Wall clock time and date at job start Fri Apr 10 2020 20:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99810 * 2 1 4 4 H 1.48504 * 109.47244 * 270.00396 * 3 2 1 5 5 H 1.48498 * 109.46965 * 30.00494 * 3 2 1 6 6 H 1.48497 * 109.47156 * 150.00305 * 3 2 1 7 7 C 1.38811 * 120.00329 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99896 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99973 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64597 * 345.77161 * 9 7 2 11 11 C 1.54917 * 104.83031 * 204.16826 * 10 9 7 12 12 C 1.55160 * 101.57787 * 322.99053 * 11 10 9 13 13 C 1.47021 * 125.64520 * 165.81227 * 9 7 2 14 14 H 1.09001 * 110.00981 * 59.41891 * 13 9 7 15 15 C 1.53000 * 109.88744 * 298.31947 * 13 9 7 16 16 N 1.46493 * 109.47145 * 176.74195 * 15 13 9 17 17 C 1.34774 * 120.00026 * 174.97230 * 16 15 13 18 18 O 1.21280 * 120.00255 * 359.97438 * 17 16 15 19 19 C 1.50699 * 120.00053 * 180.02562 * 17 16 15 20 20 H 1.08997 * 112.83767 * 51.61385 * 19 17 16 21 21 C 1.52266 * 113.66092 * 182.80485 * 19 17 16 22 22 C 1.50566 * 87.23595 * 114.59712 * 21 19 17 23 23 C 1.38805 * 147.31341 * 180.02562 * 22 21 19 24 24 C 1.38063 * 120.09487 * 179.97438 * 23 22 21 25 25 C 1.38236 * 119.98302 * 359.92317 * 24 23 22 26 26 C 1.38066 * 119.97621 * 0.12691 * 25 24 23 27 27 C 1.37730 * 92.76090 * 359.97438 * 22 21 19 28 28 H 0.96998 * 120.00404 * 359.97438 * 1 2 3 29 29 H 1.08997 * 110.36731 * 85.33089 * 10 9 7 30 30 H 1.08996 * 110.45781 * 323.05145 * 10 9 7 31 31 H 1.08991 * 111.00326 * 204.91694 * 11 10 9 32 32 H 1.08994 * 111.03746 * 81.07616 * 11 10 9 33 33 H 1.09004 * 110.72082 * 277.13492 * 12 11 10 34 34 H 1.09000 * 110.72056 * 153.86456 * 12 11 10 35 35 H 1.08997 * 109.46756 * 56.73905 * 15 13 9 36 36 H 1.09001 * 109.46665 * 296.74533 * 15 13 9 37 37 H 0.97006 * 120.00245 * 354.97553 * 16 15 13 38 38 H 1.08994 * 113.58980 * 0.02562 * 21 19 17 39 39 H 1.09001 * 113.58577 * 229.17820 * 21 19 17 40 40 H 1.07997 * 119.94663 * 359.70768 * 23 22 21 41 41 H 1.08003 * 120.01245 * 179.97438 * 24 23 22 42 42 H 1.07993 * 120.01125 * 180.02562 * 25 24 23 43 43 H 1.08005 * 119.95109 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1095 -2.5516 0.2944 11 6 -0.2515 -4.0185 0.7720 12 6 0.7659 -4.7450 -0.1470 13 6 1.9003 -3.7091 -0.2939 14 1 2.7003 -3.9329 0.4119 15 6 2.4457 -3.7337 -1.7232 16 7 3.0849 -5.0266 -1.9797 17 6 3.5500 -5.3158 -3.2112 18 8 3.4389 -4.5059 -4.1071 19 6 4.2071 -6.6461 -3.4753 20 1 3.6009 -7.4901 -3.1463 21 6 4.7385 -6.7941 -4.8945 22 6 6.1183 -6.8482 -4.2942 23 6 7.4840 -6.9642 -4.5136 24 6 8.3606 -6.9455 -3.4471 25 6 7.8782 -6.8096 -2.1588 26 6 6.5199 -6.6952 -1.9392 27 6 5.6376 -6.7137 -3.0106 28 1 -0.4851 0.8400 0.0004 29 1 -0.7028 -2.3863 -0.6048 30 1 -0.4171 -1.8646 1.0827 31 1 -1.2630 -4.3879 0.6038 32 1 0.0292 -4.1175 1.8205 33 1 0.3194 -4.9680 -1.1161 34 1 1.1334 -5.6547 0.3279 35 1 3.1777 -2.9356 -1.8465 36 1 1.6265 -3.5873 -2.4271 37 1 3.1734 -5.6746 -1.2633 38 1 4.5684 -5.9162 -5.5177 39 1 4.4368 -7.7229 -5.3785 40 1 7.8611 -7.0734 -5.5197 41 1 9.4229 -7.0362 -3.6193 42 1 8.5635 -6.7945 -1.3242 43 1 6.1435 -6.5895 -0.9324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028111449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:48 Heat of formation + Delta-G solvation = 48.476784 kcal Electronic energy + Delta-G solvation = -23862.438045 eV Core-core repulsion = 20488.188196 eV Total energy + Delta-G solvation = -3374.249849 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.16983 -38.94626 -37.60151 -35.43317 -34.24596 -32.48841 -30.97170 -29.74935 -28.87907 -27.67350 -25.68805 -24.66013 -23.56296 -22.14522 -21.00019 -20.27495 -19.85660 -19.27635 -17.49171 -16.90039 -16.54596 -15.97225 -15.39157 -15.15655 -14.77402 -14.50183 -14.40260 -13.94021 -13.67152 -13.33741 -13.17101 -12.85909 -12.59719 -12.22204 -12.07414 -12.01591 -11.89675 -11.74249 -11.33113 -11.10787 -10.94555 -10.80160 -10.68724 -10.25506 -10.12122 -9.99271 -9.86639 -9.78038 -9.67955 -8.96291 -8.70898 -8.68322 -8.58155 -6.85199 -5.77477 -3.14141 1.12119 1.21134 2.76048 3.35891 3.41127 3.46066 3.46703 3.63458 4.05451 4.24378 4.34465 4.48142 4.86401 4.90775 4.94822 5.09515 5.32512 5.39366 5.41555 5.43438 5.49863 5.54505 5.61550 5.70842 5.79815 5.84685 5.96646 6.05083 6.12355 6.19719 6.23175 6.31917 6.44691 6.53086 6.55502 6.61472 6.69817 6.79981 6.80793 7.04737 7.50763 7.59809 7.76809 7.78415 8.24570 8.45347 9.16676 9.77208 10.44226 11.34442 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.017050 B = 0.003518 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.863194 B = 7956.358160 C = 8644.383836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.910 3.090 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.235 4.235 8 H 0.075 0.925 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.109 3.891 16 N -0.718 5.718 17 C 0.524 3.476 18 O -0.537 6.537 19 C -0.069 4.069 20 H 0.120 0.880 21 C -0.060 4.060 22 C -0.118 4.118 23 C -0.098 4.098 24 C -0.114 4.114 25 C -0.121 4.121 26 C -0.085 4.085 27 C -0.123 4.123 28 H 0.254 0.746 29 H 0.026 0.974 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.396 0.604 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.119 0.881 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.195 -18.231 -4.091 21.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.740 3.260 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.363 4.363 8 H 0.093 0.907 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.044 3.956 14 H 0.054 0.946 15 C -0.016 4.016 16 N -0.368 5.368 17 C 0.308 3.692 18 O -0.414 6.414 19 C -0.090 4.090 20 H 0.137 0.863 21 C -0.097 4.097 22 C -0.118 4.118 23 C -0.116 4.116 24 C -0.132 4.132 25 C -0.139 4.139 26 C -0.103 4.103 27 C -0.123 4.123 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.229 0.771 38 H 0.128 0.872 39 H 0.114 0.886 40 H 0.137 0.863 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.035 -17.346 -4.691 20.581 hybrid contribution 0.581 0.609 0.349 0.911 sum 10.616 -16.737 -4.341 20.290 Atomic orbital electron populations 1.69932 1.05020 1.25324 1.55873 1.24901 0.95670 0.97848 1.01360 0.86154 0.78719 0.83367 0.77739 1.21376 1.21612 1.20575 1.18985 0.90394 0.82197 1.44708 0.90675 1.44482 1.06151 1.00887 1.79786 1.21459 0.84723 0.90227 0.98865 1.23007 0.97521 0.99616 0.98588 1.22608 0.97095 0.96949 0.99743 1.21122 0.94465 0.88082 0.91958 0.94562 1.22259 0.97173 0.82830 0.99378 1.46088 1.59887 1.19901 1.10902 1.19961 0.78352 0.87832 0.83015 1.90706 1.57001 1.49449 1.44209 1.21186 0.93115 0.97443 0.97268 0.86254 1.21441 0.88491 1.04228 0.95528 1.21862 0.94359 0.98704 0.96863 1.20412 0.91135 1.00886 0.99210 1.21008 0.99416 1.00274 0.92538 1.20981 0.94757 1.00951 0.97229 1.20479 0.92380 0.99305 0.98166 1.21381 0.94622 1.01429 0.94894 0.93585 0.95643 0.90870 0.92339 0.92309 0.91814 0.92413 0.91565 0.91536 0.77096 0.87179 0.88608 0.86282 0.85661 0.85542 0.86093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.67 10.56 55.49 0.59 -26.09 16 2 C 0.00 -0.01 5.47 -17.43 -0.10 -0.11 16 3 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.23 -6.45 9.75 -15.06 -0.15 -6.59 16 8 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 9 N -0.59 -14.61 3.13 -162.57 -0.51 -15.12 16 10 C 0.17 4.09 5.42 -2.53 -0.01 4.07 16 11 C -0.15 -2.70 7.09 -24.58 -0.17 -2.87 16 12 C -0.13 -2.07 6.14 -24.89 -0.15 -2.22 16 13 C 0.15 2.99 3.21 -66.95 -0.21 2.77 16 14 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 15 C 0.11 2.11 5.08 -4.05 -0.02 2.09 16 16 N -0.72 -10.78 5.34 -60.30 -0.32 -11.10 16 17 C 0.52 8.22 7.35 -10.99 -0.08 8.14 16 18 O -0.54 -10.76 15.69 5.56 0.09 -10.67 16 19 C -0.07 -0.80 4.28 -93.65 -0.40 -1.20 16 20 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 21 C -0.06 -0.66 7.69 -28.62 -0.22 -0.88 16 22 C -0.12 -1.38 7.42 -104.95 -0.78 -2.16 16 23 C -0.10 -1.03 10.06 -39.44 -0.40 -1.42 16 24 C -0.11 -1.09 10.04 -39.65 -0.40 -1.49 16 25 C -0.12 -1.19 10.04 -39.65 -0.40 -1.59 16 26 C -0.09 -0.94 10.06 -39.43 -0.40 -1.33 16 27 C -0.12 -1.47 6.90 -104.96 -0.72 -2.19 16 28 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 30 H 0.07 1.94 6.90 -51.93 -0.36 1.58 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.04 7.80 -51.93 -0.40 0.63 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.48 7.90 -51.93 -0.41 1.07 16 36 H 0.07 1.44 8.06 -51.93 -0.42 1.02 16 37 H 0.40 4.70 8.36 -40.82 -0.34 4.36 16 38 H 0.11 1.41 7.02 -51.93 -0.36 1.04 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 41 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 42 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 352.92 15.07 5.32 5.32 Total: -1.00 -32.71 352.92 -10.97 -43.68 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.49 Total: 3.79 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -4.61 Total: -6.99 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.24 Total: -52.31 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.71 -10.97 -43.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028111449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.155 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds