Wall clock time and date at job start Fri Apr 10 2020 20:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 120.00048 * 2 1 4 4 H 1.48500 * 109.46974 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47039 * 299.99590 * 3 2 1 6 6 H 1.48494 * 109.47110 * 59.99970 * 3 2 1 7 7 C 1.38814 * 119.99581 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99878 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00453 * 359.97438 * 7 2 1 10 10 C 1.47586 * 134.49214 * 0.02562 * 9 7 2 11 11 C 1.53950 * 86.11814 * 155.35771 * 10 9 7 12 12 C 1.47585 * 134.49495 * 179.97438 * 9 7 2 13 13 H 1.09002 * 113.86542 * 90.33260 * 12 9 7 14 14 C 1.52997 * 113.77049 * 318.94949 * 12 9 7 15 15 N 1.46505 * 109.47212 * 78.49995 * 14 12 9 16 16 C 1.34771 * 119.99622 * 179.97438 * 15 14 12 17 17 O 1.21643 * 120.00728 * 0.02562 * 16 15 14 18 18 C 1.47071 * 119.99708 * 180.02562 * 16 15 14 19 19 C 1.35904 * 125.42536 * 179.69806 * 18 16 15 20 20 C 1.41428 * 107.67591 * 179.90286 * 19 18 16 21 21 C 1.39847 * 134.35052 * 180.02562 * 20 19 18 22 22 N 1.31559 * 120.03928 * 180.33266 * 21 20 19 23 23 C 1.32365 * 122.32437 * 359.97438 * 22 21 20 24 24 C 1.36640 * 121.64488 * 359.96936 * 23 22 21 25 25 C 1.39439 * 119.01223 * 0.06324 * 24 23 22 26 26 N 1.36877 * 134.32450 * 179.97438 * 25 24 23 27 27 H 0.96996 * 125.58962 * 359.97438 * 26 25 24 28 28 H 0.97001 * 120.00214 * 0.02562 * 1 2 3 29 29 H 1.08997 * 113.77110 * 41.05454 * 10 9 7 30 30 H 1.08997 * 113.86718 * 269.66802 * 10 9 7 31 31 H 1.09005 * 113.73853 * 269.26246 * 11 10 9 32 32 H 1.08994 * 113.83895 * 137.96738 * 11 10 9 33 33 H 1.09002 * 109.47153 * 318.49988 * 14 12 9 34 34 H 1.09001 * 109.46832 * 198.50179 * 14 12 9 35 35 H 0.96996 * 119.99606 * 0.02562 * 15 14 12 36 36 H 1.08004 * 126.15944 * 359.97438 * 19 18 16 37 37 H 1.07997 * 119.97774 * 0.34882 * 21 20 19 38 38 H 1.08005 * 119.17847 * 179.97438 * 23 22 21 39 39 H 1.07996 * 120.49402 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8915 2.3963 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 -0.1033 -2.7574 0.0019 11 6 0.3469 -4.0836 -0.6373 12 6 1.7201 -3.8102 0.0019 13 1 1.8332 -4.2363 0.9988 14 6 2.9017 -4.1226 -0.9184 15 7 4.1495 -3.7190 -0.2652 16 6 5.3280 -3.9004 -0.8933 17 8 5.3558 -4.3986 -2.0026 18 6 6.5806 -3.4958 -0.2374 19 6 7.8258 -3.6323 -0.7647 20 6 8.7493 -3.1221 0.1772 21 6 10.1411 -2.9895 0.2086 22 7 10.7290 -2.4641 1.2617 23 6 10.0483 -2.0453 2.3169 24 6 8.6860 -2.1348 2.3729 25 6 7.9992 -2.6826 1.2901 26 7 6.6792 -2.9187 1.0153 27 1 5.9351 -2.7160 1.6035 28 1 -0.4850 0.8400 -0.0004 29 1 -0.7169 -2.1397 -0.6538 30 1 -0.5289 -2.8725 0.9988 31 1 0.3590 -4.0636 -1.7271 32 1 -0.1585 -4.9610 -0.2340 33 1 2.7880 -3.5754 -1.8542 34 1 2.9289 -5.1927 -1.1242 35 1 4.1273 -3.3221 0.6195 36 1 8.0665 -4.0533 -1.7297 37 1 10.7336 -3.3183 -0.6324 38 1 10.5831 -1.6223 3.1545 39 1 8.1494 -1.7876 3.2434 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038417640.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:48:58 Heat of formation + Delta-G solvation = 88.598537 kcal Electronic energy + Delta-G solvation = -23429.248490 eV Core-core repulsion = 19953.198107 eV Total energy + Delta-G solvation = -3476.050383 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.97682 -39.54236 -38.22189 -37.72029 -34.38952 -32.56051 -32.30952 -30.95223 -29.56385 -28.17732 -27.79322 -24.55595 -23.48279 -22.99743 -22.34408 -21.44011 -20.27691 -19.39049 -18.75263 -17.70453 -16.70376 -16.05569 -15.72778 -15.62347 -15.39435 -15.13589 -14.60491 -14.46664 -14.28374 -13.96952 -13.66818 -13.49862 -13.26964 -13.11481 -12.77312 -12.01020 -11.68009 -11.55054 -11.24969 -11.13503 -10.84570 -10.65684 -10.28422 -10.27719 -9.96872 -9.84858 -9.72876 -9.54384 -9.04655 -8.91702 -8.83991 -8.12355 -7.01392 -5.88105 -3.21269 0.47869 1.36018 1.92495 2.63212 3.17840 3.28872 3.34075 3.34775 3.37269 3.76590 4.31079 4.33346 4.37774 4.66416 4.77427 4.91697 5.00015 5.13026 5.24208 5.29175 5.50013 5.53586 5.56235 5.65606 5.77801 5.83350 5.93911 6.15262 6.20860 6.28726 6.34901 6.48280 6.53219 6.61552 6.68370 7.05343 7.13255 7.29367 7.48446 7.57818 7.86658 7.90529 8.19342 8.91877 9.59267 10.47150 11.28356 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.014860 B = 0.004135 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.807658 B = 6770.175604 C = 8040.648415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.004 4.004 3 Si 0.906 3.094 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.223 4.223 8 H 0.076 0.924 9 N -0.603 5.603 10 C 0.159 3.841 11 C -0.155 4.155 12 C 0.124 3.876 13 H 0.049 0.951 14 C 0.123 3.877 15 N -0.708 5.708 16 C 0.578 3.422 17 O -0.527 6.527 18 C 0.027 3.973 19 C -0.097 4.097 20 C -0.174 4.174 21 C 0.175 3.825 22 N -0.508 5.508 23 C 0.101 3.899 24 C -0.179 4.179 25 C 0.139 3.861 26 N -0.567 5.567 27 H 0.423 0.577 28 H 0.254 0.746 29 H 0.074 0.926 30 H 0.027 0.973 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.398 0.602 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.157 0.843 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.892 -8.243 3.861 15.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.201 4.201 3 Si 0.737 3.263 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.351 4.351 8 H 0.094 0.906 9 N -0.329 5.329 10 C 0.034 3.966 11 C -0.194 4.194 12 C 0.017 3.983 13 H 0.067 0.933 14 C -0.002 4.002 15 N -0.357 5.357 16 C 0.363 3.637 17 O -0.404 6.404 18 C -0.082 4.082 19 C -0.125 4.125 20 C -0.181 4.181 21 C 0.007 3.993 22 N -0.218 5.218 23 C -0.047 4.047 24 C -0.202 4.202 25 C 0.021 3.979 26 N -0.171 5.171 27 H 0.262 0.738 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.045 0.955 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.232 0.768 36 H 0.179 0.821 37 H 0.178 0.822 38 H 0.174 0.826 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 13.613 -8.112 3.202 16.167 hybrid contribution -0.989 1.355 1.003 1.954 sum 12.624 -6.757 4.205 14.923 Atomic orbital electron populations 1.69821 1.04950 1.25284 1.56207 1.24754 0.95616 0.97407 1.02324 0.86147 0.78624 0.84095 0.77441 1.20700 1.21534 1.21699 1.18908 0.89980 0.81944 1.44262 0.90615 1.46072 1.02359 0.98457 1.86017 1.22201 0.87862 0.89613 0.96967 1.23763 0.95883 0.99039 1.00677 1.22514 0.92411 0.87807 0.95617 0.93340 1.21882 0.81630 0.99087 0.97558 1.45892 1.06283 1.62510 1.21043 1.17138 0.82019 0.79229 0.85308 1.90833 1.86504 1.44540 1.18530 1.20475 0.95940 1.05085 0.86733 1.20842 0.89104 1.02444 1.00062 1.19231 0.95389 1.07453 0.96039 1.22498 0.89464 0.91792 0.95500 1.67651 1.40443 1.12684 1.01033 1.22067 0.90256 0.96172 0.96159 1.20831 0.95527 1.05600 0.98214 1.18389 0.83872 0.99211 0.96435 1.41962 1.06621 1.52522 1.16043 0.73778 0.93607 0.90750 0.95515 0.90385 0.92685 0.90449 0.91633 0.76844 0.82053 0.82173 0.82623 0.84864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.12 11.38 55.49 0.63 -25.49 16 2 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 3 Si 0.91 21.55 29.55 -169.99 -5.02 16.52 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 7 C -0.22 -5.75 10.51 -15.06 -0.16 -5.91 16 8 H 0.08 1.87 7.80 -52.48 -0.41 1.46 16 9 N -0.60 -13.95 3.58 -170.73 -0.61 -14.56 16 10 C 0.16 3.48 7.52 -2.97 -0.02 3.46 16 11 C -0.15 -2.66 7.86 -25.82 -0.20 -2.86 16 12 C 0.12 2.22 4.33 -66.88 -0.29 1.93 16 13 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 14 C 0.12 2.05 5.54 -4.04 -0.02 2.03 16 15 N -0.71 -11.03 5.52 -61.49 -0.34 -11.37 16 16 C 0.58 9.31 7.80 -12.68 -0.10 9.21 16 17 O -0.53 -9.96 16.84 5.24 0.09 -9.87 16 18 C 0.03 0.38 6.97 -82.22 -0.57 -0.20 16 19 C -0.10 -1.25 10.53 -39.21 -0.41 -1.66 16 20 C -0.17 -2.15 6.21 -106.95 -0.66 -2.81 16 21 C 0.18 1.95 11.29 -17.07 -0.19 1.75 16 22 N -0.51 -6.01 10.33 -13.18 -0.14 -6.15 16 23 C 0.10 1.04 11.09 -17.90 -0.20 0.84 16 24 C -0.18 -1.85 10.09 -39.71 -0.40 -2.25 16 25 C 0.14 1.69 7.32 -84.03 -0.62 1.08 16 26 N -0.57 -6.81 6.05 -7.31 -0.04 -6.85 16 27 H 0.42 4.27 8.12 -40.82 -0.33 3.94 16 28 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.07 1.83 7.15 -51.93 -0.37 1.46 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.40 5.69 7.53 -40.82 -0.31 5.38 16 36 H 0.16 1.86 8.06 -52.48 -0.42 1.43 16 37 H 0.16 1.31 8.06 -52.49 -0.42 0.88 16 38 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 337.08 15.07 5.08 5.08 Total: -1.00 -32.30 337.08 -9.08 -41.38 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -4.78 Total: 6.91 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -3.95 Total: 4.41 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: -0.50 Total: -64.43 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.30 -9.08 -41.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038417640.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.978 kcal (2) G-P(sol) polarization free energy of solvation -32.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds