.47827 1.04083 1.01827 1.65510 1.21701 0.85065 0.92873 1.02797 1.19320 0.90904 0.85977 0.95686 1.67069 1.32306 1.03651 1.20757 1.24664 0.98754 0.88003 0.83714 1.20758 0.94292 0.95408 1.08976 1.17951 0.84181 0.85445 0.79641 1.90629 1.33597 1.75990 1.47677 1.42541 1.17066 1.04046 1.48832 1.19193 0.82806 1.17932 1.29279 0.89442 1.25460 0.98769 0.96425 0.94315 1.70024 1.27489 1.27013 1.21820 0.86485 0.80991 0.79833 0.80582 1.20473 1.19396 1.18848 1.21171 1.01669 0.83260 0.93520 1.23082 0.93788 0.99035 1.02753 1.23348 1.00993 1.03298 0.97738 1.21031 0.99443 0.89370 0.89088 1.20208 0.93599 0.94416 1.16994 0.89876 0.90421 0.89836 0.91595 0.89985 0.89295 0.77345 0.91534 0.87584 0.87282 0.90509 0.90225 0.89454 0.84189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.48 36.01 0.38 -0.39 16 2 C 0.11 1.72 7.44 -80.18 -0.60 1.13 16 3 N -0.26 -4.18 12.39 34.84 0.43 -3.74 16 4 N -0.40 -6.72 4.03 -67.17 -0.27 -6.99 16 5 C 0.12 1.44 11.43 59.85 0.68 2.12 16 6 C 0.32 6.11 7.96 -156.07 -1.24 4.87 16 7 N -0.52 -10.62 10.37 -12.01 -0.12 -10.75 16 8 C 0.22 4.59 9.09 -17.08 -0.16 4.43 16 9 C -0.19 -4.04 5.60 -104.83 -0.59 -4.63 16 10 C 0.54 12.99 7.41 -12.44 -0.09 12.90 16 11 O -0.59 -15.41 16.57 5.28 0.09 -15.32 16 12 N -0.41 -9.75 2.72 -108.88 -0.30 -10.05 16 13 C -0.36 -8.48 5.28 -14.99 -0.08 -8.56 16 14 H 0.09 2.03 6.77 -52.49 -0.36 1.67 16 15 C 0.06 1.39 2.75 -17.46 -0.05 1.34 16 16 N -0.83 -20.10 11.74 55.50 0.65 -19.45 16 17 Si 0.90 17.95 29.32 -169.99 -4.98 12.97 16 18 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 19 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 20 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 21 C 0.11 2.46 5.64 -67.93 -0.38 2.08 16 22 C -0.15 -3.07 8.39 -26.73 -0.22 -3.30 16 23 C -0.21 -4.18 10.38 -26.73 -0.28 -4.46 16 24 C 0.04 0.75 9.78 -38.56 -0.38 0.38 16 25 C -0.24 -4.41 6.33 -105.20 -0.67 -5.07 16 26 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.21 4.68 5.01 -52.49 -0.26 4.42 16 33 H 0.27 6.30 8.31 -40.82 -0.34 5.96 16 34 H 0.11 2.48 7.77 -51.93 -0.40 2.08 16 35 H 0.11 2.41 4.98 -51.93 -0.26 2.15 16 36 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 37 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 39 H 0.14 2.39 8.00 -52.48 -0.42 1.97 16 LS Contribution 330.56 15.07 4.98 4.98 Total: -1.00 -28.93 330.56 -7.83 -36.76 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -4.64 Total: 8.75 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -3.67 Total: 2.84 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: 0.39 Total: -50.98 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.09 Total: -15.32 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -4.98 Total: 12.97 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.93 -7.83 -36.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299200607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.417 kcal (2) G-P(sol) polarization free energy of solvation -28.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds