Wall clock time and date at job start Fri Apr 10 2020 20:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00302 * 2 1 4 4 H 1.48499 * 109.46932 * 274.98979 * 3 2 1 5 5 H 1.48499 * 109.46771 * 34.98960 * 3 2 1 6 6 H 1.48499 * 109.47165 * 154.98980 * 3 2 1 7 7 C 1.37883 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00063 * 189.55365 * 7 2 1 9 9 C 1.50698 * 119.99751 * 9.55442 * 7 2 1 10 10 C 1.53123 * 109.51783 * 185.42892 * 9 7 2 11 11 C 1.53041 * 109.27480 * 182.37722 * 10 9 7 12 12 N 1.46849 * 109.52160 * 59.18087 * 11 10 9 13 13 C 1.46903 * 110.99722 * 174.15817 * 12 11 10 14 14 C 1.50709 * 109.46921 * 169.99824 * 13 12 11 15 15 C 1.34240 * 126.48757 * 260.02358 * 14 13 12 16 16 N 1.36804 * 109.93542 * 179.76929 * 15 14 13 17 17 H 0.96999 * 125.07652 * 180.23122 * 16 15 14 18 18 C 1.37897 * 109.84939 * 0.23414 * 16 15 14 19 19 C 1.39101 * 133.35681 * 180.02562 * 18 16 15 20 20 C 1.37688 * 119.99594 * 179.97438 * 19 18 16 21 21 C 1.39271 * 120.61856 * 359.97438 * 20 19 18 22 22 O 1.35987 * 119.86261 * 179.97438 * 21 20 19 23 23 C 1.38035 * 120.26679 * 359.97438 * 21 20 19 24 24 C 1.39671 * 119.60820 * 0.02562 * 23 21 20 25 25 C 1.46848 * 111.20045 * 298.25467 * 12 11 10 26 26 C 1.53037 * 109.52148 * 61.74242 * 25 12 11 27 27 H 0.97003 * 119.99712 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.52638 * 305.55384 * 9 7 2 29 29 H 1.08997 * 109.50665 * 62.43740 * 10 9 7 30 30 H 1.08999 * 109.53668 * 302.33650 * 10 9 7 31 31 H 1.08996 * 109.46264 * 299.16513 * 11 10 9 32 32 H 1.09004 * 109.45223 * 179.18615 * 11 10 9 33 33 H 1.09000 * 109.47280 * 49.99917 * 13 12 11 34 34 H 1.08996 * 109.47662 * 290.00030 * 13 12 11 35 35 H 1.08002 * 125.03236 * 0.04062 * 15 14 13 36 36 H 1.07996 * 120.00395 * 359.95664 * 19 18 16 37 37 H 1.07995 * 119.69010 * 179.97438 * 20 19 18 38 38 H 0.96700 * 114.00016 * 269.98106 * 22 21 20 39 39 H 1.08002 * 120.19533 * 180.02562 * 23 21 20 40 40 H 1.08997 * 109.46656 * 181.76088 * 25 12 11 41 41 H 1.09004 * 109.46158 * 301.72909 * 25 12 11 42 42 H 1.08998 * 109.50355 * 180.88270 * 26 25 12 43 43 H 1.08998 * 109.53531 * 60.78415 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1072 -1.3948 5 1 1.5033 2.6199 0.8029 6 1 3.5955 1.4119 0.5919 7 6 2.0045 -1.1941 0.0005 8 1 3.0733 -1.2006 0.1558 9 6 1.2666 -2.4902 -0.2155 10 6 2.2320 -3.6649 -0.0346 11 6 1.4915 -4.9749 -0.3133 12 7 0.9637 -4.9583 -1.6835 13 6 0.3666 -6.2542 -2.0333 14 6 -0.3763 -6.1290 -3.3386 15 6 -1.7015 -5.9785 -3.4916 16 7 -2.0109 -5.8948 -4.8216 17 1 -2.9051 -5.7805 -5.1797 18 6 -0.8618 -5.9973 -5.5770 19 6 -0.6135 -5.9749 -6.9455 20 6 0.6751 -6.1033 -7.4134 21 6 1.7394 -6.2557 -6.5281 22 8 3.0058 -6.3818 -7.0071 23 6 1.5138 -6.2794 -5.1665 24 6 0.2107 -6.1500 -4.6806 25 6 -0.0017 -3.8672 -1.8676 26 6 0.6941 -2.5241 -1.6353 27 1 -0.4850 0.8401 0.0004 28 1 0.4543 -2.5718 0.5068 29 1 2.6103 -3.6710 0.9876 30 1 3.0649 -3.5626 -0.7303 31 1 0.6676 -5.0835 0.3920 32 1 2.1800 -5.8123 -0.1995 33 1 -0.3262 -6.5586 -1.2488 34 1 1.1534 -7.0017 -2.1334 35 1 -2.4169 -5.9264 -2.6842 36 1 -1.4312 -5.8571 -7.6409 37 1 0.8622 -6.0857 -8.4769 38 1 3.2729 -7.2955 -7.1770 39 1 2.3400 -6.3972 -4.4810 40 1 -0.3980 -3.9002 -2.8824 41 1 -0.8186 -3.9810 -1.1550 42 1 -0.0263 -1.7152 -1.7566 43 1 1.5023 -2.4028 -2.3565 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232865909.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:36 Heat of formation + Delta-G solvation = 12.093382 kcal Electronic energy + Delta-G solvation = -24273.324849 eV Core-core repulsion = 20897.497297 eV Total energy + Delta-G solvation = -3375.827552 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.31738 -38.53752 -37.97695 -35.27646 -34.15222 -32.28773 -30.93869 -29.76864 -28.98835 -28.43848 -26.34979 -24.16175 -22.92854 -22.04511 -21.82531 -21.32981 -19.33103 -18.52259 -18.02504 -17.72279 -16.30036 -16.14969 -15.36815 -15.28919 -14.67753 -14.43484 -14.16081 -14.06888 -13.99226 -13.61214 -12.97581 -12.76683 -12.63438 -12.52859 -12.28179 -11.96685 -11.48567 -11.42510 -11.33987 -11.18500 -10.95605 -10.70423 -10.42020 -10.30038 -10.13962 -9.98709 -9.56860 -9.34206 -8.81106 -8.65586 -8.22369 -8.09130 -7.73132 -7.46300 -5.93997 -3.93942 1.09430 1.49671 2.65840 3.10099 3.36354 3.43269 3.46789 3.76123 4.26139 4.51773 4.66661 4.73079 4.85510 5.01116 5.22344 5.33439 5.38792 5.45586 5.66892 5.72660 5.77737 5.85760 5.97656 5.99366 6.07096 6.20172 6.28649 6.38116 6.42761 6.53338 6.60503 6.68211 6.72796 6.78951 6.91557 7.03745 7.15154 7.23936 7.47632 7.49906 7.70246 7.74304 7.80355 7.92001 8.11549 8.13632 8.55919 9.10003 9.68734 11.15297 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.016276 B = 0.003801 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.949806 B = 7365.035163 C = 7665.991851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.884 3.116 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.511 4.511 8 H 0.054 0.946 9 C 0.047 3.953 10 C -0.106 4.106 11 C 0.060 3.940 12 N -0.529 5.529 13 C 0.126 3.874 14 C -0.153 4.153 15 C 0.055 3.945 16 N -0.595 5.595 17 H 0.415 0.585 18 C 0.087 3.913 19 C -0.119 4.119 20 C -0.123 4.123 21 C 0.067 3.933 22 O -0.497 6.497 23 C -0.080 4.080 24 C -0.073 4.073 25 C 0.061 3.939 26 C -0.099 4.099 27 H 0.258 0.742 28 H 0.027 0.973 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.023 0.977 32 H 0.057 0.943 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.168 0.832 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.381 0.619 39 H 0.131 0.869 40 H 0.060 0.940 41 H 0.018 0.982 42 H 0.071 0.929 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.025 -17.036 -11.673 21.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.713 3.287 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.549 4.549 8 H 0.072 0.928 9 C 0.028 3.972 10 C -0.143 4.143 11 C -0.068 4.068 12 N -0.254 5.254 13 C -0.002 4.002 14 C -0.160 4.160 15 C -0.071 4.071 16 N -0.198 5.198 17 H 0.251 0.749 18 C -0.019 4.019 19 C -0.140 4.140 20 C -0.143 4.143 21 C 0.022 3.978 22 O -0.305 6.305 23 C -0.099 4.099 24 C -0.078 4.078 25 C -0.066 4.066 26 C -0.137 4.137 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.185 0.815 36 H 0.139 0.861 37 H 0.145 0.855 38 H 0.236 0.764 39 H 0.149 0.851 40 H 0.078 0.922 41 H 0.036 0.964 42 H 0.089 0.911 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.902 -16.191 -11.934 20.489 hybrid contribution -0.772 0.492 0.287 0.959 sum -4.674 -15.699 -11.647 20.099 Atomic orbital electron populations 1.69972 1.05928 1.26244 1.50857 1.24950 0.94726 0.98928 0.95190 0.86701 0.80112 0.83984 0.77951 1.20759 1.21459 1.19904 1.21206 0.94054 0.91102 1.48518 0.92759 1.18694 0.93933 0.91772 0.92803 1.21665 0.99241 0.93878 0.99553 1.22130 0.97713 0.99289 0.87623 1.62088 1.36373 1.02131 1.24804 1.20386 0.96054 0.92825 0.90940 1.20132 0.92081 1.10479 0.93333 1.21648 0.96647 1.03833 0.85021 1.41699 1.07942 1.64905 1.05300 0.74872 1.18282 0.86394 1.04558 0.92700 1.19783 0.96928 1.05999 0.91299 1.20974 0.91312 1.02357 0.99625 1.18074 0.83891 1.05079 0.90753 1.84916 1.27637 1.31773 1.86223 1.20800 0.95683 0.99024 0.94383 1.18808 0.92072 1.04622 0.92322 1.22224 0.92828 0.92527 0.99054 1.21576 0.99431 0.93087 0.99596 0.93247 0.95528 0.93167 0.92563 0.95851 0.92455 0.94860 0.90707 0.81470 0.86125 0.85461 0.76447 0.85068 0.92171 0.96407 0.91086 0.93707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 12.20 55.43 0.68 -25.43 16 2 C 0.06 1.79 5.23 -17.82 -0.09 1.70 16 3 Si 0.88 21.83 29.55 -169.99 -5.02 16.81 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.40 8.48 -34.44 -0.29 -14.69 16 8 H 0.05 1.52 7.77 -52.48 -0.41 1.12 16 9 C 0.05 1.19 2.03 -91.65 -0.19 1.00 16 10 C -0.11 -2.27 5.32 -26.65 -0.14 -2.41 16 11 C 0.06 1.09 5.42 -3.83 -0.02 1.07 16 12 N -0.53 -9.58 4.80 -236.10 -1.13 -10.71 16 13 C 0.13 1.85 5.81 -4.97 -0.03 1.82 16 14 C -0.15 -2.17 4.04 -102.70 -0.42 -2.58 16 15 C 0.06 0.66 10.88 -16.74 -0.18 0.48 16 16 N -0.60 -6.39 6.08 -10.63 -0.06 -6.46 16 17 H 0.41 3.06 8.96 -40.82 -0.37 2.69 16 18 C 0.09 1.12 7.27 -83.92 -0.61 0.51 16 19 C -0.12 -1.34 10.06 -39.46 -0.40 -1.74 16 20 C -0.12 -1.42 9.95 -39.40 -0.39 -1.81 16 21 C 0.07 0.88 6.69 -39.27 -0.26 0.61 16 22 O -0.50 -5.84 13.50 -19.70 -0.27 -6.10 16 23 C -0.08 -1.15 10.03 -39.12 -0.39 -1.54 16 24 C -0.07 -1.07 6.35 -105.14 -0.67 -1.74 16 25 C 0.06 1.23 4.94 -3.83 -0.02 1.21 16 26 C -0.10 -2.39 5.19 -26.65 -0.14 -2.53 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.03 0.74 8.09 -51.93 -0.42 0.32 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 33 H 0.03 0.45 8.08 -51.93 -0.42 0.03 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 38 H 0.38 2.45 9.06 45.56 0.41 2.87 16 39 H 0.13 1.88 8.06 -52.49 -0.42 1.45 16 40 H 0.06 1.18 6.03 -51.93 -0.31 0.87 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 1.90 7.00 -51.93 -0.36 1.54 16 43 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 347.65 15.07 5.24 5.24 Total: -1.00 -32.80 347.65 -10.47 -43.27 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.66 Total: 4.03 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -4.24 Total: -20.65 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: -0.52 Total: -42.60 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.27 Total: -6.10 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.80 -10.47 -43.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232865909.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.365 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds