Wall clock time and date at job start Fri Apr 10 2020 20:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 119.99701 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 119.99955 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 90.00121 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99818 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00051 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21596 * 119.99994 * 359.97438 * 14 13 3 16 16 C 1.47507 * 119.99748 * 179.97438 * 14 13 3 17 17 C 1.36625 * 125.76716 * 179.71138 * 16 14 13 18 18 N 1.35072 * 106.79479 * 179.90346 * 17 16 14 19 19 C 1.40221 * 126.61558 * 180.15429 * 18 17 16 20 20 C 1.38831 * 120.06401 * 359.97438 * 19 18 17 21 21 C 1.38120 * 119.93521 * 179.72381 * 20 19 18 22 22 C 1.38279 * 120.06543 * 0.55384 * 21 20 19 23 23 C 1.38275 * 120.13137 * 359.72269 * 22 21 20 24 24 C 1.38127 * 120.06699 * 0.02562 * 23 22 21 25 25 N 1.40217 * 106.77356 * 0.35925 * 18 17 16 26 26 N 1.28748 * 108.38682 * 359.76926 * 25 18 17 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 31 31 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 32 32 H 0.96997 * 120.00141 * 179.97438 * 8 7 5 33 33 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 34 34 H 1.07996 * 126.59926 * 0.04158 * 17 16 14 35 35 H 1.08004 * 120.03207 * 359.97438 * 20 19 18 36 36 H 1.08001 * 119.96835 * 180.27528 * 21 20 19 37 37 H 1.07995 * 119.93626 * 179.74712 * 22 21 20 38 38 H 1.08002 * 119.97084 * 180.02562 * 23 22 21 39 39 H 1.07995 * 120.03426 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3416 2.6319 -0.4320 16 6 0.0451 3.3242 -2.6273 17 6 -1.1550 3.9287 -2.8741 18 7 -1.1002 4.4041 -4.1372 19 6 -2.1116 5.1017 -4.8130 20 6 -3.3182 5.3646 -4.1787 21 6 -4.3105 6.0569 -4.8448 22 6 -4.1074 6.4781 -6.1462 23 6 -2.9088 6.2127 -6.7825 24 6 -1.9107 5.5253 -6.1197 25 7 0.1614 4.0613 -4.6442 26 7 0.8082 3.4272 -3.7291 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 5.8770 0.4827 2.1133 33 1 2.2720 2.1231 -1.9978 34 1 -1.9865 4.0126 -2.1900 35 1 -3.4793 5.0317 -3.1640 36 1 -5.2477 6.2657 -4.3504 37 1 -4.8862 7.0157 -6.6664 38 1 -2.7527 6.5432 -7.7988 39 1 -0.9747 5.3186 -6.6171 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273870708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:10 Heat of formation + Delta-G solvation = 96.010962 kcal Electronic energy + Delta-G solvation = -23224.756056 eV Core-core repulsion = 19749.027100 eV Total energy + Delta-G solvation = -3475.728956 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.47743 -39.69708 -38.92718 -35.34843 -34.86904 -32.37215 -31.85801 -31.55610 -30.81656 -29.88158 -27.51720 -24.65475 -24.22969 -22.87726 -22.32811 -21.66815 -20.58825 -19.66760 -18.92276 -17.35626 -16.58551 -16.26052 -16.00485 -15.70403 -15.37117 -15.22070 -14.70572 -14.37708 -14.26701 -13.98773 -13.51198 -13.39282 -12.96975 -12.46786 -12.37371 -12.22085 -11.92267 -11.78661 -11.62312 -11.40890 -11.34471 -11.06809 -10.88893 -10.61341 -9.90470 -9.68221 -9.57696 -9.56080 -9.33213 -9.19463 -8.83429 -8.72235 -8.06819 -6.16977 -4.19471 0.16239 0.77671 1.51126 1.78086 1.82981 3.23023 3.25955 3.37646 3.42076 3.70542 3.72542 4.07687 4.20948 4.34042 4.34514 4.54449 4.64532 4.79250 4.81636 4.98583 5.12919 5.15234 5.16010 5.44661 5.71328 5.78437 5.90577 5.96984 5.99008 6.04484 6.10992 6.19352 6.52371 6.67838 6.70585 6.84305 6.96058 7.25963 7.30038 7.51824 7.80585 8.18572 8.54689 8.77451 8.89701 9.42908 10.95161 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.035611 B = 0.002998 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.083630 B = 9336.265834 C = 9799.130288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.242 3.758 4 H 0.052 0.948 5 C -0.535 4.535 6 H 0.082 0.918 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.295 1.295 12 H -0.259 1.259 13 N -0.679 5.679 14 C 0.589 3.411 15 O -0.547 6.547 16 C -0.079 4.079 17 C 0.084 3.916 18 N -0.318 5.318 19 C 0.140 3.860 20 C -0.127 4.127 21 C -0.096 4.096 22 C -0.119 4.119 23 C -0.098 4.098 24 C -0.107 4.107 25 N -0.062 5.062 26 N -0.191 5.191 27 H 0.032 0.968 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.267 0.733 33 H 0.404 0.596 34 H 0.206 0.794 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.389 9.817 -14.319 26.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.139 3.861 4 H 0.070 0.930 5 C -0.573 4.573 6 H 0.100 0.900 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.184 1.184 13 N -0.326 5.326 14 C 0.371 3.629 15 O -0.425 6.425 16 C -0.217 4.217 17 C -0.068 4.068 18 N -0.097 5.097 19 C 0.048 3.952 20 C -0.148 4.148 21 C -0.114 4.114 22 C -0.138 4.138 23 C -0.117 4.117 24 C -0.127 4.127 25 N -0.041 5.041 26 N -0.065 5.065 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.238 0.762 34 H 0.223 0.777 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.149 0.851 38 H 0.154 0.846 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -19.741 9.754 -14.677 26.463 hybrid contribution -0.774 -0.495 1.157 1.477 sum -20.515 9.259 -13.521 26.257 Atomic orbital electron populations 1.21883 0.96967 0.99118 1.02196 1.22300 0.94368 0.99840 1.01310 1.19240 0.95881 0.88563 0.82405 0.93016 1.21056 0.88486 1.39790 1.07930 0.89988 1.24830 0.94870 0.95159 0.97638 1.69869 1.08684 1.44497 1.29777 0.86909 0.80986 0.79983 0.80891 1.20220 1.22196 1.18386 1.46040 1.14142 1.54104 1.18322 1.16713 0.83221 0.78789 0.84149 1.90777 1.51968 1.61105 1.38655 1.21906 0.92944 1.09920 0.96885 1.23354 1.00772 0.95927 0.86779 1.47646 1.13320 1.38328 1.10397 1.17653 0.86899 0.97568 0.93049 1.21010 0.91771 1.00935 1.01066 1.21045 0.98711 0.96917 0.94755 1.21344 0.97637 0.99740 0.95033 1.21127 0.92775 0.97451 1.00333 1.21012 1.01044 0.98371 0.92250 1.82046 0.87521 1.16586 1.17911 1.74699 1.24162 1.08847 0.98798 0.94891 0.93023 0.92770 0.92614 0.92102 0.92294 0.76158 0.77715 0.84631 0.84587 0.85091 0.84645 0.84014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.51 37.16 0.32 -2.57 16 2 C -0.14 -3.13 5.11 -26.73 -0.14 -3.26 16 3 C 0.24 5.82 1.83 -69.08 -0.13 5.69 16 4 H 0.05 1.34 6.64 -51.93 -0.34 1.00 16 5 C -0.53 -14.69 9.31 -34.44 -0.32 -15.01 16 6 H 0.08 2.40 7.98 -52.48 -0.42 1.98 16 7 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 8 N -0.89 -26.68 13.96 55.43 0.77 -25.91 16 9 Si 0.88 21.74 24.41 -169.99 -4.15 17.59 16 10 H -0.28 -6.57 6.83 56.52 0.39 -6.19 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.26 -6.26 6.53 56.52 0.37 -5.89 16 13 N -0.68 -14.30 5.02 -55.98 -0.28 -14.58 16 14 C 0.59 11.51 6.38 -12.48 -0.08 11.43 16 15 O -0.55 -11.53 14.00 5.28 0.07 -11.45 16 16 C -0.08 -1.31 6.99 -83.54 -0.58 -1.89 16 17 C 0.08 1.11 10.60 -16.71 -0.18 0.93 16 18 N -0.32 -4.06 3.82 -10.42 -0.04 -4.10 16 19 C 0.14 1.40 6.70 -83.58 -0.56 0.84 16 20 C -0.13 -0.96 9.47 -39.41 -0.37 -1.34 16 21 C -0.10 -0.55 10.04 -39.61 -0.40 -0.94 16 22 C -0.12 -0.63 10.04 -39.55 -0.40 -1.03 16 23 C -0.10 -0.61 10.04 -39.61 -0.40 -1.00 16 24 C -0.11 -0.93 9.68 -39.40 -0.38 -1.31 16 25 N -0.06 -0.95 13.12 60.35 0.79 -0.15 16 26 N -0.19 -3.25 12.03 32.85 0.40 -2.85 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 1.01 5.64 -51.93 -0.29 0.72 16 29 H 0.05 1.12 7.84 -51.93 -0.41 0.71 16 30 H 0.06 1.30 3.21 -51.93 -0.17 1.14 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.40 8.13 8.22 -40.82 -0.34 7.79 16 34 H 0.21 2.01 7.13 -52.49 -0.37 1.64 16 35 H 0.14 0.82 6.81 -52.48 -0.36 0.47 16 36 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 37 H 0.13 0.37 8.06 -52.49 -0.42 -0.05 16 38 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 39 H 0.14 1.25 7.73 -52.49 -0.41 0.85 16 LS Contribution 326.95 15.07 4.93 4.93 Total: -1.00 -32.58 326.95 -5.62 -38.20 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -4.40 Total: 5.65 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -3.71 Total: -7.32 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: 1.64 Total: -47.60 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.07 Total: -11.45 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.15 Total: 17.59 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.58 -5.62 -38.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273870708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.212 kcal (2) G-P(sol) polarization free energy of solvation -32.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds