Wall clock time and date at job start Fri Apr 10 2020 20:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 119.99701 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 119.99955 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 90.00121 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99818 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00051 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21596 * 119.99994 * 359.97438 * 14 13 3 16 16 C 1.47507 * 119.99748 * 179.97438 * 14 13 3 17 17 C 1.36625 * 125.76716 * 179.71138 * 16 14 13 18 18 N 1.35072 * 106.79479 * 179.90346 * 17 16 14 19 19 C 1.40221 * 126.61558 * 180.15429 * 18 17 16 20 20 C 1.38831 * 120.06401 * 359.97438 * 19 18 17 21 21 C 1.38120 * 119.93521 * 179.72381 * 20 19 18 22 22 C 1.38279 * 120.06543 * 0.55384 * 21 20 19 23 23 C 1.38275 * 120.13137 * 359.72269 * 22 21 20 24 24 C 1.38127 * 120.06699 * 0.02562 * 23 22 21 25 25 N 1.40217 * 106.77356 * 0.35925 * 18 17 16 26 26 N 1.28748 * 108.38682 * 359.76926 * 25 18 17 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 31 31 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 32 32 H 0.96997 * 120.00141 * 179.97438 * 8 7 5 33 33 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 34 34 H 1.07996 * 126.59926 * 0.04158 * 17 16 14 35 35 H 1.08004 * 120.03207 * 359.97438 * 20 19 18 36 36 H 1.08001 * 119.96835 * 180.27528 * 21 20 19 37 37 H 1.07995 * 119.93626 * 179.74712 * 22 21 20 38 38 H 1.08002 * 119.97084 * 180.02562 * 23 22 21 39 39 H 1.07995 * 120.03426 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3416 2.6319 -0.4320 16 6 0.0451 3.3242 -2.6273 17 6 -1.1550 3.9287 -2.8741 18 7 -1.1002 4.4041 -4.1372 19 6 -2.1116 5.1017 -4.8130 20 6 -3.3182 5.3646 -4.1787 21 6 -4.3105 6.0569 -4.8448 22 6 -4.1074 6.4781 -6.1462 23 6 -2.9088 6.2127 -6.7825 24 6 -1.9107 5.5253 -6.1197 25 7 0.1614 4.0613 -4.6442 26 7 0.8082 3.4272 -3.7291 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 5.8770 0.4827 2.1133 33 1 2.2720 2.1231 -1.9978 34 1 -1.9865 4.0126 -2.1900 35 1 -3.4793 5.0317 -3.1640 36 1 -5.2477 6.2657 -4.3504 37 1 -4.8862 7.0157 -6.6664 38 1 -2.7527 6.5432 -7.7988 39 1 -0.9747 5.3186 -6.6171 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273870708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:09 Heat of formation + Delta-G solvation = 73.200038 kcal Electronic energy + Delta-G solvation = -23225.745212 eV Core-core repulsion = 19749.027100 eV Total energy + Delta-G solvation = -3476.718112 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.57269 -40.71530 -40.11203 -37.13906 -35.77835 -34.39121 -33.34701 -32.46801 -31.73471 -30.75785 -29.39651 -25.72607 -25.26144 -24.44905 -23.47992 -22.51399 -22.02423 -21.20923 -20.08517 -18.83091 -17.80990 -17.53212 -17.32333 -16.92546 -16.56116 -16.24322 -16.06812 -15.76067 -15.13201 -15.07668 -14.88576 -14.49823 -14.28903 -14.00679 -13.73383 -13.64358 -13.50238 -12.97320 -12.84270 -12.74082 -12.43334 -12.39010 -12.31235 -12.07137 -11.83135 -11.41410 -11.24210 -11.03211 -10.84616 -10.66649 -10.08251 -9.83506 -9.55916 -8.36386 -6.43250 -0.64170 0.27746 0.50962 0.73342 0.85536 1.30246 1.37441 1.48113 2.23813 2.27324 2.28961 2.70133 2.98830 3.06669 3.26486 3.66304 3.77461 3.86877 4.01214 4.19277 4.25275 4.32705 4.34715 4.37360 4.48417 4.51543 4.64024 4.84856 4.97459 5.02514 5.13021 5.23786 5.24389 5.29272 5.38988 5.45675 5.47202 5.53316 5.59814 5.89749 6.11719 6.56814 6.62770 6.85799 7.15321 7.31177 8.79282 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.035611 B = 0.002998 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.083630 B = 9336.265834 C = 9799.130288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.139 4.139 3 C 0.250 3.750 4 H 0.034 0.966 5 C -0.538 4.538 6 H 0.049 0.951 7 C 0.027 3.973 8 N -0.936 5.936 9 Si 0.941 3.059 10 H -0.258 1.258 11 H -0.293 1.293 12 H -0.252 1.252 13 N -0.688 5.688 14 C 0.596 3.404 15 O -0.562 6.562 16 C -0.106 4.106 17 C 0.106 3.894 18 N -0.302 5.302 19 C 0.097 3.903 20 C -0.127 4.127 21 C -0.095 4.095 22 C -0.106 4.106 23 C -0.100 4.100 24 C -0.121 4.121 25 N -0.080 5.080 26 N -0.218 5.218 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.271 0.729 33 H 0.405 0.595 34 H 0.240 0.760 35 H 0.151 0.849 36 H 0.167 0.833 37 H 0.164 0.836 38 H 0.159 0.841 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.480 10.486 -14.900 30.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.177 4.177 3 C 0.146 3.854 4 H 0.052 0.948 5 C -0.576 4.576 6 H 0.067 0.933 7 C -0.172 4.172 8 N -0.575 5.575 9 Si 0.768 3.232 10 H -0.184 1.184 11 H -0.220 1.220 12 H -0.176 1.176 13 N -0.335 5.335 14 C 0.380 3.620 15 O -0.442 6.442 16 C -0.245 4.245 17 C -0.049 4.049 18 N -0.080 5.080 19 C 0.007 3.993 20 C -0.147 4.147 21 C -0.113 4.113 22 C -0.125 4.125 23 C -0.119 4.119 24 C -0.141 4.141 25 N -0.058 5.058 26 N -0.091 5.091 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.240 0.760 34 H 0.257 0.743 35 H 0.168 0.832 36 H 0.184 0.816 37 H 0.181 0.819 38 H 0.176 0.824 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -23.856 10.446 -15.317 30.213 hybrid contribution 0.357 -0.502 1.137 1.293 sum -23.499 9.944 -14.179 29.191 Atomic orbital electron populations 1.21775 0.94769 1.00835 1.01804 1.22220 0.96285 0.98113 1.01101 1.18914 0.93321 0.89929 0.83223 0.94787 1.21279 0.90412 1.38893 1.07025 0.93285 1.25626 0.95882 0.95749 0.99985 1.69994 1.10510 1.46071 1.30890 0.85959 0.79480 0.79964 0.77842 1.18412 1.22018 1.17591 1.45913 1.15174 1.54970 1.17428 1.16908 0.82203 0.77937 0.84961 1.90749 1.52167 1.61657 1.39588 1.21537 0.94639 1.12300 0.96069 1.23759 1.00222 0.93848 0.87060 1.47796 1.12938 1.37071 1.10185 1.18090 0.87380 0.99870 0.94000 1.21311 0.90987 1.00597 1.01828 1.21474 0.99206 0.95671 0.94952 1.21811 0.97640 0.98116 0.94892 1.21444 0.92477 0.96613 1.01330 1.21128 1.01548 0.99205 0.92186 1.81964 0.88845 1.17140 1.17886 1.74661 1.25209 1.09928 0.99273 0.92084 0.93017 0.93531 0.93305 0.91776 0.92028 0.75980 0.74339 0.83172 0.81566 0.81888 0.82385 0.85250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.12 8.51 71.98 0.61 -4.51 16 2 C -0.14 -6.09 5.11 30.60 0.16 -5.94 16 3 C 0.25 12.19 1.83 44.25 0.08 12.27 16 4 H 0.03 1.79 6.64 -2.39 -0.02 1.77 16 5 C -0.54 -30.58 9.31 25.60 0.24 -30.34 16 6 H 0.05 3.03 7.98 -2.91 -0.02 3.01 16 7 C 0.03 1.57 5.45 84.66 0.46 2.03 16 8 N -0.94 -57.62 13.96 21.45 0.30 -57.32 16 9 Si 0.94 44.93 24.41 68.60 1.67 46.61 16 10 H -0.26 -11.58 6.83 99.48 0.68 -10.90 16 11 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 12 H -0.25 -11.64 6.53 99.48 0.65 -10.99 16 13 N -0.69 -29.70 5.02 -449.28 -2.25 -31.95 16 14 C 0.60 23.39 6.38 86.69 0.55 23.94 16 15 O -0.56 -23.36 14.00 -4.02 -0.06 -23.42 16 16 C -0.11 -3.55 6.99 40.82 0.29 -3.27 16 17 C 0.11 2.65 10.60 83.82 0.89 3.54 16 18 N -0.30 -7.51 3.82 -186.89 -0.71 -8.22 16 19 C 0.10 1.80 6.70 38.08 0.25 2.06 16 20 C -0.13 -1.55 9.47 22.38 0.21 -1.34 16 21 C -0.09 -0.68 10.04 22.25 0.22 -0.46 16 22 C -0.11 -0.67 10.04 22.29 0.22 -0.45 16 23 C -0.10 -0.96 10.04 22.25 0.22 -0.74 16 24 C -0.12 -1.97 9.68 22.38 0.22 -1.75 16 25 N -0.08 -2.48 13.12 37.02 0.49 -2.00 16 26 N -0.22 -7.61 12.03 -49.98 -0.60 -8.21 16 27 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.05 1.95 5.64 -2.39 -0.01 1.94 16 29 H 0.05 1.83 7.84 -2.38 -0.02 1.81 16 30 H 0.05 2.20 3.21 -2.39 -0.01 2.20 16 31 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 33 H 0.41 17.13 8.22 -92.71 -0.76 16.37 16 34 H 0.24 4.06 7.13 -2.91 -0.02 4.04 16 35 H 0.15 1.30 6.81 -2.91 -0.02 1.28 16 36 H 0.17 0.22 8.06 -2.91 -0.02 0.19 16 37 H 0.16 0.03 8.06 -2.91 -0.02 0.01 16 38 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 39 H 0.13 2.34 7.73 -2.91 -0.02 2.32 16 Total: -1.00 -73.08 326.95 3.72 -69.36 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.25 Total: 20.10 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 4.63 Total: -4.96 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -2.78 Total: -107.70 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.06 Total: -23.42 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.67 Total: 46.61 kcal Total: -73.08 3.72 -69.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273870708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.560 kcal (2) G-P(sol) polarization free energy of solvation -73.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds