Wall clock time and date at job start Fri Apr 10 2020 20:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00388 * 2 1 4 4 H 1.48493 * 109.47314 * 270.00122 * 3 2 1 5 5 H 1.48500 * 109.46983 * 30.00034 * 3 2 1 6 6 H 1.48500 * 109.47170 * 149.99698 * 3 2 1 7 7 C 1.38821 * 119.99636 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99418 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99835 * 359.97438 * 7 2 1 10 10 C 1.47423 * 125.64990 * 345.33031 * 9 7 2 11 11 C 1.54915 * 104.82952 * 204.17511 * 10 9 7 12 12 C 1.55155 * 101.58208 * 322.99149 * 11 10 9 13 13 C 1.47027 * 125.64420 * 165.38765 * 9 7 2 14 14 H 1.08999 * 110.01039 * 59.39989 * 13 9 7 15 15 C 1.52998 * 109.87761 * 298.30880 * 13 9 7 16 16 N 1.46505 * 109.46772 * 178.18230 * 15 13 9 17 17 C 1.34777 * 120.00020 * 174.80605 * 16 15 13 18 18 O 1.21274 * 120.00119 * 0.02562 * 17 16 15 19 19 C 1.50695 * 119.99829 * 179.97438 * 17 16 15 20 20 H 1.09001 * 112.83085 * 309.66538 * 19 17 16 21 21 C 1.53525 * 113.58590 * 178.55710 * 19 17 16 22 22 C 1.51612 * 87.24177 * 245.40615 * 21 19 17 23 23 C 1.38378 * 147.52489 * 180.02562 * 22 21 19 24 24 C 1.38091 * 120.32725 * 179.97438 * 23 22 21 25 25 C 1.38243 * 119.95371 * 0.02583 * 24 23 22 26 26 C 1.38093 * 119.95657 * 359.97438 * 25 24 23 27 27 C 1.38247 * 120.40999 * 359.92531 * 26 25 24 28 28 H 0.97006 * 119.99703 * 0.02562 * 1 2 3 29 29 H 1.08997 * 110.36897 * 85.33625 * 10 9 7 30 30 H 1.09004 * 110.46026 * 323.06119 * 10 9 7 31 31 H 1.09003 * 110.99866 * 204.91395 * 11 10 9 32 32 H 1.09004 * 111.03475 * 81.08080 * 11 10 9 33 33 H 1.08996 * 110.72095 * 277.13765 * 12 11 10 34 34 H 1.09002 * 110.71556 * 153.86517 * 12 11 10 35 35 H 1.08996 * 109.47597 * 298.17703 * 15 13 9 36 36 H 1.08997 * 109.47366 * 58.18715 * 15 13 9 37 37 H 0.97003 * 119.99616 * 354.80563 * 16 15 13 38 38 H 1.08991 * 113.58753 * 359.97438 * 21 19 17 39 39 H 1.08998 * 113.58569 * 130.81579 * 21 19 17 40 40 H 1.08003 * 119.83594 * 359.97305 * 23 22 21 41 41 H 1.07998 * 120.01959 * 180.02562 * 24 23 22 42 42 H 1.08001 * 120.02497 * 180.02562 * 25 24 23 43 43 H 1.08000 * 119.83669 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1077 -2.5527 0.3034 11 6 -0.2466 -4.0214 0.7763 12 6 0.7645 -4.7445 -0.1521 13 6 1.8981 -3.7082 -0.3025 14 1 2.7027 -3.9346 0.3971 15 6 2.4339 -3.7274 -1.7354 16 7 3.0409 -5.0317 -2.0123 17 6 3.4885 -5.3174 -3.2511 18 8 3.3892 -4.4946 -4.1364 19 6 4.1134 -6.6588 -3.5357 20 1 4.8912 -6.9236 -2.8194 21 6 4.5389 -6.8401 -4.9996 22 6 3.4858 -7.9266 -5.0946 23 6 2.8564 -8.8769 -5.8793 24 6 1.8494 -9.6609 -5.3518 25 6 1.4659 -9.4972 -4.0338 26 6 2.0906 -8.5503 -3.2463 27 6 3.1009 -7.7633 -3.7670 28 1 -0.4850 0.8401 -0.0004 29 1 -0.7071 -2.3840 -0.5913 30 1 -0.4101 -1.8686 1.0963 31 1 -1.2594 -4.3900 0.6135 32 1 0.0409 -4.1243 1.8227 33 1 0.3117 -4.9639 -1.1189 34 1 1.1351 -5.6560 0.3171 35 1 1.6142 -3.5530 -2.4323 36 1 3.1838 -2.9453 -1.8534 37 1 3.1207 -5.6897 -1.3040 38 1 4.3283 -5.9731 -5.6255 39 1 5.5580 -7.2091 -5.1150 40 1 3.1543 -9.0061 -6.9094 41 1 1.3619 -10.4014 -5.9685 42 1 0.6787 -10.1100 -3.6199 43 1 1.7897 -8.4243 -2.2167 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028111446.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:41 Heat of formation + Delta-G solvation = 46.845919 kcal Electronic energy + Delta-G solvation = -23925.522644 eV Core-core repulsion = 20551.202075 eV Total energy + Delta-G solvation = -3374.320569 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.96946 -38.93290 -37.59978 -35.31239 -34.24321 -32.48530 -31.00518 -29.75019 -28.88151 -27.65876 -25.68059 -24.65976 -23.55921 -22.10671 -21.02308 -20.27617 -19.86393 -19.27699 -17.46605 -16.85064 -16.57525 -15.95719 -15.44771 -15.00201 -14.80233 -14.56682 -14.39993 -13.92236 -13.70432 -13.27160 -13.16986 -12.84060 -12.61861 -12.25759 -12.05215 -12.02156 -11.89240 -11.71367 -11.32734 -11.11521 -10.94442 -10.80220 -10.65685 -10.25492 -10.12131 -9.99414 -9.86223 -9.77862 -9.68115 -8.99457 -8.70383 -8.66298 -8.58351 -6.84876 -5.77714 -3.14410 1.10153 1.22800 2.74845 3.35709 3.40966 3.45778 3.46485 3.63146 4.01724 4.21181 4.31076 4.47970 4.86275 4.90969 4.93938 5.09336 5.32517 5.39435 5.40290 5.44365 5.49721 5.53963 5.61493 5.69632 5.79943 5.84521 5.95906 6.05219 6.12574 6.20680 6.23318 6.31566 6.44625 6.53048 6.55197 6.61303 6.69455 6.79954 6.80827 7.04942 7.50352 7.60125 7.76744 7.78158 8.24403 8.45291 9.16407 9.77041 10.44411 11.34339 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.021619 B = 0.003432 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.871264 B = 8156.595472 C = 9027.359385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.235 4.235 8 H 0.076 0.924 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.109 3.891 16 N -0.718 5.718 17 C 0.524 3.476 18 O -0.536 6.536 19 C -0.068 4.068 20 H 0.119 0.881 21 C -0.057 4.057 22 C -0.119 4.119 23 C -0.099 4.099 24 C -0.114 4.114 25 C -0.121 4.121 26 C -0.085 4.085 27 C -0.123 4.123 28 H 0.254 0.746 29 H 0.026 0.974 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.396 0.604 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.216 -20.277 -5.628 21.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.363 4.363 8 H 0.093 0.907 9 N -0.313 5.313 10 C 0.048 3.952 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.044 3.956 14 H 0.055 0.945 15 C -0.016 4.016 16 N -0.368 5.368 17 C 0.308 3.692 18 O -0.413 6.413 19 C -0.089 4.089 20 H 0.137 0.863 21 C -0.094 4.094 22 C -0.119 4.119 23 C -0.117 4.117 24 C -0.132 4.132 25 C -0.139 4.139 26 C -0.103 4.103 27 C -0.123 4.123 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.229 0.771 38 H 0.128 0.872 39 H 0.114 0.886 40 H 0.136 0.864 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.045 -19.391 -6.224 20.981 hybrid contribution 0.363 0.513 0.286 0.691 sum 5.408 -18.878 -5.938 20.515 Atomic orbital electron populations 1.69940 1.05037 1.25330 1.55786 1.24922 0.95683 0.97891 1.01340 0.86143 0.78705 0.83333 0.77729 1.21370 1.21640 1.20564 1.18983 0.90388 0.82180 1.44775 0.90653 1.44480 1.06399 1.00988 1.79433 1.21449 0.84793 0.90159 0.98831 1.23007 0.97552 0.99634 0.98532 1.22596 0.97136 0.96941 0.99694 1.21124 0.94509 0.88102 0.91896 0.94512 1.22261 0.97709 0.82418 0.99236 1.46099 1.61268 1.18695 1.10744 1.19956 0.78597 0.87758 0.82870 1.90705 1.56367 1.49242 1.45021 1.21573 0.96439 0.90976 0.99955 0.86285 1.21817 0.97076 0.96445 0.94081 1.22317 0.98018 0.96405 0.95159 1.20295 0.96445 0.95418 0.99543 1.21013 0.97155 0.99425 0.95638 1.20982 1.00124 0.98579 0.94222 1.20312 0.94831 0.94991 1.00209 1.21776 0.97241 0.96815 0.96470 0.93587 0.95630 0.90958 0.92362 0.92300 0.91861 0.92446 0.91604 0.91490 0.77096 0.87199 0.88603 0.86355 0.85659 0.85535 0.86178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.68 10.58 55.49 0.59 -26.09 16 2 C 0.00 -0.03 5.47 -17.43 -0.10 -0.12 16 3 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.23 -6.44 9.77 -15.06 -0.15 -6.58 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.59 -14.61 3.13 -162.57 -0.51 -15.12 16 10 C 0.17 4.12 5.41 -2.53 -0.01 4.10 16 11 C -0.15 -2.71 7.08 -24.58 -0.17 -2.89 16 12 C -0.13 -2.09 6.07 -24.90 -0.15 -2.24 16 13 C 0.15 2.99 3.23 -66.95 -0.22 2.77 16 14 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 15 C 0.11 2.11 5.07 -4.04 -0.02 2.09 16 16 N -0.72 -10.77 5.32 -60.30 -0.32 -11.10 16 17 C 0.52 8.21 7.37 -10.99 -0.08 8.13 16 18 O -0.54 -10.75 15.70 5.56 0.09 -10.66 16 19 C -0.07 -0.79 4.33 -92.23 -0.40 -1.19 16 20 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16 21 C -0.06 -0.63 7.77 -27.17 -0.21 -0.84 16 22 C -0.12 -1.39 7.49 -103.79 -0.78 -2.16 16 23 C -0.10 -1.02 10.03 -39.58 -0.40 -1.42 16 24 C -0.11 -1.07 10.04 -39.63 -0.40 -1.47 16 25 C -0.12 -1.16 10.04 -39.63 -0.40 -1.56 16 26 C -0.09 -0.92 10.02 -39.63 -0.40 -1.31 16 27 C -0.12 -1.45 6.99 -103.83 -0.73 -2.17 16 28 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 30 H 0.07 1.92 6.93 -51.93 -0.36 1.56 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.06 7.82 -51.93 -0.41 0.66 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.46 8.09 -51.93 -0.42 1.04 16 36 H 0.07 1.46 7.94 -51.93 -0.41 1.05 16 37 H 0.40 4.69 8.32 -40.82 -0.34 4.35 16 38 H 0.11 1.40 7.04 -51.93 -0.37 1.03 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 41 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 353.18 15.07 5.32 5.32 Total: -1.00 -32.67 353.18 -10.95 -43.63 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.50 Total: 3.78 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -4.60 Total: -6.86 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: -0.24 Total: -52.31 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.67 -10.95 -43.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028111446.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.473 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds