Wall clock time and date at job start Fri Apr 10 2020 20:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99830 * 2 1 4 4 H 1.48497 * 109.46902 * 239.99669 * 3 2 1 5 5 H 1.48497 * 109.47117 * 119.99922 * 3 2 1 6 6 H 1.48497 * 109.47351 * 359.97438 * 3 2 1 7 7 C 1.38815 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99925 * 205.35642 * 7 2 1 9 9 N 1.36940 * 119.99835 * 25.36254 * 7 2 1 10 10 C 1.46883 * 120.46013 * 208.19146 * 9 7 2 11 11 C 1.52858 * 109.01712 * 235.48469 * 10 9 7 12 12 C 1.52669 * 109.18029 * 307.82321 * 11 10 9 13 13 C 1.53477 * 113.62751 * 188.99489 * 12 11 10 14 14 N 1.47669 * 85.98784 * 137.70605 * 13 12 11 15 15 C 1.34774 * 134.45269 * 155.70189 * 14 13 12 16 16 O 1.21288 * 119.99778 * 179.97438 * 15 14 13 17 17 C 1.50701 * 120.00462 * 359.97369 * 15 14 13 18 18 H 1.08999 * 115.54642 * 325.58227 * 17 15 14 19 19 C 1.52999 * 117.50003 * 179.91113 * 17 15 14 20 20 C 1.52998 * 117.50250 * 111.25095 * 17 15 14 21 21 F 1.39898 * 117.50047 * 214.98316 * 20 17 15 22 22 F 1.39900 * 117.49431 * 0.02562 * 20 17 15 23 23 C 1.47664 * 91.08582 * 335.68315 * 14 13 12 24 24 C 1.52677 * 113.18551 * 57.45783 * 12 11 10 25 25 C 1.46879 * 120.46727 * 28.47156 * 9 7 2 26 26 H 0.97007 * 119.99964 * 184.24424 * 1 2 3 27 27 H 1.08996 * 109.59070 * 355.31579 * 10 9 7 28 28 H 1.09000 * 109.58504 * 115.75147 * 10 9 7 29 29 H 1.08994 * 109.61200 * 187.84301 * 11 10 9 30 30 H 1.08999 * 109.38569 * 67.66420 * 11 10 9 31 31 H 1.09000 * 113.78924 * 251.97684 * 13 12 11 32 32 H 1.09001 * 113.79095 * 23.43324 * 13 12 11 33 33 H 1.09003 * 117.49774 * 359.97438 * 19 17 15 34 34 H 1.09006 * 117.49863 * 144.99250 * 19 17 15 35 35 H 1.09004 * 113.79035 * 270.04982 * 23 14 13 36 36 H 1.09001 * 113.89745 * 138.59892 * 23 14 13 37 37 H 1.08996 * 109.53334 * 182.52264 * 24 12 11 38 38 H 1.08997 * 109.53137 * 62.29934 * 24 12 11 39 39 H 1.09006 * 109.58807 * 244.25606 * 25 9 7 40 40 H 1.08999 * 109.58751 * 4.54318 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2124 5 1 3.1039 1.6964 1.2125 6 1 1.2852 2.7464 -0.0006 7 6 2.0102 -1.2022 0.0005 8 1 3.0122 -1.2471 0.4011 9 7 1.4244 -2.3312 -0.5070 10 6 1.8038 -3.6577 -0.0031 11 6 2.2547 -4.5263 -1.1774 12 6 1.1804 -4.5007 -2.2617 13 6 1.4243 -5.5086 -3.3932 14 7 -0.0229 -5.7913 -3.3132 15 6 -0.9385 -6.2777 -4.1742 16 8 -2.0924 -6.4067 -3.8235 17 6 -0.5288 -6.6612 -5.5729 18 1 0.2522 -6.0458 -6.0193 19 6 -1.6141 -7.2091 -6.5017 20 6 -0.5482 -8.1483 -5.9320 21 9 0.4376 -8.6140 -6.8086 22 9 -0.9454 -9.0479 -4.9370 23 6 -0.0645 -5.3279 -1.9118 24 6 0.8585 -3.0924 -2.7559 25 6 0.4125 -2.2329 -1.5670 26 1 -0.4850 -0.8378 0.0622 27 1 2.6217 -3.5574 0.7104 28 1 0.9464 -4.1227 0.4834 29 1 2.4054 -5.5509 -0.8378 30 1 3.1884 -4.1337 -1.5802 31 1 1.7314 -5.0492 -4.3327 32 1 2.0534 -6.3505 -3.1041 33 1 -2.6244 -7.2925 -6.1011 34 1 -1.5472 -6.9540 -7.5594 35 1 0.1221 -6.1161 -1.1823 36 1 -0.9402 -4.7248 -1.6719 37 1 0.0567 -3.1392 -3.4928 38 1 1.7469 -2.6535 -3.2098 39 1 -0.5450 -2.5954 -1.1928 40 1 0.3123 -1.1941 -1.8814 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050513201.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:19 Heat of formation + Delta-G solvation = -44.675833 kcal Electronic energy + Delta-G solvation = -25040.567851 eV Core-core repulsion = 21108.049072 eV Total energy + Delta-G solvation = -3932.518780 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.139 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.03652 -47.70741 -40.84816 -38.86923 -36.24813 -35.67351 -32.75708 -30.56131 -30.04514 -27.49369 -26.56455 -24.38001 -23.55708 -22.90696 -22.53868 -20.91581 -19.46542 -18.31111 -18.23567 -17.44479 -17.06171 -16.66341 -16.32754 -15.85206 -15.29095 -14.52580 -14.35858 -14.19618 -14.06617 -13.85931 -13.81105 -13.77914 -13.55560 -13.45290 -12.96591 -12.63644 -12.27194 -12.20498 -11.80785 -11.75884 -11.56427 -10.93979 -10.74662 -10.60798 -10.50302 -10.29208 -10.18519 -10.06501 -9.92508 -9.72590 -9.30508 -8.73782 -8.38810 -6.90537 -6.11595 -3.26549 1.92834 2.51581 2.68471 3.12661 3.47554 3.50393 3.68810 3.81723 3.84944 4.19333 4.39744 4.45853 4.56589 4.92816 4.95892 5.06406 5.15129 5.24748 5.32868 5.36865 5.39715 5.42431 5.49124 5.67712 5.77137 5.88619 5.92311 6.10169 6.22139 6.37286 6.41072 6.46399 6.65132 6.74567 6.98333 7.13688 7.59644 7.96106 7.98408 8.54934 9.08648 9.81715 10.25829 11.18327 Molecular weight = 300.14amu Principal moments of inertia in cm(-1) A = 0.031744 B = 0.003299 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.856799 B = 8486.050622 C = 8624.550540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.023 4.023 3 Si 1.065 2.935 4 H -0.293 1.293 5 H -0.293 1.293 6 H -0.286 1.286 7 C -0.353 4.353 8 H 0.056 0.944 9 N -0.597 5.597 10 C 0.148 3.852 11 C -0.119 4.119 12 C -0.074 4.074 13 C 0.101 3.899 14 N -0.631 5.631 15 C 0.562 3.438 16 O -0.532 6.532 17 C -0.187 4.187 18 H 0.148 0.852 19 C -0.140 4.140 20 C 0.220 3.780 21 F -0.155 7.155 22 F -0.151 7.151 23 C 0.119 3.881 24 C -0.111 4.111 25 C 0.152 3.848 26 H 0.269 0.731 27 H 0.057 0.943 28 H 0.017 0.983 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.017 0.983 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.016 -14.228 -12.272 18.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.225 4.225 3 Si 0.894 3.106 4 H -0.221 1.221 5 H -0.220 1.220 6 H -0.211 1.211 7 C -0.482 4.482 8 H 0.073 0.927 9 N -0.321 5.321 10 C 0.022 3.978 11 C -0.159 4.159 12 C -0.075 4.075 13 C -0.021 4.021 14 N -0.365 5.365 15 C 0.350 3.650 16 O -0.409 6.409 17 C -0.209 4.209 18 H 0.165 0.835 19 C -0.178 4.178 20 C 0.183 3.817 21 F -0.136 7.136 22 F -0.132 7.132 23 C -0.003 4.003 24 C -0.150 4.150 25 C 0.026 3.974 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.154 0.846 34 H 0.151 0.849 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.035 0.965 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.096 -12.732 -12.229 17.687 hybrid contribution 0.507 -2.014 0.016 2.077 sum 1.603 -14.746 -12.213 19.213 Atomic orbital electron populations 1.70800 1.06615 1.30282 1.47679 1.25855 0.96489 1.01516 0.98679 0.83521 0.74801 0.76048 0.76189 1.22069 1.21977 1.21113 1.19958 0.97799 0.88516 1.41963 0.92651 1.44066 1.47340 1.01298 1.39398 1.20781 0.97466 0.86502 0.93070 1.21872 0.97550 0.99596 0.96902 1.21999 0.95283 0.95227 0.95016 1.23529 0.80803 0.97515 1.00295 1.49928 1.09782 1.62683 1.14110 1.18740 0.84777 0.76916 0.84592 1.90732 1.18340 1.53979 1.77805 1.23661 1.04716 0.95489 0.97000 0.83472 1.24327 0.97108 0.95458 1.00914 1.19696 0.92669 0.83176 0.86176 1.93056 1.62689 1.90084 1.67748 1.93081 1.90222 1.69443 1.60412 1.23338 0.99395 0.95846 0.81704 1.21837 1.00855 0.92827 0.99471 1.20938 0.90528 0.99199 0.86779 0.91990 0.92426 0.96555 0.92465 0.91450 0.90031 0.89537 0.84577 0.84921 0.89743 0.89604 0.92888 0.91580 0.96492 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.81 12.44 55.49 0.69 -26.12 16 2 C -0.02 -0.64 4.66 -17.43 -0.08 -0.72 16 3 Si 1.06 24.59 29.99 -169.99 -5.10 19.50 16 4 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.35 -9.49 9.46 -15.06 -0.14 -9.63 16 8 H 0.06 1.49 7.95 -52.49 -0.42 1.08 16 9 N -0.60 -14.09 2.82 -172.50 -0.49 -14.58 16 10 C 0.15 2.86 6.36 -3.91 -0.02 2.84 16 11 C -0.12 -1.78 5.24 -26.97 -0.14 -1.93 16 12 C -0.07 -1.08 0.77 -154.43 -0.12 -1.19 16 13 C 0.10 1.16 7.74 -3.16 -0.02 1.14 16 14 N -0.63 -8.75 3.44 -180.24 -0.62 -9.37 16 15 C 0.56 8.16 7.47 -10.99 -0.08 8.08 16 16 O -0.53 -9.58 16.99 5.55 0.09 -9.48 16 17 C -0.19 -1.94 5.92 -91.77 -0.54 -2.49 16 18 H 0.15 1.18 8.14 -51.93 -0.42 0.75 16 19 C -0.14 -1.19 10.02 -26.70 -0.27 -1.46 16 20 C 0.22 2.34 5.20 -26.70 -0.14 2.20 16 21 F -0.16 -1.61 17.60 2.25 0.04 -1.57 16 22 F -0.15 -2.00 17.13 2.25 0.04 -1.96 16 23 C 0.12 1.75 7.62 -3.15 -0.02 1.73 16 24 C -0.11 -1.90 5.22 -26.72 -0.14 -2.04 16 25 C 0.15 3.35 4.57 -3.66 -0.02 3.33 16 26 H 0.27 7.96 6.74 -40.82 -0.27 7.69 16 27 H 0.06 1.12 7.92 -51.93 -0.41 0.71 16 28 H 0.02 0.32 8.07 -51.93 -0.42 -0.10 16 29 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 32 H 0.09 0.85 8.09 -51.93 -0.42 0.43 16 33 H 0.14 1.27 7.67 -51.93 -0.40 0.87 16 34 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 36 H 0.09 1.44 7.41 -51.93 -0.38 1.05 16 37 H 0.05 0.87 8.01 -51.93 -0.42 0.46 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.02 0.39 7.28 -51.93 -0.38 0.01 16 40 H 0.08 2.07 6.24 -51.93 -0.32 1.75 16 LS Contribution 334.21 15.07 5.04 5.04 Total: -1.00 -31.88 334.21 -7.64 -39.52 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -5.59 Total: -0.82 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -1.75 Total: -0.15 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: -0.42 Total: -50.07 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.08 Total: -3.53 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -5.10 Total: 19.50 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.88 -7.64 -39.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050513201.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.155 kcal (2) G-P(sol) polarization free energy of solvation -31.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds