Wall clock time and date at job start Fri Apr 10 2020 20:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00047 * 2 1 4 4 H 1.48501 * 109.46854 * 271.86312 * 3 2 1 5 5 H 1.48499 * 109.47494 * 31.86057 * 3 2 1 6 6 H 1.48501 * 109.47305 * 151.86794 * 3 2 1 7 7 C 1.38810 * 120.00380 * 179.71757 * 2 1 3 8 8 H 1.08002 * 119.99647 * 343.45717 * 7 2 1 9 9 N 1.36942 * 120.00632 * 163.45358 * 7 2 1 10 10 C 1.47426 * 125.64363 * 324.63349 * 9 7 2 11 11 C 1.54908 * 104.82997 * 155.83281 * 10 9 7 12 12 C 1.55160 * 101.58266 * 37.00565 * 11 10 9 13 13 C 1.47019 * 125.64949 * 144.32308 * 9 7 2 14 14 H 1.08999 * 109.88221 * 300.51648 * 13 9 7 15 15 C 1.53004 * 109.88285 * 61.67955 * 13 9 7 16 16 N 1.46501 * 109.47219 * 298.31347 * 15 13 9 17 17 C 1.34771 * 119.99944 * 173.15680 * 16 15 13 18 18 O 1.21287 * 119.99849 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.00076 * 179.97438 * 17 16 15 20 20 H 1.08998 * 112.82602 * 311.10470 * 19 17 16 21 21 C 1.53519 * 113.58665 * 179.97438 * 19 17 16 22 22 C 1.51618 * 87.24535 * 245.40664 * 21 19 17 23 23 C 1.38369 * 147.52877 * 180.02562 * 22 21 19 24 24 C 1.38099 * 120.32418 * 179.97438 * 23 22 21 25 25 C 1.38242 * 119.95606 * 0.02562 * 24 23 22 26 26 C 1.38091 * 119.95591 * 0.02562 * 25 24 23 27 27 C 1.38374 * 120.32866 * 359.97153 * 26 25 24 28 28 H 0.96994 * 119.99870 * 0.28460 * 1 2 3 29 29 H 1.08997 * 110.36729 * 274.67117 * 10 9 7 30 30 H 1.09001 * 110.36618 * 36.88327 * 10 9 7 31 31 H 1.08993 * 111.00434 * 155.08228 * 11 10 9 32 32 H 1.09006 * 111.00653 * 278.93593 * 11 10 9 33 33 H 1.09007 * 110.71604 * 82.86077 * 12 11 10 34 34 H 1.08994 * 110.72367 * 205.95212 * 12 11 10 35 35 H 1.09001 * 109.46904 * 58.31113 * 15 13 9 36 36 H 1.08994 * 109.46805 * 178.30962 * 15 13 9 37 37 H 0.96998 * 119.99825 * 353.14518 * 16 15 13 38 38 H 1.08996 * 113.58875 * 359.97438 * 21 19 17 39 39 H 1.08997 * 113.59099 * 130.73932 * 21 19 17 40 40 H 1.07996 * 119.83577 * 0.02562 * 23 22 21 41 41 H 1.08001 * 120.01471 * 179.97438 * 24 23 22 42 42 H 1.07999 * 120.01975 * 180.02562 * 25 24 23 43 43 H 1.08000 * 119.83352 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4582 2.0691 -1.3994 5 1 1.4679 2.6411 0.7390 6 1 3.5669 1.4291 0.6601 7 6 2.0103 -1.2021 0.0059 8 1 1.5038 -2.1167 0.2768 9 7 3.3372 -1.2284 -0.3317 10 6 3.9811 -0.3807 -1.3516 11 6 5.4723 -0.3238 -0.9360 12 6 5.7032 -1.7637 -0.4061 13 6 4.3566 -2.1020 0.2674 14 1 4.4196 -1.9170 1.3398 15 6 4.0025 -3.5679 0.0093 16 7 2.7171 -3.8782 0.6400 17 6 2.1347 -5.0752 0.4296 18 8 2.6746 -5.8954 -0.2823 19 6 0.8128 -5.3946 1.0788 20 1 0.8003 -5.1700 2.1453 21 6 0.2842 -6.7954 0.7393 22 6 -0.8603 -6.1092 0.0195 23 6 -2.0247 -6.2433 -0.7158 24 6 -2.7114 -5.1245 -1.1445 25 6 -2.2351 -3.8631 -0.8393 26 6 -1.0729 -3.7236 -0.1066 27 6 -0.3809 -4.8412 0.3255 28 1 -0.4850 0.8400 -0.0042 29 1 3.8794 -0.8315 -2.3388 30 1 3.5452 0.6184 -1.3448 31 1 6.1098 -0.1169 -1.7955 32 1 5.6305 0.4125 -0.1479 33 1 5.9100 -2.4487 -1.2285 34 1 6.5142 -1.7814 0.3218 35 1 3.9314 -3.7409 -1.0645 36 1 4.7776 -4.2084 0.4300 37 1 2.2853 -3.2220 1.2092 38 1 0.9398 -7.3601 0.0766 39 1 -0.0287 -7.3671 1.6130 40 1 -2.3988 -7.2278 -0.9549 41 1 -3.6195 -5.2350 -1.7186 42 1 -2.7715 -2.9875 -1.1737 43 1 -0.7028 -2.7372 0.1310 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028111448.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:46 Heat of formation + Delta-G solvation = 57.001106 kcal Electronic energy + Delta-G solvation = -24901.872169 eV Core-core repulsion = 21527.991962 eV Total energy + Delta-G solvation = -3373.880207 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.52657 -38.74033 -37.74812 -34.84544 -33.95877 -32.71308 -30.39778 -30.01738 -29.52234 -27.28051 -25.58408 -24.50660 -23.36406 -21.64766 -20.97205 -20.32157 -19.80400 -19.04787 -17.38136 -16.50947 -16.34831 -16.11675 -15.41979 -14.88032 -14.67879 -14.48479 -14.07736 -13.75886 -13.46441 -13.03268 -12.71665 -12.60191 -12.52462 -12.36669 -12.08804 -11.93849 -11.73057 -11.59324 -11.37975 -11.32236 -10.94615 -10.72565 -10.62210 -10.50830 -10.23556 -10.06514 -9.87773 -9.59097 -9.43602 -8.64554 -8.38352 -8.36012 -8.17621 -6.89811 -6.08391 -3.52024 1.65287 1.83946 3.07829 3.25871 3.40163 3.44525 3.74031 4.19649 4.44433 4.48272 4.73431 4.76507 4.88338 5.09598 5.26714 5.32352 5.40179 5.41551 5.47067 5.50626 5.53540 5.79762 5.83755 5.91864 6.02740 6.07873 6.09404 6.17944 6.22813 6.23593 6.26795 6.31808 6.36745 6.53983 6.57019 6.79051 6.81503 6.83434 7.02202 7.06725 7.16303 7.42824 7.80202 8.12615 8.24326 8.70245 8.77579 9.56695 10.16071 11.05416 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.014752 B = 0.005758 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.558576 B = 4861.394733 C = 6366.373115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.036 3.964 3 Si 0.892 3.108 4 H -0.288 1.288 5 H -0.305 1.305 6 H -0.271 1.271 7 C -0.257 4.257 8 H 0.094 0.906 9 N -0.601 5.601 10 C 0.116 3.884 11 C -0.136 4.136 12 C -0.121 4.121 13 C 0.143 3.857 14 H 0.048 0.952 15 C 0.116 3.884 16 N -0.703 5.703 17 C 0.527 3.473 18 O -0.557 6.557 19 C -0.068 4.068 20 H 0.115 0.885 21 C -0.054 4.054 22 C -0.129 4.129 23 C -0.109 4.109 24 C -0.119 4.119 25 C -0.115 4.115 26 C -0.068 4.068 27 C -0.121 4.121 28 H 0.265 0.735 29 H 0.031 0.969 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.414 0.586 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.120 0.880 42 H 0.126 0.874 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.999 -7.574 2.010 8.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.165 4.165 3 Si 0.724 3.276 4 H -0.217 1.217 5 H -0.233 1.233 6 H -0.196 1.196 7 C -0.385 4.385 8 H 0.111 0.889 9 N -0.327 5.327 10 C -0.008 4.008 11 C -0.174 4.174 12 C -0.160 4.160 13 C 0.036 3.964 14 H 0.066 0.934 15 C -0.010 4.010 16 N -0.356 5.356 17 C 0.313 3.687 18 O -0.436 6.436 19 C -0.089 4.089 20 H 0.133 0.867 21 C -0.091 4.091 22 C -0.129 4.129 23 C -0.127 4.127 24 C -0.137 4.137 25 C -0.133 4.133 26 C -0.085 4.085 27 C -0.121 4.121 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.253 0.747 38 H 0.122 0.878 39 H 0.108 0.892 40 H 0.130 0.870 41 H 0.138 0.862 42 H 0.144 0.856 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.128 -8.017 1.546 8.438 hybrid contribution 0.079 1.542 0.080 1.546 sum 2.207 -6.476 1.626 7.032 Atomic orbital electron populations 1.69715 1.05573 1.26872 1.51965 1.25388 0.95236 0.97804 0.98105 0.86701 0.79882 0.84083 0.76947 1.21652 1.23332 1.19594 1.18723 0.81924 0.94009 1.43849 0.88870 1.44680 1.04861 1.43813 1.39391 1.21905 0.90788 0.95222 0.92866 1.22777 0.97540 0.96720 1.00396 1.22486 0.96453 0.96966 1.00049 1.21277 0.88966 0.89459 0.96685 0.93405 1.21920 0.84057 0.96925 0.98075 1.46237 1.22962 1.16075 1.50289 1.19979 0.85472 0.82140 0.81129 1.90619 1.65231 1.48522 1.39239 1.21495 0.90709 0.96368 1.00359 0.86731 1.21740 0.92956 0.95005 0.99388 1.22176 0.95468 0.97052 0.98213 1.20128 0.94679 0.98395 0.99486 1.20982 0.99757 0.92562 1.00446 1.21033 0.96415 0.97167 0.98722 1.20911 0.93328 0.99603 0.94695 1.21614 0.95816 0.94441 1.00254 0.92554 0.95151 0.94073 0.91575 0.91617 0.91273 0.91430 0.91816 0.92951 0.74663 0.87767 0.89153 0.87029 0.86195 0.85589 0.83270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.80 13.97 55.49 0.78 -24.02 16 2 C 0.04 0.95 5.46 -17.43 -0.10 0.85 16 3 Si 0.89 21.47 24.81 -169.99 -4.22 17.26 16 4 H -0.29 -6.95 6.76 56.52 0.38 -6.57 16 5 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.27 -6.37 7.07 56.52 0.40 -5.97 16 7 C -0.26 -6.46 9.49 -15.06 -0.14 -6.61 16 8 H 0.09 2.37 4.95 -52.49 -0.26 2.12 16 9 N -0.60 -13.28 2.69 -162.58 -0.44 -13.71 16 10 C 0.12 2.41 6.23 -2.53 -0.02 2.40 16 11 C -0.14 -2.23 7.08 -24.58 -0.17 -2.40 16 12 C -0.12 -1.82 6.47 -24.90 -0.16 -1.98 16 13 C 0.14 2.60 3.34 -66.96 -0.22 2.38 16 14 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 15 C 0.12 2.10 5.19 -4.04 -0.02 2.07 16 16 N -0.70 -13.09 4.36 -60.29 -0.26 -13.35 16 17 C 0.53 9.93 7.36 -10.99 -0.08 9.85 16 18 O -0.56 -11.88 15.68 5.55 0.09 -11.79 16 19 C -0.07 -1.10 4.34 -92.23 -0.40 -1.50 16 20 H 0.11 1.56 8.14 -51.93 -0.42 1.13 16 21 C -0.05 -0.78 7.77 -27.18 -0.21 -0.99 16 22 C -0.13 -2.11 7.49 -103.87 -0.78 -2.89 16 23 C -0.11 -1.64 10.03 -39.58 -0.40 -2.03 16 24 C -0.12 -1.79 10.04 -39.63 -0.40 -2.19 16 25 C -0.12 -1.98 10.04 -39.63 -0.40 -2.38 16 26 C -0.07 -1.31 10.03 -39.59 -0.40 -1.71 16 27 C -0.12 -2.18 6.97 -103.87 -0.72 -2.91 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.93 3.04 -51.93 -0.16 0.77 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.07 0.98 7.86 -51.92 -0.41 0.57 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 1.28 8.11 -51.93 -0.42 0.86 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.41 7.85 6.05 -40.82 -0.25 7.60 16 38 H 0.10 1.61 7.04 -51.93 -0.37 1.24 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 42 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 43 H 0.15 3.34 7.67 -52.49 -0.40 2.93 16 LS Contribution 342.11 15.07 5.16 5.16 Total: -1.00 -29.74 342.11 -9.59 -39.33 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -6.07 Total: 11.18 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -4.62 Total: -10.03 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: 0.07 Total: -51.09 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.79 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.22 Total: 17.26 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.74 -9.59 -39.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028111448.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.330 kcal (2) G-P(sol) polarization free energy of solvation -29.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds