Wall clock time and date at job start Fri Apr 10 2020 20:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00011 * 2 1 4 4 H 1.48499 * 109.47008 * 269.99848 * 3 2 1 5 5 H 1.48502 * 109.46908 * 30.00062 * 3 2 1 6 6 H 1.48501 * 109.46953 * 149.99763 * 3 2 1 7 7 C 1.37879 * 120.00179 * 180.02562 * 2 1 3 8 8 C 1.51273 * 120.85198 * 180.02562 * 7 2 1 9 9 C 1.53088 * 108.49534 * 231.33385 * 8 7 2 10 10 C 1.52965 * 109.47453 * 305.31351 * 9 8 7 11 11 H 1.09002 * 109.41499 * 303.56866 * 10 9 8 12 12 N 1.46499 * 109.41221 * 183.71053 * 10 9 8 13 13 C 1.34776 * 119.99963 * 84.85835 * 12 10 9 14 14 O 1.21597 * 120.00123 * 0.02562 * 13 12 10 15 15 C 1.47584 * 120.00067 * 179.97438 * 13 12 10 16 16 C 1.36470 * 125.92211 * 180.02562 * 15 13 12 17 17 N 1.36190 * 107.01615 * 179.97438 * 16 15 13 18 18 C 1.36669 * 132.44259 * 179.97438 * 17 16 15 19 19 C 1.35472 * 119.10126 * 179.97438 * 18 17 16 20 20 C 1.40302 * 119.35687 * 0.02562 * 19 18 17 21 21 N 1.31141 * 120.41422 * 359.97438 * 20 19 18 22 22 C 1.34286 * 120.94474 * 359.97438 * 21 20 19 23 23 N 1.32210 * 131.66096 * 180.29745 * 22 21 20 24 24 C 1.52957 * 109.75768 * 63.63992 * 10 9 8 25 25 C 1.51272 * 120.84935 * 359.97438 * 7 2 1 26 26 H 0.97000 * 120.00271 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.62232 * 351.03883 * 8 7 2 28 28 H 1.08994 * 109.62759 * 111.41259 * 8 7 2 29 29 H 1.09004 * 109.38594 * 185.35385 * 9 8 7 30 30 H 1.08994 * 109.51013 * 65.35040 * 9 8 7 31 31 H 0.96998 * 120.00108 * 264.85878 * 12 10 9 32 32 H 1.08007 * 126.49334 * 359.94376 * 16 15 13 33 33 H 1.07999 * 120.45329 * 359.97438 * 18 17 16 34 34 H 1.08006 * 120.32345 * 180.02562 * 19 18 17 35 35 H 1.08006 * 119.79673 * 179.97438 * 20 19 18 36 36 H 1.09005 * 109.48472 * 56.42044 * 24 10 9 37 37 H 1.09002 * 109.48310 * 176.44217 * 24 10 9 38 38 H 1.09000 * 109.62600 * 8.95852 * 25 7 2 39 39 H 1.09004 * 109.78185 * 248.48578 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 6 3.5171 -1.2165 0.0000 9 6 3.9897 -2.1299 -1.1340 10 6 3.3403 -3.5067 -0.9840 11 1 3.5740 -3.9123 0.0004 12 7 3.8609 -4.4057 -2.0170 13 6 5.0169 -5.0680 -1.8138 14 8 5.6277 -4.9198 -0.7729 15 6 5.5410 -5.9741 -2.8542 16 6 6.6931 -6.7014 -2.7762 17 7 6.8039 -7.3987 -3.9408 18 6 7.7445 -8.2746 -4.4055 19 6 7.5831 -8.8248 -5.6329 20 6 6.4572 -8.4831 -6.3972 21 7 5.5683 -7.6400 -5.9296 22 6 5.7134 -7.0870 -4.7145 23 7 4.9611 -6.2324 -4.0424 24 6 1.8234 -3.3823 -1.1356 25 6 1.2677 -2.5152 -0.0005 26 1 -0.4850 0.8400 -0.0004 27 1 3.8983 -0.2077 -0.1591 28 1 3.8773 -1.5973 0.9557 29 1 5.0739 -2.2324 -1.0880 30 1 3.7056 -1.6965 -2.0928 31 1 3.3735 -4.5242 -2.8473 32 1 7.3861 -6.7200 -1.9480 33 1 8.6047 -8.5249 -3.8024 34 1 8.3141 -9.5197 -6.0194 35 1 6.3217 -8.9172 -7.3769 36 1 1.5906 -2.9192 -2.0946 37 1 1.3711 -4.3730 -1.0911 38 1 0.2036 -2.3409 -0.1600 39 1 1.4169 -3.0208 0.9535 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150839430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:07 Heat of formation + Delta-G solvation = 61.197938 kcal Electronic energy + Delta-G solvation = -23333.763491 eV Core-core repulsion = 19856.524929 eV Total energy + Delta-G solvation = -3477.238562 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.35987 -39.58089 -38.29739 -36.63076 -35.01222 -33.64635 -31.79478 -31.16049 -29.69436 -29.60578 -27.41849 -25.46901 -23.71507 -23.36286 -21.86578 -21.39715 -20.02256 -19.47792 -18.71473 -17.97904 -17.12400 -16.72351 -16.24942 -15.76254 -15.53575 -14.79464 -14.54133 -14.39512 -14.31724 -13.71910 -13.48795 -13.12173 -12.79028 -12.66735 -12.29875 -12.11747 -12.00419 -11.64129 -10.96033 -10.94317 -10.77934 -10.68097 -10.29172 -10.13443 -9.93815 -9.83595 -9.55488 -9.54277 -8.95774 -8.81144 -8.58471 -8.42388 -8.25314 -6.06011 -3.96355 0.02514 0.61975 1.83457 1.91123 3.07256 3.08419 3.31205 3.39814 3.42644 3.50042 3.60105 3.87991 4.04039 4.27769 4.43141 4.57219 4.82837 4.99930 5.10192 5.15068 5.22777 5.66547 5.77224 5.93033 6.01159 6.08189 6.26234 6.53078 6.55034 6.78692 6.81157 6.94936 7.02353 7.08800 7.14471 7.27418 7.47126 7.49469 7.70022 7.76835 7.82894 7.99991 8.42833 8.51891 9.00902 9.59202 11.03615 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.034079 B = 0.002899 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.425499 B = 9657.609653 C = 9826.284229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.488 4.488 8 C -0.013 4.013 9 C -0.114 4.114 10 C 0.153 3.847 11 H 0.081 0.919 12 N -0.701 5.701 13 C 0.593 3.407 14 O -0.538 6.538 15 C 0.031 3.969 16 C -0.018 4.018 17 N -0.403 5.403 18 C 0.113 3.887 19 C -0.206 4.206 20 C 0.171 3.829 21 N -0.430 5.430 22 C 0.375 3.625 23 N -0.440 5.440 24 C -0.115 4.115 25 C 0.013 3.987 26 H 0.264 0.736 27 H 0.031 0.969 28 H 0.020 0.980 29 H 0.037 0.963 30 H 0.052 0.948 31 H 0.405 0.595 32 H 0.201 0.799 33 H 0.178 0.822 34 H 0.167 0.833 35 H 0.184 0.816 36 H 0.056 0.944 37 H 0.037 0.963 38 H 0.061 0.939 39 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.504 -19.000 -11.921 27.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.192 1.192 7 C -0.508 4.508 8 C -0.051 4.051 9 C -0.153 4.153 10 C 0.051 3.949 11 H 0.099 0.901 12 N -0.349 5.349 13 C 0.376 3.624 14 O -0.415 6.415 15 C -0.104 4.104 16 C -0.153 4.153 17 N -0.080 5.080 18 C -0.018 4.018 19 C -0.229 4.229 20 C -0.018 4.018 21 N -0.142 5.142 22 C 0.026 3.974 23 N -0.164 5.164 24 C -0.153 4.153 25 C -0.024 4.024 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.038 0.962 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.240 0.760 32 H 0.218 0.782 33 H 0.195 0.805 34 H 0.184 0.816 35 H 0.201 0.799 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 15.146 -17.978 -11.680 26.250 hybrid contribution 1.761 0.185 0.096 1.774 sum 16.907 -17.793 -11.585 27.142 Atomic orbital electron populations 1.69833 1.06141 1.26906 1.49948 1.24838 0.94708 0.98560 0.94555 0.86660 0.80000 0.83290 0.78433 1.20441 1.21686 1.19153 1.20060 0.89389 0.91482 1.49820 1.19692 0.96566 0.95008 0.93845 1.21897 0.97304 0.95112 1.00965 1.21153 0.94724 0.88923 0.90127 0.90117 1.46283 1.22676 1.44212 1.21745 1.16831 0.81650 0.79318 0.84562 1.90807 1.58840 1.65496 1.26361 1.21018 0.94312 1.01142 0.93879 1.22647 1.02761 0.99555 0.90323 1.43904 1.19078 1.29653 1.15413 1.22266 0.93267 0.89854 0.96414 1.21850 1.02002 1.04577 0.94441 1.23383 0.88064 0.90600 0.99763 1.67981 1.28677 1.09724 1.07778 1.21912 0.85462 0.99420 0.90636 1.70831 1.26757 1.14330 1.04481 1.21949 0.92110 0.98787 1.02480 1.19344 0.98731 0.92730 0.91637 0.92621 0.95085 0.96169 0.94428 0.92877 0.76038 0.78188 0.80525 0.81598 0.79886 0.92531 0.94449 0.92048 0.97516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 12.73 55.43 0.71 -25.16 16 2 C 0.08 2.10 5.46 -17.82 -0.10 2.01 16 3 Si 0.89 21.56 27.27 -169.99 -4.64 16.93 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.32 6.46 56.52 0.37 -5.95 16 7 C -0.49 -13.09 5.51 -98.92 -0.55 -13.64 16 8 C -0.01 -0.32 5.59 -27.56 -0.15 -0.47 16 9 C -0.11 -2.50 5.49 -26.70 -0.15 -2.64 16 10 C 0.15 3.17 2.35 -67.97 -0.16 3.01 16 11 H 0.08 1.79 7.57 -51.93 -0.39 1.39 16 12 N -0.70 -12.78 5.07 -54.87 -0.28 -13.06 16 13 C 0.59 10.69 7.78 -12.45 -0.10 10.60 16 14 O -0.54 -10.90 16.53 5.28 0.09 -10.81 16 15 C 0.03 0.48 6.94 -83.43 -0.58 -0.10 16 16 C -0.02 -0.21 11.47 -16.25 -0.19 -0.40 16 17 N -0.40 -4.21 2.93 -64.14 -0.19 -4.40 16 18 C 0.11 0.62 11.05 -16.38 -0.18 0.44 16 19 C -0.21 -0.76 10.06 -39.79 -0.40 -1.16 16 20 C 0.17 1.03 11.27 -17.07 -0.19 0.84 16 21 N -0.43 -4.97 10.48 -13.67 -0.14 -5.12 16 22 C 0.37 5.11 8.90 -322.42 -2.87 2.24 16 23 N -0.44 -7.08 11.01 -11.03 -0.12 -7.20 16 24 C -0.11 -2.46 5.40 -26.62 -0.14 -2.61 16 25 C 0.01 0.34 5.97 -27.47 -0.16 0.17 16 26 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.03 0.74 4.78 -51.93 -0.25 0.50 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.40 6.88 8.30 -40.82 -0.34 6.55 16 32 H 0.20 1.83 8.06 -52.48 -0.42 1.41 16 33 H 0.18 0.27 8.06 -52.49 -0.42 -0.16 16 34 H 0.17 -0.07 8.06 -52.48 -0.42 -0.50 16 35 H 0.18 0.35 8.06 -52.48 -0.42 -0.07 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.67 7.07 -51.93 -0.37 1.31 16 39 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 LS Contribution 327.08 15.07 4.93 4.93 Total: -1.00 -34.78 327.08 -10.31 -45.09 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -4.75 Total: 0.52 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -5.92 Total: -1.73 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -0.03 Total: -54.93 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.64 Total: 16.93 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.78 -10.31 -45.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150839430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.290 kcal (2) G-P(sol) polarization free energy of solvation -34.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds