Wall clock time and date at job start Fri Apr 10 2020 20:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86808 * 120.00045 * 2 1 4 4 H 1.48495 * 109.46967 * 240.00241 * 3 2 1 5 5 H 1.48500 * 109.46789 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46619 * 120.00341 * 3 2 1 7 7 C 1.38816 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99672 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00039 * 0.02562 * 7 2 1 10 10 C 1.47431 * 125.64695 * 14.73034 * 9 7 2 11 11 C 1.54914 * 104.82774 * 155.89624 * 10 9 7 12 12 C 1.55150 * 101.58240 * 37.00974 * 11 10 9 13 13 C 1.47012 * 125.64806 * 194.76083 * 9 7 2 14 14 H 1.09005 * 110.01370 * 300.52345 * 13 9 7 15 15 C 1.53001 * 109.88847 * 61.61859 * 13 9 7 16 16 N 1.46496 * 109.47642 * 182.40331 * 15 13 9 17 17 C 1.34780 * 120.00035 * 185.13775 * 16 15 13 18 18 O 1.21282 * 119.99860 * 359.97438 * 17 16 15 19 19 C 1.50694 * 119.99938 * 179.97438 * 17 16 15 20 20 H 1.09000 * 112.83321 * 48.88279 * 19 17 16 21 21 C 1.53522 * 113.59149 * 179.97438 * 19 17 16 22 22 C 1.51611 * 87.33605 * 114.62754 * 21 19 17 23 23 C 1.38373 * 147.53138 * 180.02562 * 22 21 19 24 24 C 1.38093 * 120.32726 * 180.02562 * 23 22 21 25 25 C 1.38247 * 119.95581 * 0.02562 * 24 23 22 26 26 C 1.38583 * 120.03212 * 0.02562 * 25 24 23 27 27 C 1.38369 * 120.16359 * 359.97438 * 26 25 24 28 28 H 0.97006 * 120.00163 * 359.97438 * 1 2 3 29 29 H 1.08995 * 110.36610 * 37.05446 * 10 9 7 30 30 H 1.08999 * 110.45591 * 274.78011 * 10 9 7 31 31 H 1.08993 * 111.00182 * 278.93429 * 11 10 9 32 32 H 1.09001 * 111.03173 * 155.10021 * 11 10 9 33 33 H 1.09003 * 110.71814 * 206.13259 * 12 11 10 34 34 H 1.09006 * 110.87343 * 82.93275 * 12 11 10 35 35 H 1.08999 * 109.47051 * 62.39466 * 15 13 9 36 36 H 1.09006 * 109.46418 * 302.40041 * 15 13 9 37 37 H 0.96998 * 119.99718 * 5.12983 * 16 15 13 38 38 H 1.08992 * 113.59281 * 229.26336 * 21 19 17 39 39 H 1.09007 * 113.57779 * 0.02562 * 21 19 17 40 40 H 1.07998 * 119.83619 * 359.97438 * 23 22 21 41 41 H 1.08000 * 120.02375 * 180.02562 * 24 23 22 42 42 H 1.07994 * 120.02157 * 180.02562 * 25 24 23 43 43 H 1.08000 * 119.99892 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1074 -2.5526 -0.3069 11 6 -0.2461 -4.0216 -0.7788 12 6 0.7639 -4.7442 0.1513 13 6 1.8975 -3.7079 0.3021 14 1 2.7028 -3.9352 -0.3964 15 6 2.4318 -3.7262 1.7357 16 7 3.0506 -5.0255 2.0097 17 6 3.5003 -5.3100 3.2480 18 8 3.3931 -4.4901 4.1353 19 6 4.1363 -6.6467 3.5300 20 1 4.8989 -6.9149 2.7989 21 6 4.5955 -6.8138 4.9854 22 6 3.5499 -7.9040 5.1157 23 6 2.9432 -8.8490 5.9241 24 6 1.9280 -9.6428 5.4278 25 6 1.5142 -9.4950 4.1170 26 6 2.1181 -8.5513 3.3014 27 6 3.1356 -7.7543 3.7954 28 1 -0.4851 0.8401 0.0004 29 1 -0.4069 -1.8691 -1.1013 30 1 -0.7091 -2.3825 0.5859 31 1 0.0429 -4.1249 -1.8246 32 1 -1.2590 -4.3904 -0.6172 33 1 1.1348 -5.6561 -0.3167 34 1 0.3120 -4.9650 1.1184 35 1 1.6096 -3.5612 2.4320 36 1 3.1743 -2.9374 1.8567 37 1 3.1365 -5.6811 1.3000 38 1 5.6186 -7.1771 5.0811 39 1 4.3959 -5.9419 5.6085 40 1 3.2657 -8.9670 6.9481 41 1 1.4576 -10.3786 6.0632 42 1 0.7201 -10.1149 3.7279 43 1 1.7941 -8.4360 2.2776 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028111447.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:43 Heat of formation + Delta-G solvation = 46.673965 kcal Electronic energy + Delta-G solvation = -23912.258972 eV Core-core repulsion = 20537.930946 eV Total energy + Delta-G solvation = -3374.328025 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.95292 -38.92152 -37.59528 -35.29368 -34.24113 -32.48544 -30.98381 -29.74972 -28.88387 -27.65555 -25.67509 -24.65573 -23.55687 -22.10323 -21.02043 -20.27511 -19.86941 -19.27229 -17.46260 -16.84468 -16.57214 -15.95658 -15.43472 -15.00203 -14.79500 -14.56726 -14.40829 -13.92637 -13.70599 -13.27499 -13.16063 -12.84192 -12.61117 -12.25432 -12.05163 -12.01635 -11.88710 -11.70597 -11.32835 -11.11125 -10.95245 -10.77847 -10.66036 -10.25494 -10.13916 -10.00240 -9.86119 -9.77889 -9.68046 -8.98212 -8.70081 -8.66380 -8.57751 -6.84897 -5.77477 -3.14331 1.10556 1.22015 2.74555 3.35651 3.41541 3.45270 3.46273 3.62961 4.02223 4.21652 4.31419 4.48141 4.86266 4.90991 4.93851 5.09224 5.32562 5.39449 5.39937 5.44077 5.49929 5.54200 5.61536 5.69769 5.79937 5.84517 5.95826 6.05370 6.12622 6.20230 6.23448 6.31255 6.44718 6.53146 6.55293 6.61551 6.69720 6.79943 6.80799 7.05070 7.50218 7.60113 7.76848 7.78038 8.24662 8.45416 9.16497 9.77157 10.44587 11.34502 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.021615 B = 0.003420 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.105408 B = 8185.269755 C = 9054.394160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.000 4.000 3 Si 0.911 3.089 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.236 4.236 8 H 0.075 0.925 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.148 4.148 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.109 3.891 16 N -0.718 5.718 17 C 0.524 3.476 18 O -0.536 6.536 19 C -0.069 4.069 20 H 0.119 0.881 21 C -0.057 4.057 22 C -0.119 4.119 23 C -0.099 4.099 24 C -0.114 4.114 25 C -0.122 4.122 26 C -0.086 4.086 27 C -0.122 4.122 28 H 0.255 0.745 29 H 0.072 0.928 30 H 0.026 0.974 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.396 0.604 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.118 0.882 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.301 -20.212 5.684 21.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.364 4.364 8 H 0.093 0.907 9 N -0.313 5.313 10 C 0.048 3.952 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.044 3.956 14 H 0.055 0.945 15 C -0.016 4.016 16 N -0.368 5.368 17 C 0.308 3.692 18 O -0.413 6.413 19 C -0.090 4.090 20 H 0.137 0.863 21 C -0.094 4.094 22 C -0.119 4.119 23 C -0.117 4.117 24 C -0.132 4.132 25 C -0.139 4.139 26 C -0.104 4.104 27 C -0.123 4.123 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.229 0.771 38 H 0.114 0.886 39 H 0.128 0.872 40 H 0.136 0.864 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.117 -19.324 6.290 20.956 hybrid contribution 0.378 0.512 -0.293 0.700 sum 5.494 -18.812 5.998 20.495 Atomic orbital electron populations 1.69926 1.05039 1.25462 1.55686 1.24921 0.95676 0.97884 1.01293 0.86224 0.78608 0.83056 0.78036 1.21051 1.21543 1.20924 1.18937 0.90366 0.82193 1.44928 0.90702 1.44472 1.06440 1.00997 1.79360 1.21448 0.84799 0.90148 0.98832 1.23001 0.97558 0.99631 0.98520 1.22597 0.97150 0.96931 0.99684 1.21125 0.94514 0.88113 0.91876 0.94519 1.22263 0.97546 0.82582 0.99249 1.46099 1.60878 1.19113 1.10716 1.19954 0.78674 0.87672 0.82879 1.90707 1.56484 1.49247 1.44882 1.21566 0.96384 0.91010 1.00022 0.86320 1.21816 0.97107 0.96511 0.94001 1.22300 0.98059 0.96433 0.95072 1.20288 0.96545 0.95404 0.99454 1.21009 0.97027 0.99383 0.95803 1.21094 1.00135 0.98635 0.94084 1.20478 0.94853 0.94911 1.00126 1.21807 0.97207 0.96747 0.96507 0.93525 0.90990 0.95609 0.92298 0.92357 0.92468 0.91870 0.91626 0.91467 0.77096 0.88617 0.87213 0.86351 0.85648 0.85550 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.69 10.58 55.49 0.59 -26.11 16 2 C 0.00 -0.01 5.47 -17.43 -0.10 -0.10 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.46 9.76 -15.06 -0.15 -6.61 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.59 -14.60 3.13 -162.57 -0.51 -15.11 16 10 C 0.17 4.12 5.41 -2.52 -0.01 4.10 16 11 C -0.15 -2.71 7.08 -24.58 -0.17 -2.89 16 12 C -0.13 -2.09 6.10 -24.90 -0.15 -2.24 16 13 C 0.15 2.99 3.22 -66.96 -0.22 2.77 16 14 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 15 C 0.11 2.11 5.07 -4.04 -0.02 2.09 16 16 N -0.72 -10.78 5.33 -60.30 -0.32 -11.10 16 17 C 0.52 8.22 7.37 -10.99 -0.08 8.14 16 18 O -0.54 -10.77 15.70 5.56 0.09 -10.68 16 19 C -0.07 -0.79 4.33 -92.22 -0.40 -1.19 16 20 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 21 C -0.06 -0.63 7.76 -27.18 -0.21 -0.84 16 22 C -0.12 -1.38 7.49 -103.78 -0.78 -2.16 16 23 C -0.10 -1.02 10.03 -39.58 -0.40 -1.42 16 24 C -0.11 -1.07 10.04 -39.63 -0.40 -1.47 16 25 C -0.12 -1.17 10.06 -39.45 -0.40 -1.56 16 26 C -0.09 -0.92 10.06 -39.41 -0.40 -1.32 16 27 C -0.12 -1.45 6.99 -103.79 -0.73 -2.17 16 28 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.07 1.91 6.94 -51.93 -0.36 1.55 16 30 H 0.03 0.67 8.06 -51.93 -0.42 0.26 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.06 7.81 -51.93 -0.41 0.65 16 35 H 0.07 1.45 8.08 -51.93 -0.42 1.03 16 36 H 0.07 1.47 7.92 -51.93 -0.41 1.06 16 37 H 0.40 4.69 8.34 -40.82 -0.34 4.35 16 38 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.11 1.40 7.04 -51.93 -0.37 1.03 16 40 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 43 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 353.25 15.07 5.32 5.32 Total: -1.00 -32.68 353.25 -10.95 -43.63 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -6.49 Total: 3.84 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -4.60 Total: -6.87 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.24 Total: -52.32 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.68 -10.95 -43.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028111447.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.302 kcal (2) G-P(sol) polarization free energy of solvation -32.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds