Wall clock time and date at job start Fri Apr 10 2020 20:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00302 * 2 1 4 4 H 1.48499 * 109.46932 * 274.98979 * 3 2 1 5 5 H 1.48499 * 109.46771 * 34.98960 * 3 2 1 6 6 H 1.48499 * 109.47165 * 154.98980 * 3 2 1 7 7 C 1.37883 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00063 * 189.55365 * 7 2 1 9 9 C 1.50698 * 119.99751 * 9.55442 * 7 2 1 10 10 C 1.53123 * 109.51783 * 185.42892 * 9 7 2 11 11 C 1.53041 * 109.27480 * 182.37722 * 10 9 7 12 12 N 1.46849 * 109.52160 * 59.18087 * 11 10 9 13 13 C 1.46903 * 110.99722 * 174.15817 * 12 11 10 14 14 C 1.50709 * 109.46921 * 169.99824 * 13 12 11 15 15 C 1.34240 * 126.48757 * 260.02358 * 14 13 12 16 16 N 1.36804 * 109.93542 * 179.76929 * 15 14 13 17 17 H 0.96999 * 125.07652 * 180.23122 * 16 15 14 18 18 C 1.37897 * 109.84939 * 0.23414 * 16 15 14 19 19 C 1.39101 * 133.35681 * 180.02562 * 18 16 15 20 20 C 1.37688 * 119.99594 * 179.97438 * 19 18 16 21 21 C 1.39271 * 120.61856 * 359.97438 * 20 19 18 22 22 O 1.35987 * 119.86261 * 179.97438 * 21 20 19 23 23 C 1.38035 * 120.26679 * 359.97438 * 21 20 19 24 24 C 1.39671 * 119.60820 * 0.02562 * 23 21 20 25 25 C 1.46848 * 111.20045 * 298.25467 * 12 11 10 26 26 C 1.53037 * 109.52148 * 61.74242 * 25 12 11 27 27 H 0.97003 * 119.99712 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.52638 * 305.55384 * 9 7 2 29 29 H 1.08997 * 109.50665 * 62.43740 * 10 9 7 30 30 H 1.08999 * 109.53668 * 302.33650 * 10 9 7 31 31 H 1.08996 * 109.46264 * 299.16513 * 11 10 9 32 32 H 1.09004 * 109.45223 * 179.18615 * 11 10 9 33 33 H 1.09000 * 109.47280 * 49.99917 * 13 12 11 34 34 H 1.08996 * 109.47662 * 290.00030 * 13 12 11 35 35 H 1.08002 * 125.03236 * 0.04062 * 15 14 13 36 36 H 1.07996 * 120.00395 * 359.95664 * 19 18 16 37 37 H 1.07995 * 119.69010 * 179.97438 * 20 19 18 38 38 H 0.96700 * 114.00016 * 269.98106 * 22 21 20 39 39 H 1.08002 * 120.19533 * 180.02562 * 23 21 20 40 40 H 1.08997 * 109.46656 * 181.76088 * 25 12 11 41 41 H 1.09004 * 109.46158 * 301.72909 * 25 12 11 42 42 H 1.08998 * 109.50355 * 180.88270 * 26 25 12 43 43 H 1.08998 * 109.53531 * 60.78415 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1072 -1.3948 5 1 1.5033 2.6199 0.8029 6 1 3.5955 1.4119 0.5919 7 6 2.0045 -1.1941 0.0005 8 1 3.0733 -1.2006 0.1558 9 6 1.2666 -2.4902 -0.2155 10 6 2.2320 -3.6649 -0.0346 11 6 1.4915 -4.9749 -0.3133 12 7 0.9637 -4.9583 -1.6835 13 6 0.3666 -6.2542 -2.0333 14 6 -0.3763 -6.1290 -3.3386 15 6 -1.7015 -5.9785 -3.4916 16 7 -2.0109 -5.8948 -4.8216 17 1 -2.9051 -5.7805 -5.1797 18 6 -0.8618 -5.9973 -5.5770 19 6 -0.6135 -5.9749 -6.9455 20 6 0.6751 -6.1033 -7.4134 21 6 1.7394 -6.2557 -6.5281 22 8 3.0058 -6.3818 -7.0071 23 6 1.5138 -6.2794 -5.1665 24 6 0.2107 -6.1500 -4.6806 25 6 -0.0017 -3.8672 -1.8676 26 6 0.6941 -2.5241 -1.6353 27 1 -0.4850 0.8401 0.0004 28 1 0.4543 -2.5718 0.5068 29 1 2.6103 -3.6710 0.9876 30 1 3.0649 -3.5626 -0.7303 31 1 0.6676 -5.0835 0.3920 32 1 2.1800 -5.8123 -0.1995 33 1 -0.3262 -6.5586 -1.2488 34 1 1.1534 -7.0017 -2.1334 35 1 -2.4169 -5.9264 -2.6842 36 1 -1.4312 -5.8571 -7.6409 37 1 0.8622 -6.0857 -8.4769 38 1 3.2729 -7.2955 -7.1770 39 1 2.3400 -6.3972 -4.4810 40 1 -0.3980 -3.9002 -2.8824 41 1 -0.8186 -3.9810 -1.1550 42 1 -0.0263 -1.7152 -1.7566 43 1 1.5023 -2.4028 -2.3565 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232865909.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:35 Heat of formation + Delta-G solvation = -10.316779 kcal Electronic energy + Delta-G solvation = -24274.296626 eV Core-core repulsion = 20897.497297 eV Total energy + Delta-G solvation = -3376.799330 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.24611 -39.76267 -39.23789 -36.24146 -35.81679 -33.87188 -32.37265 -31.45877 -30.15392 -29.35747 -27.97933 -25.80164 -23.88338 -23.69437 -23.04994 -22.72715 -20.35413 -20.29430 -18.93047 -18.70099 -18.41439 -17.06641 -16.88534 -16.31781 -16.26704 -15.66722 -15.59555 -15.18826 -15.10768 -14.77666 -14.61948 -14.29847 -14.15446 -13.83536 -13.59383 -13.23163 -13.01918 -12.90648 -12.79657 -12.55559 -12.48290 -12.18316 -12.13107 -12.03244 -11.86372 -11.32973 -11.24705 -10.74890 -10.64504 -10.48956 -10.40077 -9.09504 -8.99739 -8.48991 -8.11985 -6.19277 0.16277 0.57067 1.38768 1.41013 1.50637 1.69000 2.26830 2.43782 2.82542 3.18036 3.29809 3.40375 3.84548 3.92996 4.08484 4.27857 4.29885 4.34121 4.37519 4.48969 4.52756 4.61962 4.76359 4.78752 4.84093 4.88023 4.92672 4.99959 5.03907 5.11250 5.17038 5.25642 5.34364 5.43632 5.54655 5.60246 5.63403 5.69068 5.79962 5.98205 6.01396 6.13072 6.36045 6.41284 6.44371 6.73970 6.92489 7.00052 7.46728 8.96554 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.016276 B = 0.003801 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.949806 B = 7365.035163 C = 7665.991851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.016 3.984 3 Si 0.947 3.053 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.534 4.534 8 H 0.049 0.951 9 C 0.045 3.955 10 C -0.100 4.100 11 C 0.067 3.933 12 N -0.539 5.539 13 C 0.131 3.869 14 C -0.189 4.189 15 C 0.070 3.930 16 N -0.582 5.582 17 H 0.432 0.568 18 C 0.072 3.928 19 C -0.112 4.112 20 C -0.130 4.130 21 C 0.066 3.934 22 O -0.510 6.510 23 C -0.110 4.110 24 C -0.096 4.096 25 C 0.081 3.919 26 C -0.089 4.089 27 H 0.260 0.740 28 H -0.004 1.004 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.026 0.974 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.193 0.807 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.404 0.596 39 H 0.119 0.881 40 H 0.066 0.934 41 H 0.016 0.984 42 H 0.038 0.962 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.639 -18.020 -12.792 22.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.183 4.183 3 Si 0.773 3.227 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.572 4.572 8 H 0.067 0.933 9 C 0.026 3.974 10 C -0.137 4.137 11 C -0.061 4.061 12 N -0.265 5.265 13 C 0.004 3.996 14 C -0.196 4.196 15 C -0.059 4.059 16 N -0.187 5.187 17 H 0.271 0.729 18 C -0.036 4.036 19 C -0.132 4.132 20 C -0.150 4.150 21 C 0.020 3.980 22 O -0.322 6.322 23 C -0.129 4.129 24 C -0.101 4.101 25 C -0.047 4.047 26 C -0.127 4.127 27 H 0.069 0.931 28 H 0.014 0.986 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.210 0.790 36 H 0.169 0.831 37 H 0.169 0.831 38 H 0.261 0.739 39 H 0.137 0.863 40 H 0.084 0.916 41 H 0.034 0.966 42 H 0.057 0.943 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -4.521 -17.206 -13.073 22.077 hybrid contribution -0.569 0.765 0.588 1.120 sum -5.090 -16.441 -12.486 21.263 Atomic orbital electron populations 1.70083 1.07217 1.27077 1.51406 1.25699 0.95561 1.02219 0.94822 0.85714 0.79091 0.79910 0.78011 1.20449 1.20737 1.19184 1.21589 0.94077 0.92799 1.48777 0.93280 1.18648 0.93642 0.92619 0.92468 1.21537 0.98312 0.94319 0.99580 1.22050 0.98054 0.98147 0.87850 1.62002 1.36426 1.03376 1.24651 1.20371 0.96699 0.90699 0.91796 1.20173 0.93091 1.13385 0.92969 1.22027 0.96428 1.01424 0.85987 1.41699 1.08403 1.63757 1.04799 0.72851 1.18511 0.86603 1.05142 0.93306 1.20161 0.97763 1.04112 0.91196 1.21256 0.91036 1.02078 1.00611 1.18258 0.84638 1.04426 0.90636 1.84839 1.27361 1.33978 1.86068 1.20840 0.95648 1.01380 0.95023 1.19064 0.92684 1.05202 0.93163 1.21872 0.92521 0.91040 0.99222 1.21355 0.98156 0.94855 0.98381 0.93136 0.98612 0.92801 0.93464 0.95620 0.89378 0.93335 0.89841 0.79028 0.83053 0.83147 0.73866 0.86331 0.91609 0.96590 0.94318 0.95547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.03 12.20 21.45 0.26 -54.76 16 2 C 0.02 0.90 5.23 84.66 0.44 1.34 16 3 Si 0.95 45.32 29.55 68.60 2.03 47.34 16 4 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.53 -30.91 8.48 25.60 0.22 -30.69 16 8 H 0.05 2.81 7.77 -2.91 -0.02 2.79 16 9 C 0.04 2.35 2.03 -11.46 -0.02 2.33 16 10 C -0.10 -4.32 5.32 30.65 0.16 -4.15 16 11 C 0.07 2.35 5.42 86.33 0.47 2.82 16 12 N -0.54 -19.14 4.80 -900.89 -4.32 -23.46 16 13 C 0.13 3.66 5.81 85.56 0.50 4.15 16 14 C -0.19 -5.10 4.04 -18.62 -0.08 -5.18 16 15 C 0.07 1.51 10.88 83.00 0.90 2.41 16 16 N -0.58 -11.09 6.08 -187.53 -1.14 -12.23 16 17 H 0.43 5.08 8.96 -92.71 -0.83 4.25 16 18 C 0.07 1.71 7.27 38.98 0.28 1.99 16 19 C -0.11 -2.25 10.06 22.35 0.22 -2.02 16 20 C -0.13 -2.75 9.95 22.39 0.22 -2.53 16 21 C 0.07 1.66 6.69 22.47 0.15 1.82 16 22 O -0.51 -11.59 13.50 -93.40 -1.26 -12.85 16 23 C -0.11 -3.16 10.03 22.57 0.23 -2.94 16 24 C -0.10 -2.74 6.35 -20.20 -0.13 -2.87 16 25 C 0.08 3.27 4.94 86.33 0.43 3.70 16 26 C -0.09 -4.46 5.19 30.65 0.16 -4.31 16 27 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 28 H 0.00 -0.25 8.09 -2.39 -0.02 -0.27 16 29 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.05 2.10 8.14 -2.39 -0.02 2.09 16 31 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.09 2.59 8.12 -2.38 -0.02 2.57 16 33 H 0.05 1.21 8.08 -2.39 -0.02 1.19 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.19 3.08 8.06 -2.91 -0.02 3.06 16 36 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 37 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 38 H 0.40 4.78 9.06 -74.06 -0.67 4.11 16 39 H 0.12 3.54 8.06 -2.91 -0.02 3.51 16 40 H 0.07 2.57 6.03 -2.39 -0.01 2.56 16 41 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.04 2.15 7.00 -2.39 -0.02 2.13 16 43 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -72.32 347.65 -0.75 -73.07 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -0.47 Total: 17.04 kcal Atomic # 6 Polarization: -38.30 SS G_CDS: 4.16 Total: -34.14 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -5.20 Total: -90.46 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -1.26 Total: -12.85 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -72.32 -0.75 -73.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232865909.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.758 kcal (2) G-P(sol) polarization free energy of solvation -72.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds