Wall clock time and date at job start Fri Apr 10 2020 20:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00196 * 2 1 4 4 H 1.48494 * 109.47186 * 240.00335 * 3 2 1 5 5 H 1.48497 * 109.47205 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47404 * 120.00439 * 3 2 1 7 7 C 1.38809 * 119.99598 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00109 * 180.02562 * 7 2 1 9 9 N 1.36947 * 120.00280 * 359.97438 * 7 2 1 10 10 C 1.47066 * 136.05404 * 359.95098 * 9 7 2 11 11 C 1.53503 * 87.98315 * 207.15488 * 10 9 7 12 12 C 1.47060 * 136.05526 * 180.02562 * 9 7 2 13 13 H 1.09007 * 113.46532 * 267.67608 * 12 9 7 14 14 C 1.52992 * 113.47178 * 38.06455 * 12 9 7 15 15 N 1.46505 * 109.46988 * 285.49069 * 14 12 9 16 16 C 1.34779 * 119.99907 * 179.97438 * 15 14 12 17 17 O 1.21594 * 119.99907 * 0.02562 * 16 15 14 18 18 C 1.47576 * 120.00058 * 180.02562 * 16 15 14 19 19 C 1.40085 * 120.35923 * 359.90281 * 18 16 15 20 20 N 1.31160 * 121.12303 * 179.97438 * 19 18 16 21 21 C 1.33370 * 121.67529 * 0.07830 * 20 19 18 22 22 C 1.41856 * 133.16446 * 179.97438 * 21 20 19 23 23 C 1.34460 * 107.95099 * 180.02562 * 22 21 20 24 24 N 1.36539 * 109.71863 * 359.97438 * 23 22 21 25 25 H 0.96994 * 125.59758 * 179.97438 * 24 23 22 26 26 C 1.37853 * 108.80267 * 0.02562 * 24 23 22 27 27 C 1.38735 * 133.56847 * 180.02562 * 26 24 23 28 28 H 0.97000 * 119.99960 * 359.97438 * 1 2 3 29 29 H 1.09001 * 113.46948 * 321.93608 * 10 9 7 30 30 H 1.09001 * 113.46226 * 92.37948 * 10 9 7 31 31 H 1.08998 * 114.20667 * 220.35183 * 11 10 9 32 32 H 1.08999 * 114.20361 * 87.52048 * 11 10 9 33 33 H 1.09002 * 109.47423 * 165.49763 * 14 12 9 34 34 H 1.08991 * 109.47504 * 45.49434 * 14 12 9 35 35 H 0.96998 * 119.99825 * 0.02562 * 15 14 12 36 36 H 1.08001 * 119.44146 * 0.06582 * 19 18 16 37 37 H 1.07996 * 126.02223 * 359.97438 * 22 21 20 38 38 H 1.07996 * 125.13657 * 180.02562 * 23 22 21 39 39 H 1.08003 * 120.90616 * 359.70764 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.0879 -2.7948 0.0008 11 6 0.3423 -4.0921 0.6996 12 6 1.6798 -3.8154 -0.0005 13 1 1.7450 -4.2465 -0.9996 14 6 2.8989 -4.1406 0.8647 15 7 4.1153 -3.6903 0.1834 16 6 5.3187 -3.8727 0.7623 17 8 5.3948 -4.4114 1.8498 18 6 6.5439 -3.4187 0.0764 19 6 6.4651 -2.7991 -1.1775 20 7 7.5443 -2.3893 -1.8002 21 6 8.7591 -2.5442 -1.2720 22 6 10.0618 -2.2034 -1.7180 23 6 10.9381 -2.5963 -0.7768 24 7 10.2688 -3.1767 0.2621 25 1 10.6766 -3.5417 1.0629 26 6 8.9184 -3.1599 -0.0145 27 6 7.7964 -3.6034 0.6706 28 1 -0.4850 0.8400 0.0004 29 1 -0.7221 -2.1588 0.6184 30 1 -0.4946 -2.9541 -0.9979 31 1 -0.1730 -4.9839 0.3429 32 1 0.3841 -4.0215 1.7865 33 1 2.9516 -5.2169 1.0285 34 1 2.8100 -3.6310 1.8240 35 1 4.0545 -3.2603 -0.6839 36 1 5.4992 -2.6550 -1.6387 37 1 10.3068 -1.7152 -2.6496 38 1 12.0092 -2.4709 -0.8337 39 1 7.8881 -4.0824 1.6342 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038386813.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:48:52 Heat of formation + Delta-G solvation = 97.782664 kcal Electronic energy + Delta-G solvation = -23476.470164 eV Core-core repulsion = 20000.818035 eV Total energy + Delta-G solvation = -3475.652129 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.89686 -39.61842 -38.21469 -37.44984 -34.15863 -32.98873 -32.20985 -30.33422 -29.99765 -28.02016 -27.42815 -23.98821 -23.62636 -23.46033 -21.81948 -21.07973 -20.42360 -19.28083 -18.53751 -17.43451 -16.75042 -16.53396 -16.01738 -15.41150 -15.13214 -15.10214 -14.48544 -14.37321 -13.93454 -13.63415 -13.42272 -13.24673 -13.02847 -12.93908 -12.55767 -12.53949 -11.89543 -11.52119 -11.09877 -10.97141 -10.75089 -10.58061 -10.46017 -10.17190 -9.87967 -9.83284 -9.38432 -9.18467 -8.79774 -8.71402 -8.57054 -8.28918 -6.89491 -5.76041 -3.08835 0.50821 1.18717 2.27820 2.67392 3.16791 3.41316 3.45998 3.46186 3.50217 3.96431 4.11395 4.44487 4.49807 4.74058 4.84556 4.87508 5.03947 5.16043 5.24282 5.39124 5.46475 5.56658 5.71626 5.75839 5.91910 5.97141 6.10012 6.15886 6.22854 6.32864 6.40574 6.59813 6.69086 6.71056 6.85334 7.08264 7.23116 7.39629 7.58316 7.83077 7.92775 7.98301 8.47369 9.03538 9.71227 10.63243 11.41000 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.015818 B = 0.004118 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.751264 B = 6797.272788 C = 8040.242576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.906 3.094 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.216 4.216 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.152 3.848 11 C -0.161 4.161 12 C 0.126 3.874 13 H 0.050 0.950 14 C 0.122 3.878 15 N -0.704 5.704 16 C 0.563 3.437 17 O -0.550 6.550 18 C -0.170 4.170 19 C 0.136 3.864 20 N -0.454 5.454 21 C 0.111 3.889 22 C -0.198 4.198 23 C 0.076 3.924 24 N -0.582 5.582 25 H 0.421 0.579 26 C 0.023 3.977 27 C -0.016 4.016 28 H 0.254 0.746 29 H 0.072 0.928 30 H 0.025 0.975 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.403 0.597 36 H 0.164 0.836 37 H 0.154 0.846 38 H 0.180 0.820 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.959 -8.902 -1.127 20.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.736 3.264 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.343 4.343 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.026 3.974 11 C -0.200 4.200 12 C 0.018 3.982 13 H 0.067 0.933 14 C -0.003 4.003 15 N -0.354 5.354 16 C 0.349 3.651 17 O -0.430 6.430 18 C -0.177 4.177 19 C -0.034 4.034 20 N -0.161 5.161 21 C -0.020 4.020 22 C -0.224 4.224 23 C -0.055 4.055 24 N -0.185 5.185 25 H 0.259 0.741 26 C -0.086 4.086 27 C -0.045 4.045 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.239 0.761 36 H 0.181 0.819 37 H 0.171 0.829 38 H 0.197 0.803 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 18.075 -8.520 -1.085 20.012 hybrid contribution 0.706 0.692 0.632 1.174 sum 18.781 -7.828 -0.454 20.352 Atomic orbital electron populations 1.69816 1.04974 1.25411 1.56275 1.24750 0.95606 0.97387 1.02409 0.86290 0.78581 0.83436 0.78062 1.20989 1.21537 1.21165 1.18797 0.89974 0.81342 1.44191 0.90235 1.45669 1.02610 0.98520 1.85914 1.22029 0.88702 0.90164 0.96513 1.23660 0.96854 0.99082 1.00381 1.22431 0.91974 0.87853 0.95907 0.93315 1.21867 0.82805 0.98338 0.97265 1.45884 1.05775 1.60341 1.23426 1.17841 0.83123 0.79133 0.85043 1.90742 1.87094 1.44352 1.20773 1.20700 0.93860 1.05490 0.97637 1.22878 0.97063 0.92761 0.90697 1.67213 0.97090 1.17330 1.34509 1.19219 0.92754 0.98681 0.91322 1.20595 0.89271 1.10212 1.02309 1.22032 0.98395 0.97620 0.87463 1.41721 1.04464 1.52478 1.19824 0.74090 1.19009 0.85112 1.05921 0.98517 1.20511 0.88589 0.96163 0.99238 0.93632 0.90992 0.95704 0.92316 0.90197 0.92029 0.90859 0.76062 0.81916 0.82869 0.80280 0.83801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.92 11.51 55.49 0.64 -26.28 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 3 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.22 -5.76 10.55 -15.06 -0.16 -5.92 16 8 H 0.08 2.03 7.50 -52.49 -0.39 1.64 16 9 N -0.60 -14.49 3.65 -176.98 -0.65 -15.13 16 10 C 0.15 3.43 7.39 -8.50 -0.06 3.37 16 11 C -0.16 -2.88 8.03 -26.22 -0.21 -3.09 16 12 C 0.13 2.39 4.10 -72.40 -0.30 2.09 16 13 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 14 C 0.12 2.17 5.52 -4.04 -0.02 2.15 16 15 N -0.70 -12.02 5.28 -61.34 -0.32 -12.35 16 16 C 0.56 9.78 7.77 -12.45 -0.10 9.68 16 17 O -0.55 -10.94 16.40 5.28 0.09 -10.85 16 18 C -0.17 -2.61 5.89 -104.79 -0.62 -3.22 16 19 C 0.14 2.05 10.69 -17.15 -0.18 1.87 16 20 N -0.45 -7.10 10.40 -10.70 -0.11 -7.22 16 21 C 0.11 1.54 7.32 -84.80 -0.62 0.92 16 22 C -0.20 -2.04 10.84 -39.53 -0.43 -2.47 16 23 C 0.08 0.54 11.82 -16.79 -0.20 0.34 16 24 N -0.58 -4.71 6.14 -10.66 -0.07 -4.77 16 25 H 0.42 2.01 8.96 -40.82 -0.37 1.64 16 26 C 0.02 0.29 7.27 -83.96 -0.61 -0.32 16 27 C -0.02 -0.22 9.72 -38.79 -0.38 -0.59 16 28 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.07 1.83 7.12 -51.93 -0.37 1.46 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.43 8.12 -51.93 -0.42 1.01 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.40 6.53 6.41 -40.82 -0.26 6.27 16 36 H 0.16 2.23 6.39 -52.49 -0.34 1.89 16 37 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.18 0.47 8.06 -52.49 -0.42 0.05 16 39 H 0.14 1.78 7.72 -52.48 -0.41 1.38 16 LS Contribution 334.03 15.07 5.03 5.03 Total: -1.00 -34.67 334.03 -9.04 -43.70 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -4.65 Total: 6.08 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -3.98 Total: 4.57 kcal Atomic # 7 Polarization: -65.24 SS G_CDS: -0.51 Total: -65.75 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.67 -9.04 -43.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038386813.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.488 kcal (2) G-P(sol) polarization free energy of solvation -34.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds