Wall clock time and date at job start Fri Apr 10 2020 20:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00099 * 2 1 4 4 H 1.48508 * 109.47007 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47415 * 239.99819 * 3 2 1 6 6 H 1.48496 * 109.47541 * 119.99659 * 3 2 1 7 7 C 1.38810 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99935 * 155.26629 * 7 2 1 9 9 N 1.36938 * 119.99803 * 335.26431 * 7 2 1 10 10 C 1.46539 * 119.73780 * 331.44742 * 9 7 2 11 11 C 1.52702 * 108.48739 * 236.40182 * 10 9 7 12 12 C 1.53061 * 109.28536 * 301.79144 * 11 10 9 13 13 H 1.09006 * 114.44550 * 274.94196 * 12 11 10 14 14 C 1.54079 * 111.39327 * 142.28912 * 12 11 10 15 15 N 1.47281 * 87.61059 * 273.97452 * 14 12 11 16 16 C 1.34774 * 136.54562 * 151.37711 * 15 14 12 17 17 O 1.21278 * 120.00412 * 180.02562 * 16 15 14 18 18 C 1.50700 * 119.99979 * 0.02562 * 16 15 14 19 19 C 1.53002 * 115.55040 * 34.32494 * 18 16 15 20 20 F 1.39890 * 109.47333 * 85.58304 * 19 18 16 21 21 F 1.39901 * 109.47112 * 205.58681 * 19 18 16 22 22 C 1.53001 * 117.49821 * 248.61915 * 18 16 15 23 23 C 1.53002 * 60.00054 * 252.50554 * 22 18 16 24 24 C 1.46474 * 86.91368 * 331.38730 * 15 14 12 25 25 H 1.08996 * 111.43427 * 277.09716 * 24 15 14 26 26 C 1.45700 * 119.73354 * 151.72399 * 9 7 2 27 27 H 0.97004 * 120.00074 * 174.29249 * 1 2 3 28 28 H 1.08997 * 109.70762 * 356.13149 * 10 9 7 29 29 H 1.08997 * 109.70362 * 116.75257 * 10 9 7 30 30 H 1.09001 * 109.56840 * 181.79327 * 11 10 9 31 31 H 1.08999 * 109.38546 * 61.68314 * 11 10 9 32 32 H 1.09008 * 113.52793 * 159.29008 * 14 12 11 33 33 H 1.09000 * 113.59001 * 28.67462 * 14 12 11 34 34 H 1.09003 * 109.46835 * 325.58160 * 19 18 16 35 35 H 1.09000 * 117.49757 * 359.97438 * 22 18 16 36 36 H 1.09005 * 117.50052 * 145.02096 * 22 18 16 37 37 H 1.08992 * 117.50233 * 252.51157 * 23 22 18 38 38 H 1.09000 * 117.51542 * 107.47405 * 23 22 18 39 39 H 1.09000 * 108.78762 * 260.87974 * 26 9 7 40 40 H 1.09001 * 108.78984 * 19.21435 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0159 -1.2452 -0.3908 9 7 1.4197 -2.3334 0.4973 10 6 0.4032 -2.2218 1.5468 11 6 0.8472 -3.0617 2.7423 12 6 1.0377 -4.5137 2.2971 13 1 0.1258 -5.1108 2.3036 14 6 2.2471 -5.1623 2.9977 15 7 3.0897 -4.6002 1.9284 16 6 4.3667 -4.1878 1.8039 17 8 4.7645 -3.7583 0.7418 18 6 5.3005 -4.2605 2.9845 19 6 5.0813 -5.4455 3.9273 20 9 5.7789 -6.5589 3.4468 21 9 5.5487 -5.1179 5.2045 22 6 5.7593 -2.9392 3.6047 23 6 6.7377 -3.7774 2.7794 24 6 1.9126 -4.6916 1.0615 25 1 1.7996 -5.6936 0.6476 26 6 1.8116 -3.6388 -0.0177 27 1 -0.4850 -0.8359 -0.0835 28 1 0.3003 -1.1798 1.8496 29 1 -0.5516 -2.5930 1.1746 30 1 0.0873 -3.0168 3.5225 31 1 1.7895 -2.6724 3.1279 32 1 2.2159 -6.2519 2.9997 33 1 2.4568 -4.7442 3.9822 34 1 4.0175 -5.6774 3.9781 35 1 5.3860 -2.0174 3.1586 36 1 5.9050 -2.9139 4.6847 37 1 7.5269 -4.3035 3.3163 38 1 7.0078 -3.4074 1.7904 39 1 1.0757 -3.9609 -0.7545 40 1 2.7809 -3.5464 -0.5076 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084342273.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:32 Heat of formation + Delta-G solvation = -36.096246 kcal Electronic energy + Delta-G solvation = -26316.570263 eV Core-core repulsion = 22384.423522 eV Total energy + Delta-G solvation = -3932.146741 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.139 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.20432 -47.17913 -40.97200 -38.78451 -36.13944 -35.66373 -31.93158 -31.05189 -29.49518 -27.44079 -26.92427 -24.10980 -23.49317 -22.68460 -22.35231 -21.08676 -19.72261 -18.40809 -17.76485 -17.42160 -17.33432 -16.85407 -15.88987 -15.63562 -15.52014 -14.43716 -14.23380 -14.08530 -13.87634 -13.72921 -13.55012 -13.52926 -13.39900 -13.08242 -12.79845 -12.69713 -11.99650 -11.89762 -11.74330 -11.55084 -11.21904 -10.87707 -10.73543 -10.69144 -10.64596 -10.46855 -10.13925 -9.97475 -9.89826 -9.48137 -9.18062 -8.52905 -8.31292 -6.83449 -6.02797 -3.18716 2.55570 2.81379 3.33540 3.53474 3.54541 3.60727 3.73534 3.96775 4.08949 4.34173 4.41854 4.52195 4.63126 4.89997 4.93014 5.01350 5.14681 5.22772 5.23939 5.31400 5.44421 5.48775 5.54421 5.68453 5.77615 5.81819 5.83797 6.01227 6.03354 6.30342 6.40475 6.45570 6.66632 6.82063 7.02644 7.18308 7.91910 8.13838 8.34373 8.63661 9.18434 9.90539 10.28906 11.25651 Molecular weight = 300.14amu Principal moments of inertia in cm(-1) A = 0.017976 B = 0.005653 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.289578 B = 4952.341213 C = 5687.799089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.025 4.025 3 Si 1.062 2.938 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.295 1.295 7 C -0.340 4.340 8 H 0.055 0.945 9 N -0.588 5.588 10 C 0.149 3.851 11 C -0.118 4.118 12 C -0.106 4.106 13 H 0.097 0.903 14 C 0.080 3.920 15 N -0.631 5.631 16 C 0.590 3.410 17 O -0.513 6.513 18 C -0.232 4.232 19 C 0.294 3.706 20 F -0.199 7.199 21 F -0.199 7.199 22 C -0.127 4.127 23 C -0.125 4.125 24 C 0.128 3.872 25 H 0.079 0.921 26 C 0.144 3.856 27 H 0.268 0.732 28 H 0.085 0.915 29 H 0.018 0.982 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.018 0.982 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.976 -12.262 10.821 17.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.226 4.226 3 Si 0.892 3.108 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.222 1.222 7 C -0.469 4.469 8 H 0.073 0.927 9 N -0.312 5.312 10 C 0.023 3.977 11 C -0.157 4.157 12 C -0.125 4.125 13 H 0.115 0.885 14 C -0.043 4.043 15 N -0.366 5.366 16 C 0.377 3.623 17 O -0.388 6.388 18 C -0.236 4.236 19 C 0.241 3.759 20 F -0.180 7.180 21 F -0.180 7.180 22 C -0.164 4.164 23 C -0.163 4.163 24 C 0.025 3.975 25 H 0.097 0.903 26 C 0.017 3.983 27 H 0.078 0.922 28 H 0.104 0.896 29 H 0.036 0.964 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.137 0.863 39 H 0.036 0.964 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.309 -10.308 10.264 15.856 hybrid contribution 0.316 -2.074 0.047 2.098 sum 6.624 -12.382 10.311 17.422 Atomic orbital electron populations 1.70791 1.06502 1.30147 1.48524 1.25761 0.96503 1.01255 0.99097 0.83568 0.74802 0.76220 0.76247 1.21120 1.22009 1.22231 1.20016 0.97414 0.88290 1.41212 0.92683 1.43531 1.46139 1.01004 1.40490 1.20771 0.90410 0.99625 0.86867 1.21832 1.01372 0.92788 0.99737 1.22804 0.95866 0.98338 0.95483 0.88499 1.23531 0.89514 0.98399 0.92881 1.49326 1.08495 1.62591 1.16227 1.18181 0.79141 0.77629 0.87302 1.90738 1.74558 1.45491 1.27974 1.22558 1.01556 0.98863 1.00647 1.21381 0.95377 0.82187 0.76992 1.92998 1.82305 1.54448 1.88231 1.92965 1.91079 1.92814 1.41176 1.23170 1.00403 0.92225 1.00630 1.23046 0.88821 1.01014 1.03386 1.22409 0.81037 0.99811 0.94275 0.90285 1.20245 0.99833 0.85843 0.92354 0.92150 0.89642 0.96390 0.92347 0.92011 0.89792 0.90399 0.86164 0.86679 0.86772 0.87544 0.86340 0.96426 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.37 12.35 55.49 0.69 -26.68 16 2 C -0.02 -0.71 4.65 -17.43 -0.08 -0.80 16 3 Si 1.06 25.90 29.99 -169.99 -5.10 20.80 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.34 -9.72 9.41 -15.06 -0.14 -9.86 16 8 H 0.06 1.67 7.89 -52.49 -0.41 1.26 16 9 N -0.59 -14.65 2.87 -175.17 -0.50 -15.16 16 10 C 0.15 3.34 4.62 -4.17 -0.02 3.32 16 11 C -0.12 -2.01 5.68 -26.85 -0.15 -2.17 16 12 C -0.11 -1.48 4.57 -90.31 -0.41 -1.89 16 13 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 14 C 0.08 0.93 5.44 -11.54 -0.06 0.86 16 15 N -0.63 -10.15 3.29 -187.68 -0.62 -10.76 16 16 C 0.59 10.57 7.58 -10.99 -0.08 10.49 16 17 O -0.51 -11.36 15.50 5.56 0.09 -11.27 16 18 C -0.23 -3.28 2.34 -155.66 -0.36 -3.64 16 19 C 0.29 3.53 5.25 37.16 0.19 3.73 16 20 F -0.20 -2.62 17.29 2.25 0.04 -2.58 16 21 F -0.20 -2.35 15.92 2.25 0.04 -2.32 16 22 C -0.13 -1.63 9.62 -26.73 -0.26 -1.89 16 23 C -0.13 -1.61 9.69 -26.73 -0.26 -1.87 16 24 C 0.13 2.13 4.03 -77.67 -0.31 1.82 16 25 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 26 C 0.14 3.14 6.16 -5.43 -0.03 3.10 16 27 H 0.27 7.98 6.76 -40.82 -0.28 7.71 16 28 H 0.09 2.19 6.11 -51.93 -0.32 1.87 16 29 H 0.02 0.40 7.95 -51.93 -0.41 -0.01 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.15 7.68 -51.93 -0.40 0.75 16 32 H 0.08 0.73 8.10 -51.92 -0.42 0.31 16 33 H 0.08 0.80 7.22 -51.93 -0.37 0.43 16 34 H 0.12 1.23 4.12 -51.93 -0.21 1.02 16 35 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 36 H 0.11 1.23 7.22 -51.93 -0.38 0.86 16 37 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.12 1.67 7.67 -51.93 -0.40 1.27 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 1.75 6.45 -51.93 -0.34 1.41 16 LS Contribution 323.56 15.07 4.88 4.88 Total: -1.00 -33.24 323.56 -7.75 -40.98 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.27 Total: 0.91 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -1.99 Total: 1.20 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.44 Total: -52.60 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 0.07 Total: -4.90 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -5.10 Total: 20.80 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.24 -7.75 -40.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084342273.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.888 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds