Wall clock time and date at job start Fri Apr 10 2020 20:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00047 * 2 1 4 4 H 1.48501 * 109.46854 * 271.86312 * 3 2 1 5 5 H 1.48499 * 109.47494 * 31.86057 * 3 2 1 6 6 H 1.48501 * 109.47305 * 151.86794 * 3 2 1 7 7 C 1.38810 * 120.00380 * 179.71757 * 2 1 3 8 8 H 1.08002 * 119.99647 * 343.45717 * 7 2 1 9 9 N 1.36942 * 120.00632 * 163.45358 * 7 2 1 10 10 C 1.47426 * 125.64363 * 324.63349 * 9 7 2 11 11 C 1.54908 * 104.82997 * 155.83281 * 10 9 7 12 12 C 1.55160 * 101.58266 * 37.00565 * 11 10 9 13 13 C 1.47019 * 125.64949 * 144.32308 * 9 7 2 14 14 H 1.08999 * 109.88221 * 300.51648 * 13 9 7 15 15 C 1.53004 * 109.88285 * 61.67955 * 13 9 7 16 16 N 1.46501 * 109.47219 * 298.31347 * 15 13 9 17 17 C 1.34771 * 119.99944 * 173.15680 * 16 15 13 18 18 O 1.21287 * 119.99849 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.00076 * 179.97438 * 17 16 15 20 20 H 1.08998 * 112.82602 * 311.10470 * 19 17 16 21 21 C 1.53519 * 113.58665 * 179.97438 * 19 17 16 22 22 C 1.51618 * 87.24535 * 245.40664 * 21 19 17 23 23 C 1.38369 * 147.52877 * 180.02562 * 22 21 19 24 24 C 1.38099 * 120.32418 * 179.97438 * 23 22 21 25 25 C 1.38242 * 119.95606 * 0.02562 * 24 23 22 26 26 C 1.38091 * 119.95591 * 0.02562 * 25 24 23 27 27 C 1.38374 * 120.32866 * 359.97153 * 26 25 24 28 28 H 0.96994 * 119.99870 * 0.28460 * 1 2 3 29 29 H 1.08997 * 110.36729 * 274.67117 * 10 9 7 30 30 H 1.09001 * 110.36618 * 36.88327 * 10 9 7 31 31 H 1.08993 * 111.00434 * 155.08228 * 11 10 9 32 32 H 1.09006 * 111.00653 * 278.93593 * 11 10 9 33 33 H 1.09007 * 110.71604 * 82.86077 * 12 11 10 34 34 H 1.08994 * 110.72367 * 205.95212 * 12 11 10 35 35 H 1.09001 * 109.46904 * 58.31113 * 15 13 9 36 36 H 1.08994 * 109.46805 * 178.30962 * 15 13 9 37 37 H 0.96998 * 119.99825 * 353.14518 * 16 15 13 38 38 H 1.08996 * 113.58875 * 359.97438 * 21 19 17 39 39 H 1.08997 * 113.59099 * 130.73932 * 21 19 17 40 40 H 1.07996 * 119.83577 * 0.02562 * 23 22 21 41 41 H 1.08001 * 120.01471 * 179.97438 * 24 23 22 42 42 H 1.07999 * 120.01975 * 180.02562 * 25 24 23 43 43 H 1.08000 * 119.83352 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4582 2.0691 -1.3994 5 1 1.4679 2.6411 0.7390 6 1 3.5669 1.4291 0.6601 7 6 2.0103 -1.2021 0.0059 8 1 1.5038 -2.1167 0.2768 9 7 3.3372 -1.2284 -0.3317 10 6 3.9811 -0.3807 -1.3516 11 6 5.4723 -0.3238 -0.9360 12 6 5.7032 -1.7637 -0.4061 13 6 4.3566 -2.1020 0.2674 14 1 4.4196 -1.9170 1.3398 15 6 4.0025 -3.5679 0.0093 16 7 2.7171 -3.8782 0.6400 17 6 2.1347 -5.0752 0.4296 18 8 2.6746 -5.8954 -0.2823 19 6 0.8128 -5.3946 1.0788 20 1 0.8003 -5.1700 2.1453 21 6 0.2842 -6.7954 0.7393 22 6 -0.8603 -6.1092 0.0195 23 6 -2.0247 -6.2433 -0.7158 24 6 -2.7114 -5.1245 -1.1445 25 6 -2.2351 -3.8631 -0.8393 26 6 -1.0729 -3.7236 -0.1066 27 6 -0.3809 -4.8412 0.3255 28 1 -0.4850 0.8400 -0.0042 29 1 3.8794 -0.8315 -2.3388 30 1 3.5452 0.6184 -1.3448 31 1 6.1098 -0.1169 -1.7955 32 1 5.6305 0.4125 -0.1479 33 1 5.9100 -2.4487 -1.2285 34 1 6.5142 -1.7814 0.3218 35 1 3.9314 -3.7409 -1.0645 36 1 4.7776 -4.2084 0.4300 37 1 2.2853 -3.2220 1.2092 38 1 0.9398 -7.3601 0.0766 39 1 -0.0287 -7.3671 1.6130 40 1 -2.3988 -7.2278 -0.9549 41 1 -3.6195 -5.2350 -1.7186 42 1 -2.7715 -2.9875 -1.1737 43 1 -0.7028 -2.7372 0.1310 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028111448.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:45 Heat of formation + Delta-G solvation = 39.886971 kcal Electronic energy + Delta-G solvation = -24902.614294 eV Core-core repulsion = 21527.991962 eV Total energy + Delta-G solvation = -3374.622332 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.86845 -40.20433 -39.25987 -36.13503 -35.48156 -34.60268 -31.75091 -31.71066 -30.98751 -28.58549 -26.98063 -26.14152 -24.89368 -23.02390 -22.39027 -21.68306 -21.33331 -20.47816 -19.03528 -18.00356 -17.96169 -17.52119 -16.93318 -16.40063 -16.14741 -15.88031 -15.55252 -15.14694 -15.05718 -14.76780 -14.28758 -13.97346 -13.87382 -13.81876 -13.57345 -13.44537 -13.05154 -12.97612 -12.95273 -12.80630 -12.59728 -12.27941 -12.04417 -11.88244 -11.70454 -11.53912 -11.40816 -11.36700 -10.90403 -10.63286 -9.91742 -9.70794 -9.47304 -8.72535 -8.10917 -5.51456 0.35819 0.51756 1.30692 1.40560 1.50363 1.59624 2.32087 2.46820 2.87767 3.10130 3.22989 3.36994 3.49446 3.51699 3.88320 3.92863 4.00017 4.13593 4.22129 4.27474 4.31395 4.33519 4.48030 4.66590 4.68841 4.73180 4.81691 4.85490 4.86086 4.97990 4.99050 5.00081 5.07280 5.13092 5.23785 5.30513 5.47164 5.51449 5.57643 5.69539 5.81710 5.92235 6.12235 6.26718 6.60794 6.85219 7.24993 7.59716 8.25703 9.04484 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.014752 B = 0.005758 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.558576 B = 4861.394733 C = 6366.373115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.017 4.017 3 Si 0.942 3.058 4 H -0.292 1.292 5 H -0.317 1.317 6 H -0.258 1.258 7 C -0.242 4.242 8 H 0.082 0.918 9 N -0.618 5.618 10 C 0.104 3.896 11 C -0.126 4.126 12 C -0.110 4.110 13 C 0.139 3.861 14 H 0.052 0.948 15 C 0.120 3.880 16 N -0.706 5.706 17 C 0.524 3.476 18 O -0.584 6.584 19 C -0.070 4.070 20 H 0.139 0.861 21 C -0.038 4.038 22 C -0.133 4.133 23 C -0.107 4.107 24 C -0.111 4.111 25 C -0.131 4.131 26 C -0.097 4.097 27 C -0.149 4.149 28 H 0.259 0.741 29 H 0.024 0.976 30 H 0.022 0.978 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.039 0.961 36 H 0.077 0.923 37 H 0.411 0.589 38 H 0.097 0.903 39 H 0.129 0.871 40 H 0.148 0.852 41 H 0.157 0.843 42 H 0.126 0.874 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.480 -9.392 2.253 10.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.214 4.214 3 Si 0.775 3.225 4 H -0.221 1.221 5 H -0.247 1.247 6 H -0.183 1.183 7 C -0.371 4.371 8 H 0.099 0.901 9 N -0.344 5.344 10 C -0.021 4.021 11 C -0.164 4.164 12 C -0.148 4.148 13 C 0.033 3.967 14 H 0.070 0.930 15 C -0.005 4.005 16 N -0.357 5.357 17 C 0.310 3.690 18 O -0.466 6.466 19 C -0.091 4.091 20 H 0.156 0.844 21 C -0.075 4.075 22 C -0.133 4.133 23 C -0.125 4.125 24 C -0.128 4.128 25 C -0.149 4.149 26 C -0.116 4.116 27 C -0.149 4.149 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.039 0.961 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.250 0.750 38 H 0.115 0.885 39 H 0.147 0.853 40 H 0.166 0.834 41 H 0.174 0.826 42 H 0.144 0.856 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.658 -9.838 1.793 10.648 hybrid contribution -0.398 2.035 -0.053 2.074 sum 3.259 -7.803 1.740 8.633 Atomic orbital electron populations 1.69857 1.06716 1.26771 1.54650 1.25917 0.95748 1.00328 0.99445 0.85876 0.79127 0.81079 0.76444 1.22054 1.24654 1.18253 1.18839 0.83530 0.93437 1.41270 0.90092 1.44862 1.04638 1.44596 1.40307 1.22061 0.93851 0.93693 0.92457 1.22745 0.94391 0.97602 1.01626 1.22515 0.95225 0.96091 1.01001 1.21498 0.89715 0.88402 0.97067 0.92973 1.21904 0.84486 0.97437 0.96704 1.46331 1.23274 1.16030 1.50061 1.20445 0.86137 0.81689 0.80692 1.90594 1.66228 1.49248 1.40492 1.21657 0.88546 0.97592 1.01275 0.84360 1.21750 0.91482 0.93925 1.00347 1.22580 0.96223 0.96312 0.98150 1.20588 0.93859 1.00016 0.98009 1.21359 1.00589 0.91285 0.99603 1.21164 0.96049 0.98723 0.98989 1.20742 0.95242 0.98305 0.97269 1.21856 0.96969 0.94849 1.01252 0.93219 0.95793 0.96051 0.88460 0.91603 0.90080 0.87978 0.94220 0.90525 0.75049 0.88520 0.85271 0.83412 0.82588 0.85610 0.87546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.55 13.97 21.65 0.30 -54.24 16 2 C -0.02 -0.95 5.46 84.86 0.46 -0.49 16 3 Si 0.94 45.53 24.81 68.60 1.70 47.23 16 4 H -0.29 -14.08 6.76 99.48 0.67 -13.41 16 5 H -0.32 -15.75 7.11 99.48 0.71 -15.04 16 6 H -0.26 -11.73 7.07 99.48 0.70 -11.03 16 7 C -0.24 -12.53 9.49 84.03 0.80 -11.74 16 8 H 0.08 4.36 4.95 -2.91 -0.01 4.34 16 9 N -0.62 -27.22 2.69 -668.28 -1.80 -29.01 16 10 C 0.10 4.20 6.23 86.85 0.54 4.74 16 11 C -0.13 -3.71 7.08 31.99 0.23 -3.49 16 12 C -0.11 -2.92 6.47 31.78 0.21 -2.71 16 13 C 0.14 4.84 3.34 45.34 0.15 4.99 16 14 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 15 C 0.12 4.23 5.19 86.38 0.45 4.68 16 16 N -0.71 -26.48 4.36 -463.06 -2.02 -28.51 16 17 C 0.52 19.74 7.36 87.66 0.65 20.39 16 18 O -0.58 -24.80 15.68 -3.05 -0.05 -24.84 16 19 C -0.07 -2.23 4.34 -11.83 -0.05 -2.28 16 20 H 0.14 3.63 8.14 -2.39 -0.02 3.61 16 21 C -0.04 -1.02 7.77 30.30 0.24 -0.79 16 22 C -0.13 -4.13 7.49 -19.38 -0.15 -4.28 16 23 C -0.11 -2.94 10.03 22.27 0.22 -2.72 16 24 C -0.11 -3.13 10.04 22.24 0.22 -2.91 16 25 C -0.13 -4.65 10.04 22.24 0.22 -4.43 16 26 C -0.10 -4.02 10.03 22.27 0.22 -3.80 16 27 C -0.15 -5.47 6.97 -19.38 -0.14 -5.61 16 28 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 29 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.02 0.96 3.04 -2.39 -0.01 0.95 16 31 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.08 1.99 7.86 -2.38 -0.02 1.97 16 34 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.04 1.59 8.11 -2.39 -0.02 1.57 16 36 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.41 16.01 6.05 -92.71 -0.56 15.45 16 38 H 0.10 2.80 7.04 -2.39 -0.02 2.78 16 39 H 0.13 2.44 8.14 -2.39 -0.02 2.43 16 40 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 41 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 42 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 43 H 0.11 5.26 7.67 -2.91 -0.02 5.24 16 Total: -1.00 -68.06 342.11 2.84 -65.22 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: 0.43 Total: 34.59 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: 4.28 Total: -10.43 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -3.52 Total: -111.76 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.05 Total: -24.84 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.70 Total: 47.23 kcal Total: -68.06 2.84 -65.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028111448.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.106 kcal (2) G-P(sol) polarization free energy of solvation -68.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds