Wall clock time and date at job start Fri Apr 10 2020 20:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 120.00048 * 2 1 4 4 H 1.48500 * 109.46974 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47039 * 299.99590 * 3 2 1 6 6 H 1.48494 * 109.47110 * 59.99970 * 3 2 1 7 7 C 1.38814 * 119.99581 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99878 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00453 * 359.97438 * 7 2 1 10 10 C 1.47586 * 134.49214 * 0.02562 * 9 7 2 11 11 C 1.53950 * 86.11814 * 155.35771 * 10 9 7 12 12 C 1.47585 * 134.49495 * 179.97438 * 9 7 2 13 13 H 1.09002 * 113.86542 * 90.33260 * 12 9 7 14 14 C 1.52997 * 113.77049 * 318.94949 * 12 9 7 15 15 N 1.46505 * 109.47212 * 78.49995 * 14 12 9 16 16 C 1.34771 * 119.99622 * 179.97438 * 15 14 12 17 17 O 1.21606 * 120.00433 * 0.02562 * 16 15 14 18 18 C 1.47379 * 119.99728 * 180.02562 * 16 15 14 19 19 C 1.39256 * 120.83787 * 359.72448 * 18 16 15 20 20 N 1.31908 * 120.97338 * 179.67941 * 19 18 16 21 21 C 1.31924 * 122.71854 * 0.63978 * 20 19 18 22 22 C 1.38700 * 120.79170 * 359.65622 * 21 20 19 23 23 N 1.37747 * 134.30815 * 180.02562 * 22 21 20 24 24 H 0.97001 * 125.55831 * 359.97438 * 23 22 21 25 25 C 1.36551 * 108.88413 * 180.02562 * 23 22 21 26 26 C 1.34652 * 109.66129 * 359.97438 * 25 23 22 27 27 C 1.40986 * 118.83676 * 0.02562 * 22 21 20 28 28 H 0.97001 * 120.00214 * 0.02562 * 1 2 3 29 29 H 1.08997 * 113.77110 * 41.05454 * 10 9 7 30 30 H 1.08997 * 113.86718 * 269.66802 * 10 9 7 31 31 H 1.09005 * 113.73853 * 269.26246 * 11 10 9 32 32 H 1.08994 * 113.83895 * 137.96738 * 11 10 9 33 33 H 1.09002 * 109.47153 * 318.49988 * 14 12 9 34 34 H 1.09001 * 109.46832 * 198.50179 * 14 12 9 35 35 H 0.96996 * 119.99606 * 0.02562 * 15 14 12 36 36 H 1.08005 * 119.51246 * 359.97438 * 19 18 16 37 37 H 1.07991 * 119.60627 * 179.67551 * 21 20 19 38 38 H 1.08006 * 125.17461 * 180.02562 * 25 23 22 39 39 H 1.07998 * 126.09347 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8915 2.3963 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 -0.1033 -2.7574 0.0019 11 6 0.3469 -4.0836 -0.6373 12 6 1.7201 -3.8102 0.0019 13 1 1.8332 -4.2363 0.9988 14 6 2.9017 -4.1226 -0.9184 15 7 4.1495 -3.7190 -0.2652 16 6 5.3280 -3.9004 -0.8933 17 8 5.3558 -4.3985 -2.0023 18 6 6.5833 -3.4949 -0.2360 19 6 6.5714 -2.9177 1.0312 20 7 7.6937 -2.5596 1.6246 21 6 8.8774 -2.7104 1.0620 22 6 8.9969 -3.2701 -0.2014 23 7 10.0587 -3.5530 -1.0320 24 1 10.9924 -3.3817 -0.8322 25 6 9.5827 -4.1128 -2.1829 26 6 8.2405 -4.2018 -2.1220 27 6 7.8289 -3.6766 -0.8783 28 1 -0.4850 0.8400 -0.0004 29 1 -0.7169 -2.1397 -0.6538 30 1 -0.5289 -2.8725 0.9988 31 1 0.3590 -4.0636 -1.7271 32 1 -0.1585 -4.9610 -0.2340 33 1 2.7880 -3.5754 -1.8542 34 1 2.9289 -5.1927 -1.1242 35 1 4.1273 -3.3221 0.6195 36 1 5.6297 -2.7653 1.5377 37 1 9.7640 -2.3946 1.5916 38 1 10.1904 -4.4361 -3.0152 39 1 7.5941 -4.6035 -2.8882 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038467304.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:05 Heat of formation + Delta-G solvation = 95.476458 kcal Electronic energy + Delta-G solvation = -23696.739868 eV Core-core repulsion = 20220.987734 eV Total energy + Delta-G solvation = -3475.752134 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.89182 -39.36410 -38.10256 -37.69281 -34.07820 -32.66894 -32.14392 -30.19947 -29.94150 -27.95434 -27.46693 -24.48531 -23.33864 -22.72496 -22.19086 -21.05191 -20.50541 -19.20196 -18.49350 -17.36739 -16.79643 -16.45164 -15.75400 -15.37801 -15.03351 -14.99977 -14.80216 -14.37608 -14.07229 -13.68343 -13.32891 -13.20597 -12.95843 -12.72002 -12.54199 -12.08311 -11.84838 -11.40697 -11.07835 -10.99376 -10.71617 -10.51209 -10.25235 -10.20225 -9.90655 -9.71367 -9.50600 -9.21944 -8.79435 -8.77348 -8.59942 -8.04897 -6.86601 -5.73804 -3.06108 0.43673 1.32056 2.56011 2.77407 3.11665 3.40867 3.47367 3.48868 3.51358 4.00408 4.31452 4.46098 4.58662 4.63401 4.76501 5.00711 5.11784 5.16618 5.28125 5.42484 5.57542 5.64146 5.68468 5.81621 5.94732 6.08461 6.12212 6.30865 6.33837 6.42593 6.50123 6.64530 6.70925 6.74429 6.90681 7.15803 7.27824 7.43733 7.62429 7.86126 7.91015 8.01403 8.55544 9.07312 9.74150 10.61932 11.42954 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.015971 B = 0.004307 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.730150 B = 6499.797842 C = 7503.786064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.218 4.218 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.159 3.841 11 C -0.155 4.155 12 C 0.125 3.875 13 H 0.050 0.950 14 C 0.124 3.876 15 N -0.708 5.708 16 C 0.560 3.440 17 O -0.542 6.542 18 C -0.136 4.136 19 C 0.100 3.900 20 N -0.471 5.471 21 C 0.134 3.866 22 C 0.017 3.983 23 N -0.579 5.579 24 H 0.420 0.580 25 C 0.062 3.938 26 C -0.188 4.188 27 C -0.022 4.022 28 H 0.252 0.748 29 H 0.073 0.927 30 H 0.026 0.974 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.401 0.599 36 H 0.162 0.838 37 H 0.156 0.844 38 H 0.178 0.822 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.825 -9.938 -0.613 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.345 4.345 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.034 3.966 11 C -0.194 4.194 12 C 0.017 3.983 13 H 0.068 0.932 14 C 0.000 4.000 15 N -0.358 5.358 16 C 0.346 3.654 17 O -0.421 6.421 18 C -0.142 4.142 19 C -0.052 4.052 20 N -0.179 5.179 21 C -0.033 4.033 22 C -0.093 4.093 23 N -0.182 5.182 24 H 0.258 0.742 25 C -0.068 4.068 26 C -0.213 4.213 27 C -0.034 4.034 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.044 0.956 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.237 0.763 36 H 0.179 0.821 37 H 0.173 0.827 38 H 0.195 0.805 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 17.832 -9.554 -0.557 20.238 hybrid contribution 0.936 0.988 -0.181 1.373 sum 18.768 -8.566 -0.738 20.644 Atomic orbital electron populations 1.69829 1.04948 1.25093 1.56796 1.24738 0.95593 0.97363 1.02596 0.86146 0.78888 0.84145 0.77248 1.20465 1.21785 1.21758 1.18990 0.90181 0.81893 1.43470 0.90309 1.46080 1.02291 0.98553 1.85931 1.22194 0.87946 0.89593 0.96908 1.23764 0.96111 0.98971 1.00586 1.22514 0.92363 0.87708 0.95695 0.93233 1.21791 0.82025 0.98795 0.97414 1.45898 1.05970 1.62624 1.21291 1.17848 0.83159 0.78951 0.85403 1.90714 1.87319 1.44740 1.19337 1.20510 0.93114 1.04311 0.96279 1.22733 0.96762 0.94358 0.91301 1.67590 0.97637 1.17523 1.35186 1.21910 0.96291 0.95820 0.89281 1.19354 0.88106 1.06250 0.95569 1.41728 1.08033 1.53682 1.14746 0.74193 1.22186 0.95271 0.99353 0.89984 1.20918 0.93818 1.08117 0.98445 1.18184 0.90998 0.99019 0.95218 0.93783 0.90843 0.95569 0.90508 0.92798 0.90791 0.92001 0.76317 0.82137 0.82719 0.80534 0.82272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.10 11.38 55.49 0.63 -26.47 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.22 -5.88 10.51 -15.06 -0.16 -6.04 16 8 H 0.08 2.06 7.80 -52.48 -0.41 1.65 16 9 N -0.60 -14.67 3.58 -170.73 -0.61 -15.28 16 10 C 0.16 3.64 7.52 -2.97 -0.02 3.62 16 11 C -0.16 -2.83 7.86 -25.82 -0.20 -3.03 16 12 C 0.12 2.40 4.33 -66.88 -0.29 2.11 16 13 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 14 C 0.12 2.26 5.53 -4.04 -0.02 2.24 16 15 N -0.71 -12.37 5.48 -61.40 -0.34 -12.71 16 16 C 0.56 10.13 7.77 -12.54 -0.10 10.03 16 17 O -0.54 -11.00 15.22 5.27 0.08 -10.92 16 18 C -0.14 -2.20 5.91 -104.63 -0.62 -2.82 16 19 C 0.10 1.50 10.71 -17.14 -0.18 1.32 16 20 N -0.47 -6.72 10.30 -12.85 -0.13 -6.85 16 21 C 0.13 1.55 11.22 -17.34 -0.19 1.35 16 22 C 0.02 0.20 7.31 -84.00 -0.61 -0.41 16 23 N -0.58 -4.69 6.13 -10.63 -0.07 -4.75 16 24 H 0.42 1.75 8.96 -40.82 -0.37 1.38 16 25 C 0.06 0.54 11.83 -16.72 -0.20 0.34 16 26 C -0.19 -2.44 10.09 -39.75 -0.40 -2.84 16 27 C -0.02 -0.33 6.04 -106.59 -0.64 -0.97 16 28 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.07 1.88 7.15 -51.93 -0.37 1.51 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.40 6.61 6.55 -40.82 -0.27 6.34 16 36 H 0.16 2.21 6.42 -52.48 -0.34 1.87 16 37 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.18 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.16 2.21 7.19 -52.49 -0.38 1.83 16 LS Contribution 332.41 15.07 5.01 5.01 Total: -1.00 -34.83 332.41 -8.83 -43.66 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -4.64 Total: 6.31 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -3.74 Total: 4.61 kcal Atomic # 7 Polarization: -65.55 SS G_CDS: -0.51 Total: -66.07 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.08 Total: -10.92 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.83 -8.83 -43.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038467304.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.137 kcal (2) G-P(sol) polarization free energy of solvation -34.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds