Wall clock time and date at job start Fri Apr 10 2020 20:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 119.99862 * 2 1 4 4 H 1.48508 * 109.46755 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46890 * 299.99399 * 3 2 1 6 6 H 1.48492 * 109.47687 * 59.99816 * 3 2 1 7 7 C 1.38811 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00247 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00452 * 0.02562 * 7 2 1 10 10 C 1.47665 * 134.46417 * 179.97438 * 9 7 2 11 11 C 1.53509 * 85.98123 * 204.31368 * 10 9 7 12 12 C 1.47671 * 134.45007 * 359.97438 * 9 7 2 13 13 C 1.52676 * 113.57057 * 91.01722 * 11 10 9 14 14 C 1.53332 * 109.11206 * 73.80622 * 13 11 10 15 15 N 1.46879 * 108.76149 * 52.40363 * 14 13 11 16 16 C 1.34783 * 120.46473 * 124.49128 * 15 14 13 17 17 O 1.21280 * 119.99771 * 179.97438 * 16 15 14 18 18 C 1.50696 * 120.00178 * 359.97229 * 16 15 14 19 19 H 1.09006 * 115.54871 * 34.33397 * 18 16 15 20 20 C 1.53003 * 117.50121 * 180.02562 * 18 16 15 21 21 C 1.53002 * 117.50128 * 248.62788 * 18 16 15 22 22 F 1.39896 * 117.49834 * 0.02562 * 21 18 16 23 23 F 1.39904 * 117.49642 * 145.02116 * 21 18 16 24 24 C 1.46886 * 119.06688 * 304.46349 * 15 14 13 25 25 C 1.52668 * 113.56257 * 222.22598 * 11 10 9 26 26 H 0.97000 * 120.00403 * 0.02562 * 1 2 3 27 27 H 1.08994 * 113.79208 * 90.04207 * 10 9 7 28 28 H 1.09001 * 113.88935 * 318.59695 * 10 9 7 29 29 H 1.08996 * 113.79658 * 41.41827 * 12 9 7 30 30 H 1.08999 * 113.79008 * 269.94429 * 12 9 7 31 31 H 1.08998 * 109.53228 * 193.69529 * 13 11 10 32 32 H 1.09005 * 109.52937 * 313.91640 * 13 11 10 33 33 H 1.08994 * 109.59430 * 172.18969 * 14 13 11 34 34 H 1.09006 * 109.58859 * 292.62201 * 14 13 11 35 35 H 1.08997 * 117.49983 * 214.97862 * 20 18 16 36 36 H 1.09001 * 117.49611 * 359.97438 * 20 18 16 37 37 H 1.08999 * 109.59593 * 295.76319 * 24 15 14 38 38 H 1.09002 * 109.59396 * 175.32250 * 24 15 14 39 39 H 1.09000 * 109.52683 * 46.09480 * 25 11 10 40 40 H 1.08999 * 109.52914 * 166.23436 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 1.7212 -3.8108 0.0005 11 6 0.3479 -4.0810 -0.6300 12 6 -0.1044 -2.7567 0.0005 13 6 0.3618 -4.0584 -2.1565 14 6 1.0387 -5.3343 -2.6713 15 7 0.3928 -6.4965 -2.0472 16 6 -0.1288 -7.4789 -2.8084 17 8 -0.6598 -8.4350 -2.2841 18 6 -0.0523 -7.3893 -4.3107 19 1 0.8452 -6.9155 -4.7083 20 6 -0.6633 -8.5359 -5.1189 21 6 -1.3614 -7.1756 -5.0733 22 9 -2.5378 -7.0778 -4.3225 23 9 -1.3151 -6.3868 -6.2278 24 6 0.3240 -6.5733 -0.5820 25 6 -0.3580 -5.3058 -0.0535 26 1 -0.4851 0.8400 -0.0004 27 1 1.8382 -4.2346 0.9978 28 1 2.5596 -4.0358 -0.6586 29 1 -0.7169 -2.1422 -0.6592 30 1 -0.5299 -2.8673 0.9979 31 1 -0.6613 -4.0128 -2.5296 32 1 0.9165 -3.1863 -2.5030 33 1 0.9307 -5.3939 -3.7542 34 1 2.0963 -5.3187 -2.4077 35 1 -0.1678 -8.8164 -6.0483 36 1 -1.1202 -9.3552 -4.5638 37 1 1.3314 -6.6444 -0.1719 38 1 -0.2549 -7.4491 -0.2887 39 1 -0.2946 -5.2844 1.0345 40 1 -1.4047 -5.2999 -0.3576 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035702097.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:48:45 Heat of formation + Delta-G solvation = -41.045270 kcal Electronic energy + Delta-G solvation = -25301.597234 eV Core-core repulsion = 21369.235887 eV Total energy + Delta-G solvation = -3932.361347 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.139 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.92638 -47.59322 -40.50191 -38.93548 -36.13334 -35.60188 -32.55428 -31.19723 -30.39308 -27.09255 -25.36906 -24.89496 -23.37838 -22.88868 -22.76181 -21.12488 -19.56197 -18.60224 -17.65655 -16.95319 -16.73689 -16.61307 -16.22187 -15.58238 -14.99324 -14.86607 -14.68644 -14.23279 -14.03682 -13.86970 -13.79150 -13.75212 -13.60186 -13.11199 -12.80552 -12.43367 -12.25161 -12.18062 -11.72386 -11.50502 -11.09532 -11.07992 -10.90802 -10.87653 -10.54384 -10.36448 -10.25295 -9.89089 -9.73142 -9.57341 -9.36640 -8.80202 -8.53768 -6.86707 -5.76912 -3.08900 1.96332 2.65705 2.83271 3.17525 3.37554 3.42964 3.45576 3.86250 3.97682 4.29022 4.44840 4.45735 4.92358 5.00207 5.03135 5.12541 5.22617 5.28811 5.34636 5.44272 5.46172 5.58321 5.59903 5.78498 5.83653 5.93511 6.11168 6.23895 6.31748 6.43799 6.55686 6.59411 6.77606 6.79925 7.23727 7.31697 7.36363 7.58243 7.98460 7.99601 9.04778 9.71044 10.61236 11.40027 Molecular weight = 300.14amu Principal moments of inertia in cm(-1) A = 0.023061 B = 0.003796 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.883029 B = 7375.351328 C = 7946.853261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.222 4.222 8 H 0.079 0.921 9 N -0.609 5.609 10 C 0.127 3.873 11 C -0.110 4.110 12 C 0.173 3.827 13 C -0.097 4.097 14 C 0.104 3.896 15 N -0.594 5.594 16 C 0.544 3.456 17 O -0.536 6.536 18 C -0.195 4.195 19 H 0.151 0.849 20 C -0.142 4.142 21 C 0.224 3.776 22 F -0.149 7.149 23 F -0.154 7.154 24 C 0.115 3.885 25 C -0.118 4.118 26 H 0.253 0.747 27 H 0.031 0.969 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.025 0.975 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.147 -16.475 -9.571 19.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.350 4.350 8 H 0.096 0.904 9 N -0.335 5.335 10 C 0.001 3.999 11 C -0.111 4.111 12 C 0.048 3.952 13 C -0.135 4.135 14 C -0.018 4.018 15 N -0.326 5.326 16 C 0.330 3.670 17 O -0.414 6.414 18 C -0.217 4.217 19 H 0.168 0.832 20 C -0.180 4.180 21 C 0.187 3.813 22 F -0.130 7.130 23 F -0.135 7.135 24 C -0.007 4.007 25 C -0.157 4.157 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.043 0.957 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.113 -16.571 -9.281 18.993 hybrid contribution 0.410 1.389 0.127 1.454 sum 0.298 -15.181 -9.154 17.730 Atomic orbital electron populations 1.69825 1.04984 1.25158 1.56789 1.24755 0.95611 0.97413 1.02595 0.86097 0.78740 0.83956 0.77270 1.20521 1.21740 1.21809 1.19055 0.90227 0.82097 1.43602 0.90368 1.45980 1.02332 0.99151 1.86034 1.22582 0.94237 0.86639 0.96464 1.22386 0.98089 0.95774 0.94857 1.22228 0.88068 0.88281 0.96621 1.21491 1.00932 0.96489 0.94629 1.21963 0.97356 0.85228 0.97263 1.48018 1.56647 1.20654 1.07307 1.19107 0.78464 0.82660 0.86738 1.90693 1.44361 1.32522 1.73838 1.23770 0.98801 1.04813 0.94350 0.83160 1.24294 0.99195 0.92055 1.02472 1.19623 0.82314 0.96792 0.82610 1.93092 1.48199 1.96645 1.75019 1.93069 1.96374 1.75916 1.48107 1.21688 1.01442 0.99546 0.77980 1.21831 0.99683 0.93624 1.00549 0.93734 0.95113 0.94212 0.90965 0.95696 0.91971 0.89175 0.90260 0.90639 0.85061 0.84688 0.91151 0.89304 0.90572 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.97 11.39 55.49 0.63 -26.34 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 7 C -0.22 -6.08 10.70 -15.06 -0.16 -6.24 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.61 -14.99 3.53 -179.76 -0.64 -15.62 16 10 C 0.13 2.43 7.72 -3.15 -0.02 2.41 16 11 C -0.11 -1.91 0.77 -154.42 -0.12 -2.03 16 12 C 0.17 3.95 6.64 -3.16 -0.02 3.93 16 13 C -0.10 -1.53 5.22 -26.73 -0.14 -1.67 16 14 C 0.10 1.27 6.18 -3.66 -0.02 1.25 16 15 N -0.59 -7.73 2.94 -172.66 -0.51 -8.24 16 16 C 0.54 7.20 7.11 -10.98 -0.08 7.12 16 17 O -0.54 -8.58 15.65 5.56 0.09 -8.49 16 18 C -0.20 -1.93 4.96 -91.77 -0.46 -2.38 16 19 H 0.15 1.10 6.77 -51.93 -0.35 0.74 16 20 C -0.14 -1.14 10.01 -26.75 -0.27 -1.41 16 21 C 0.22 2.44 5.19 -26.75 -0.14 2.30 16 22 F -0.15 -2.06 17.13 2.25 0.04 -2.02 16 23 F -0.15 -1.72 17.60 2.25 0.04 -1.68 16 24 C 0.12 1.52 6.31 -3.66 -0.02 1.50 16 25 C -0.12 -1.74 5.26 -26.73 -0.14 -1.88 16 26 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16 28 H 0.04 0.72 7.41 -51.93 -0.38 0.33 16 29 H 0.07 1.84 7.12 -51.93 -0.37 1.47 16 30 H 0.03 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.09 1.62 8.01 -51.93 -0.42 1.21 16 33 H 0.08 0.79 5.60 -51.93 -0.29 0.50 16 34 H 0.08 0.88 7.49 -51.93 -0.39 0.49 16 35 H 0.13 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.14 1.16 7.67 -51.93 -0.40 0.76 16 37 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 38 H 0.09 1.20 6.98 -51.93 -0.36 0.84 16 39 H 0.08 1.09 8.12 -51.93 -0.42 0.66 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 330.66 15.07 4.98 4.98 Total: -1.00 -32.21 330.66 -7.53 -39.74 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -5.46 Total: -1.78 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -1.69 Total: 2.59 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.51 Total: -50.21 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.49 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.08 Total: -3.70 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.21 -7.53 -39.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035702097.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.305 kcal (2) G-P(sol) polarization free energy of solvation -32.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds