Wall clock time and date at job start Fri Apr 10 2020 20:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99821 * 2 1 4 4 H 1.48501 * 109.46888 * 239.99903 * 3 2 1 5 5 H 1.48491 * 109.47461 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46934 * 120.00273 * 3 2 1 7 7 C 1.38809 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99848 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99799 * 0.02562 * 7 2 1 10 10 C 1.47060 * 136.06048 * 359.94873 * 9 7 2 11 11 C 1.53502 * 87.98821 * 207.15747 * 10 9 7 12 12 C 1.47066 * 136.05349 * 179.97438 * 9 7 2 13 13 H 1.09000 * 113.46827 * 267.61868 * 12 9 7 14 14 C 1.53001 * 113.46961 * 38.06692 * 12 9 7 15 15 N 1.46498 * 109.46763 * 285.48958 * 14 12 9 16 16 C 1.34783 * 120.00109 * 179.97438 * 15 14 12 17 17 O 1.21646 * 119.99515 * 0.02562 * 16 15 14 18 18 C 1.47063 * 120.00049 * 180.02562 * 16 15 14 19 19 C 1.35908 * 125.42089 * 180.02562 * 18 16 15 20 20 C 1.41434 * 107.67310 * 179.97438 * 19 18 16 21 21 C 1.39841 * 134.34840 * 180.02562 * 20 19 18 22 22 N 1.31558 * 120.03653 * 179.97438 * 21 20 19 23 23 C 1.32363 * 122.32825 * 359.97438 * 22 21 20 24 24 C 1.36636 * 121.63956 * 359.97438 * 23 22 21 25 25 C 1.39430 * 119.01618 * 0.06419 * 24 23 22 26 26 N 1.36884 * 134.32739 * 180.34528 * 25 24 23 27 27 H 0.96996 * 125.58750 * 359.86902 * 26 25 24 28 28 H 0.97003 * 119.99474 * 0.02562 * 1 2 3 29 29 H 1.09007 * 113.46761 * 321.93681 * 10 9 7 30 30 H 1.09003 * 113.46830 * 92.37649 * 10 9 7 31 31 H 1.08997 * 114.20475 * 220.34600 * 11 10 9 32 32 H 1.08995 * 114.20623 * 87.51550 * 11 10 9 33 33 H 1.08998 * 109.47322 * 45.48839 * 14 12 9 34 34 H 1.09005 * 109.47186 * 165.49224 * 14 12 9 35 35 H 0.97002 * 120.00400 * 0.02562 * 15 14 12 36 36 H 1.08005 * 126.16469 * 0.02562 * 19 18 16 37 37 H 1.08001 * 119.98474 * 359.97438 * 21 20 19 38 38 H 1.08001 * 119.18031 * 180.02562 * 23 22 21 39 39 H 1.08003 * 120.49204 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.0877 -2.7948 0.0010 11 6 0.3419 -4.0917 0.7007 12 6 1.6799 -3.8153 0.0005 13 1 1.7442 -4.2466 -0.9984 14 6 2.8991 -4.1404 0.8659 15 7 4.1154 -3.6902 0.1847 16 6 5.3189 -3.8724 0.7636 17 8 5.3950 -4.4113 1.8515 18 6 6.5398 -3.4199 0.0800 19 6 7.8048 -3.5477 0.5601 20 6 8.6853 -2.9896 -0.3957 21 6 10.0724 -2.8287 -0.4704 22 7 10.6128 -2.2531 -1.5227 23 6 9.8878 -1.8095 -2.5374 24 6 8.5264 -1.9254 -2.5503 25 6 7.8884 -2.5253 -1.4653 26 7 6.5841 -2.8033 -1.1568 27 1 5.8165 -2.5985 -1.7132 28 1 -0.4849 0.8401 -0.0004 29 1 -0.7224 -2.1585 0.6179 30 1 -0.4938 -2.9545 -0.9979 31 1 -0.1731 -4.9837 0.3441 32 1 0.3830 -4.0207 1.7876 33 1 2.8101 -3.6308 1.8252 34 1 2.9518 -5.2168 1.0298 35 1 4.0547 -3.2601 -0.6827 36 1 8.0870 -3.9955 1.5016 37 1 10.7004 -3.1772 0.3362 38 1 10.3847 -1.3451 -3.3764 39 1 7.9530 -1.5573 -3.3882 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038417639.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:48:56 Heat of formation + Delta-G solvation = 92.239998 kcal Electronic energy + Delta-G solvation = -23474.181783 eV Core-core repulsion = 19998.289305 eV Total energy + Delta-G solvation = -3475.892477 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.96706 -39.55733 -38.35075 -37.75948 -34.37591 -32.55061 -32.35138 -30.94320 -29.55312 -28.21716 -27.78352 -24.51688 -23.59435 -22.98258 -22.23681 -21.40156 -20.26085 -19.46050 -18.78288 -17.69699 -16.72186 -16.04029 -15.71747 -15.61399 -15.38706 -15.13061 -14.59321 -14.45703 -14.27518 -13.99319 -13.65661 -13.48112 -13.25266 -13.10377 -12.76196 -12.03489 -11.67382 -11.64581 -11.24480 -11.11140 -10.87475 -10.71091 -10.26953 -10.26830 -9.97242 -9.96705 -9.71753 -9.39352 -9.03263 -8.93538 -8.81684 -8.11360 -7.03253 -5.89536 -3.23016 0.48801 1.36957 1.93404 2.64417 3.19306 3.27480 3.33829 3.35015 3.35837 3.77486 4.30634 4.34131 4.38710 4.67761 4.78441 4.92669 5.05989 5.14209 5.24529 5.29313 5.44131 5.54296 5.57069 5.66491 5.77236 5.84421 5.95238 6.16196 6.21491 6.27587 6.35777 6.47091 6.53383 6.61958 6.68206 7.06238 7.09589 7.26843 7.45353 7.59326 7.84453 7.91379 8.20565 8.89055 9.57113 10.49592 11.27226 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.014677 B = 0.004231 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.234260 B = 6616.639626 C = 7930.230600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.003 4.003 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.220 4.220 8 H 0.076 0.924 9 N -0.602 5.602 10 C 0.151 3.849 11 C -0.160 4.160 12 C 0.126 3.874 13 H 0.048 0.952 14 C 0.121 3.879 15 N -0.708 5.708 16 C 0.578 3.422 17 O -0.528 6.528 18 C 0.027 3.973 19 C -0.097 4.097 20 C -0.174 4.174 21 C 0.175 3.825 22 N -0.508 5.508 23 C 0.101 3.899 24 C -0.179 4.179 25 C 0.139 3.861 26 N -0.567 5.567 27 H 0.423 0.577 28 H 0.255 0.745 29 H 0.073 0.927 30 H 0.025 0.975 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.398 0.602 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.156 0.844 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.554 -7.783 -4.129 15.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.200 4.200 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.210 1.210 7 C -0.347 4.347 8 H 0.094 0.906 9 N -0.328 5.328 10 C 0.026 3.974 11 C -0.199 4.199 12 C 0.018 3.982 13 H 0.065 0.935 14 C -0.003 4.003 15 N -0.357 5.357 16 C 0.363 3.637 17 O -0.405 6.405 18 C -0.082 4.082 19 C -0.125 4.125 20 C -0.181 4.181 21 C 0.007 3.993 22 N -0.218 5.218 23 C -0.047 4.047 24 C -0.202 4.202 25 C 0.021 3.979 26 N -0.171 5.171 27 H 0.262 0.738 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.232 0.768 36 H 0.179 0.821 37 H 0.178 0.822 38 H 0.174 0.826 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 13.300 -7.635 -3.510 15.732 hybrid contribution -1.029 1.323 -0.941 1.923 sum 12.271 -6.312 -4.451 14.499 Atomic orbital electron populations 1.69809 1.04965 1.25570 1.55756 1.24764 0.95632 0.97408 1.02211 0.86290 0.78610 0.83468 0.77913 1.21300 1.21343 1.21021 1.18714 0.89765 0.81406 1.44845 0.90577 1.45658 1.02677 0.98445 1.85981 1.22035 0.88626 0.90218 0.96540 1.23666 0.96649 0.99114 1.00463 1.22444 0.92047 0.87895 0.95840 0.93465 1.21926 0.82489 0.98556 0.97347 1.45899 1.06114 1.60478 1.23186 1.17147 0.81956 0.79544 0.85084 1.90832 1.86272 1.43607 1.19769 1.20472 0.96003 1.04372 0.87367 1.20842 0.89298 1.02294 1.00043 1.19230 0.95319 1.06935 0.96622 1.22494 0.89999 0.91788 0.94990 1.67648 1.40276 1.12286 1.01607 1.22063 0.89799 0.96321 0.96480 1.20832 0.96020 1.05066 0.98238 1.18388 0.84070 0.98949 0.96498 1.41970 1.06918 1.50862 1.17392 0.73753 0.93472 0.90904 0.95686 0.92222 0.90070 0.90578 0.91736 0.76763 0.82063 0.82182 0.82627 0.84860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.06 11.51 55.49 0.64 -25.42 16 2 C 0.00 -0.07 5.50 -17.43 -0.10 -0.17 16 3 Si 0.91 21.43 29.55 -169.99 -5.02 16.41 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.22 -5.64 10.55 -15.06 -0.16 -5.80 16 8 H 0.08 1.86 7.50 -52.49 -0.39 1.46 16 9 N -0.60 -13.91 3.65 -176.98 -0.65 -14.56 16 10 C 0.15 3.31 7.39 -8.51 -0.06 3.24 16 11 C -0.16 -2.74 8.03 -26.20 -0.21 -2.95 16 12 C 0.13 2.25 4.10 -72.39 -0.30 1.96 16 13 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 14 C 0.12 2.03 5.52 -4.04 -0.02 2.01 16 15 N -0.71 -11.15 5.33 -61.50 -0.33 -11.47 16 16 C 0.58 9.37 7.80 -12.68 -0.10 9.27 16 17 O -0.53 -10.01 16.84 5.24 0.09 -9.93 16 18 C 0.03 0.38 6.97 -82.22 -0.57 -0.19 16 19 C -0.10 -1.26 10.53 -39.20 -0.41 -1.67 16 20 C -0.17 -2.16 6.21 -106.95 -0.66 -2.83 16 21 C 0.17 1.96 11.29 -17.07 -0.19 1.76 16 22 N -0.51 -6.06 10.33 -13.18 -0.14 -6.19 16 23 C 0.10 1.05 11.09 -17.90 -0.20 0.85 16 24 C -0.18 -1.87 10.09 -39.72 -0.40 -2.28 16 25 C 0.14 1.71 7.32 -84.03 -0.62 1.10 16 26 N -0.57 -6.89 6.05 -7.31 -0.04 -6.93 16 27 H 0.42 4.37 8.12 -40.82 -0.33 4.04 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.07 1.80 7.12 -51.93 -0.37 1.43 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.39 8.12 -51.93 -0.42 0.97 16 33 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.40 5.83 7.43 -40.82 -0.30 5.53 16 36 H 0.16 1.87 8.06 -52.48 -0.42 1.45 16 37 H 0.16 1.32 8.06 -52.49 -0.42 0.89 16 38 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 336.53 15.07 5.07 5.07 Total: -1.00 -32.09 336.53 -9.14 -41.23 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -4.76 Total: 7.48 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -4.00 Total: 4.31 kcal Atomic # 7 Polarization: -64.06 SS G_CDS: -0.52 Total: -64.58 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.09 -9.14 -41.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038417639.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.474 kcal (2) G-P(sol) polarization free energy of solvation -32.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds