Wall clock time and date at job start Fri Apr 10 2020 20:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99810 * 2 1 4 4 H 1.48504 * 109.47244 * 270.00396 * 3 2 1 5 5 H 1.48498 * 109.46965 * 30.00494 * 3 2 1 6 6 H 1.48497 * 109.47156 * 150.00305 * 3 2 1 7 7 C 1.38811 * 120.00329 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99896 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99973 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64597 * 345.77161 * 9 7 2 11 11 C 1.54917 * 104.83031 * 204.16826 * 10 9 7 12 12 C 1.55160 * 101.57787 * 322.99053 * 11 10 9 13 13 C 1.47021 * 125.64520 * 165.81227 * 9 7 2 14 14 H 1.09001 * 110.00981 * 59.41891 * 13 9 7 15 15 C 1.53000 * 109.88744 * 298.31947 * 13 9 7 16 16 N 1.46493 * 109.47145 * 176.74195 * 15 13 9 17 17 C 1.34774 * 120.00026 * 174.97230 * 16 15 13 18 18 O 1.21280 * 120.00255 * 359.97438 * 17 16 15 19 19 C 1.50699 * 120.00053 * 180.02562 * 17 16 15 20 20 H 1.08997 * 112.83767 * 51.61385 * 19 17 16 21 21 C 1.52266 * 113.66092 * 182.80485 * 19 17 16 22 22 C 1.50566 * 87.23595 * 114.59712 * 21 19 17 23 23 C 1.38805 * 147.31341 * 180.02562 * 22 21 19 24 24 C 1.38063 * 120.09487 * 179.97438 * 23 22 21 25 25 C 1.38236 * 119.98302 * 359.92317 * 24 23 22 26 26 C 1.38066 * 119.97621 * 0.12691 * 25 24 23 27 27 C 1.37730 * 92.76090 * 359.97438 * 22 21 19 28 28 H 0.96998 * 120.00404 * 359.97438 * 1 2 3 29 29 H 1.08997 * 110.36731 * 85.33089 * 10 9 7 30 30 H 1.08996 * 110.45781 * 323.05145 * 10 9 7 31 31 H 1.08991 * 111.00326 * 204.91694 * 11 10 9 32 32 H 1.08994 * 111.03746 * 81.07616 * 11 10 9 33 33 H 1.09004 * 110.72082 * 277.13492 * 12 11 10 34 34 H 1.09000 * 110.72056 * 153.86456 * 12 11 10 35 35 H 1.08997 * 109.46756 * 56.73905 * 15 13 9 36 36 H 1.09001 * 109.46665 * 296.74533 * 15 13 9 37 37 H 0.97006 * 120.00245 * 354.97553 * 16 15 13 38 38 H 1.08994 * 113.58980 * 0.02562 * 21 19 17 39 39 H 1.09001 * 113.58577 * 229.17820 * 21 19 17 40 40 H 1.07997 * 119.94663 * 359.70768 * 23 22 21 41 41 H 1.08003 * 120.01245 * 179.97438 * 24 23 22 42 42 H 1.07993 * 120.01125 * 180.02562 * 25 24 23 43 43 H 1.08005 * 119.95109 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1095 -2.5516 0.2944 11 6 -0.2515 -4.0185 0.7720 12 6 0.7659 -4.7450 -0.1470 13 6 1.9003 -3.7091 -0.2939 14 1 2.7003 -3.9329 0.4119 15 6 2.4457 -3.7337 -1.7232 16 7 3.0849 -5.0266 -1.9797 17 6 3.5500 -5.3158 -3.2112 18 8 3.4389 -4.5059 -4.1071 19 6 4.2071 -6.6461 -3.4753 20 1 3.6009 -7.4901 -3.1463 21 6 4.7385 -6.7941 -4.8945 22 6 6.1183 -6.8482 -4.2942 23 6 7.4840 -6.9642 -4.5136 24 6 8.3606 -6.9455 -3.4471 25 6 7.8782 -6.8096 -2.1588 26 6 6.5199 -6.6952 -1.9392 27 6 5.6376 -6.7137 -3.0106 28 1 -0.4851 0.8400 0.0004 29 1 -0.7028 -2.3863 -0.6048 30 1 -0.4171 -1.8646 1.0827 31 1 -1.2630 -4.3879 0.6038 32 1 0.0292 -4.1175 1.8205 33 1 0.3194 -4.9680 -1.1161 34 1 1.1334 -5.6547 0.3279 35 1 3.1777 -2.9356 -1.8465 36 1 1.6265 -3.5873 -2.4271 37 1 3.1734 -5.6746 -1.2633 38 1 4.5684 -5.9162 -5.5177 39 1 4.4368 -7.7229 -5.3785 40 1 7.8611 -7.0734 -5.5197 41 1 9.4229 -7.0362 -3.6193 42 1 8.5635 -6.7945 -1.3242 43 1 6.1435 -6.5895 -0.9324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028111449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:50:47 Heat of formation + Delta-G solvation = 28.662590 kcal Electronic energy + Delta-G solvation = -23863.297253 eV Core-core repulsion = 20488.188196 eV Total energy + Delta-G solvation = -3375.109057 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.11038 -40.21304 -39.18096 -36.31046 -35.75543 -34.41862 -31.79002 -31.44148 -30.52929 -28.58424 -26.97440 -26.39789 -24.97594 -23.06691 -22.12943 -21.82587 -21.26826 -20.58540 -18.93075 -18.24797 -17.69219 -17.36734 -16.72991 -16.39923 -16.21416 -15.82800 -15.73652 -15.38638 -15.04342 -14.66700 -14.06194 -13.91115 -13.89644 -13.66906 -13.54464 -13.40146 -13.03112 -12.99397 -12.87166 -12.84772 -12.70890 -12.02574 -11.93239 -11.88454 -11.73256 -11.51740 -11.48758 -11.40531 -11.05196 -10.70497 -10.10798 -9.75466 -9.54375 -8.87761 -7.90341 -5.27850 0.32441 0.43277 1.42136 1.44899 1.52314 1.53686 2.12938 2.48078 2.81942 3.18170 3.29358 3.44680 3.46101 3.68316 3.88347 3.97902 4.00127 4.21043 4.21592 4.26051 4.29638 4.44185 4.53946 4.65622 4.69392 4.71942 4.81410 4.95163 4.95879 4.99282 5.02819 5.13935 5.15764 5.21624 5.36066 5.45468 5.45721 5.56181 5.57119 5.65821 5.74463 5.77389 6.05759 6.21507 6.54997 7.07481 7.23020 7.74653 8.40168 9.20451 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.017050 B = 0.003518 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.863194 B = 7956.358160 C = 8644.383836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.058 4.058 3 Si 0.970 3.030 4 H -0.291 1.291 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.241 4.241 8 H 0.075 0.925 9 N -0.611 5.611 10 C 0.173 3.827 11 C -0.133 4.133 12 C -0.112 4.112 13 C 0.149 3.851 14 H 0.051 0.949 15 C 0.129 3.871 16 N -0.701 5.701 17 C 0.521 3.479 18 O -0.587 6.587 19 C -0.057 4.057 20 H 0.156 0.844 21 C -0.059 4.059 22 C -0.138 4.138 23 C -0.111 4.111 24 C -0.116 4.116 25 C -0.127 4.127 26 C -0.099 4.099 27 C -0.142 4.142 28 H 0.248 0.752 29 H -0.009 1.009 30 H 0.037 0.963 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.028 0.972 36 H 0.037 0.963 37 H 0.416 0.584 38 H 0.085 0.915 39 H 0.126 0.874 40 H 0.135 0.865 41 H 0.152 0.848 42 H 0.150 0.850 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.868 -21.156 -3.290 24.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.252 4.252 3 Si 0.798 3.202 4 H -0.219 1.219 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.370 4.370 8 H 0.093 0.907 9 N -0.336 5.336 10 C 0.048 3.952 11 C -0.172 4.172 12 C -0.150 4.150 13 C 0.041 3.959 14 H 0.069 0.931 15 C 0.003 3.997 16 N -0.353 5.353 17 C 0.308 3.692 18 O -0.468 6.468 19 C -0.078 4.078 20 H 0.174 0.826 21 C -0.096 4.096 22 C -0.138 4.138 23 C -0.129 4.129 24 C -0.134 4.134 25 C -0.145 4.145 26 C -0.117 4.117 27 C -0.143 4.143 28 H 0.057 0.943 29 H 0.009 0.991 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.125 0.875 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.253 0.747 38 H 0.103 0.897 39 H 0.144 0.856 40 H 0.153 0.847 41 H 0.169 0.831 42 H 0.168 0.832 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 11.737 -20.338 -3.862 23.797 hybrid contribution 0.156 1.481 0.075 1.491 sum 11.893 -18.857 -3.787 22.614 Atomic orbital electron populations 1.70132 1.06255 1.25412 1.57475 1.25659 0.96504 1.00930 1.02102 0.85210 0.78020 0.79644 0.77289 1.21875 1.21608 1.19214 1.19289 0.90689 0.83700 1.43367 0.90730 1.44753 1.06652 1.02042 1.80148 1.21279 0.83980 0.93638 0.96317 1.22872 0.99669 0.95205 0.99413 1.22602 0.95020 0.97345 0.99989 1.21337 0.96085 0.86749 0.91708 0.93108 1.21681 0.95320 0.84006 0.98701 1.45806 1.59193 1.18578 1.11731 1.20759 0.77349 0.88937 0.82129 1.90689 1.58824 1.51483 1.45760 1.21169 0.93259 0.95517 0.97841 0.82613 1.21454 0.88490 1.04580 0.95072 1.22086 0.95129 0.99517 0.97090 1.20745 0.90910 1.00705 1.00531 1.21399 1.00734 0.99003 0.92215 1.21356 0.94794 1.00093 0.98249 1.20776 0.92930 0.99334 0.98631 1.21483 0.94609 1.02713 0.95457 0.94270 0.99137 0.94487 0.89863 0.91064 0.91598 0.87525 0.95342 0.94457 0.74680 0.89682 0.85635 0.84690 0.83052 0.83241 0.84836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.44 10.56 21.65 0.23 -57.21 16 2 C -0.06 -3.36 5.47 84.86 0.46 -2.89 16 3 Si 0.97 46.88 29.55 68.60 2.03 48.90 16 4 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.24 -13.61 9.75 84.03 0.82 -12.79 16 8 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.61 -30.88 3.13 -668.25 -2.09 -32.97 16 10 C 0.17 8.42 5.42 86.86 0.47 8.89 16 11 C -0.13 -4.54 7.09 31.99 0.23 -4.31 16 12 C -0.11 -3.31 6.14 31.78 0.20 -3.12 16 13 C 0.15 5.67 3.21 45.34 0.15 5.81 16 14 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 15 C 0.13 5.08 5.08 86.38 0.44 5.52 16 16 N -0.70 -20.16 5.34 -463.08 -2.47 -22.63 16 17 C 0.52 16.04 7.35 87.66 0.64 16.69 16 18 O -0.59 -24.24 15.69 -3.03 -0.05 -24.28 16 19 C -0.06 -1.21 4.28 -12.76 -0.05 -1.26 16 20 H 0.16 2.10 8.14 -2.39 -0.02 2.09 16 21 C -0.06 -1.23 7.69 29.37 0.23 -1.00 16 22 C -0.14 -3.04 7.42 -20.08 -0.15 -3.19 16 23 C -0.11 -2.11 10.06 22.36 0.22 -1.89 16 24 C -0.12 -1.90 10.04 22.23 0.22 -1.68 16 25 C -0.13 -2.16 10.04 22.23 0.22 -1.94 16 26 C -0.10 -1.94 10.06 22.37 0.22 -1.72 16 27 C -0.14 -3.12 6.90 -20.08 -0.14 -3.26 16 28 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 29 H -0.01 -0.51 8.07 -2.39 -0.02 -0.53 16 30 H 0.04 2.03 6.90 -2.39 -0.02 2.02 16 31 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.07 1.96 7.80 -2.38 -0.02 1.94 16 34 H 0.11 2.21 8.14 -2.39 -0.02 2.20 16 35 H 0.03 1.32 7.90 -2.39 -0.02 1.30 16 36 H 0.04 1.67 8.06 -2.39 -0.02 1.65 16 37 H 0.42 8.57 8.36 -92.70 -0.78 7.80 16 38 H 0.08 2.22 7.02 -2.39 -0.02 2.20 16 39 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 41 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 42 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 43 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -76.25 352.92 2.06 -74.18 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.23 Total: 16.15 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 4.18 Total: -2.14 kcal Atomic # 7 Polarization: -108.48 SS G_CDS: -4.33 Total: -112.81 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.05 Total: -24.28 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.90 kcal Total: -76.25 2.06 -74.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028111449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.845 kcal (2) G-P(sol) polarization free energy of solvation -76.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds