Wall clock time and date at job start Fri Apr 10 2020 20:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99928 * 2 1 4 4 H 1.48499 * 109.46897 * 269.99912 * 3 2 1 5 5 H 1.48497 * 109.47320 * 30.00163 * 3 2 1 6 6 H 1.48501 * 109.46980 * 150.00286 * 3 2 1 7 7 C 1.37882 * 119.99521 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99497 * 179.97438 * 7 2 1 9 9 C 1.50689 * 120.00301 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.50514 * 299.92009 * 9 7 2 11 11 C 1.53118 * 109.50697 * 59.99867 * 9 7 2 12 12 C 1.53121 * 109.16298 * 177.63428 * 11 9 7 13 13 C 1.53036 * 109.27700 * 302.34554 * 12 11 9 14 14 N 1.46844 * 109.52466 * 59.18272 * 13 12 11 15 15 C 1.46894 * 111.00084 * 174.16273 * 14 13 12 16 16 C 1.50697 * 109.47580 * 66.04032 * 15 14 13 17 17 C 1.34250 * 126.49072 * 260.00450 * 16 15 14 18 18 N 1.36804 * 109.93642 * 179.97438 * 17 16 15 19 19 H 0.96994 * 125.07177 * 180.02562 * 18 17 16 20 20 C 1.37894 * 109.85113 * 359.97438 * 18 17 16 21 21 C 1.39102 * 133.35970 * 179.97438 * 20 18 17 22 22 C 1.37676 * 119.99515 * 179.97438 * 21 20 18 23 23 C 1.39272 * 120.62444 * 359.72703 * 22 21 20 24 24 O 1.35991 * 119.86453 * 180.29978 * 23 22 21 25 25 C 1.38033 * 120.26492 * 0.55899 * 23 22 21 26 26 C 1.39674 * 119.60388 * 359.44298 * 25 23 22 27 27 C 1.46855 * 111.19350 * 298.25230 * 14 13 12 28 28 H 0.96999 * 120.00209 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.52463 * 57.73114 * 11 9 7 30 30 H 1.08998 * 109.57394 * 297.57128 * 11 9 7 31 31 H 1.09006 * 109.50307 * 182.40044 * 12 11 9 32 32 H 1.09006 * 109.50380 * 62.28630 * 12 11 9 33 33 H 1.08996 * 109.46249 * 299.16044 * 13 12 11 34 34 H 1.08998 * 109.45752 * 179.19405 * 13 12 11 35 35 H 1.09002 * 109.47031 * 306.04078 * 15 14 13 36 36 H 1.08997 * 109.47359 * 186.04077 * 15 14 13 37 37 H 1.07996 * 125.02800 * 0.03366 * 17 16 15 38 38 H 1.07997 * 119.99870 * 0.02684 * 21 20 18 39 39 H 1.08005 * 119.68471 * 179.97438 * 22 21 20 40 40 H 0.96695 * 114.00012 * 270.25108 * 24 23 22 41 41 H 1.08002 * 120.20058 * 179.72584 * 25 23 22 42 42 H 1.09005 * 109.45983 * 181.76069 * 27 14 13 43 43 H 1.08994 * 109.46339 * 301.73061 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6248 -2.5579 0.8909 11 6 0.3709 -2.5813 -1.2497 12 6 -0.3456 -3.9344 -1.2719 13 6 0.6938 -5.0571 -1.2389 14 7 1.5097 -4.9350 -0.0240 15 6 2.4265 -6.0747 0.1112 16 6 3.4383 -6.0408 -1.0051 17 6 3.4082 -6.7695 -2.1323 18 7 4.4928 -6.4699 -2.9104 19 1 4.6873 -6.8690 -3.7728 20 6 5.2676 -5.5152 -2.2862 21 6 6.4517 -4.8717 -2.6305 22 6 7.0003 -3.9383 -1.7800 23 6 6.3777 -3.6244 -0.5745 24 8 6.9299 -2.6955 0.2512 25 6 5.2052 -4.2561 -0.2118 26 6 4.6395 -5.2046 -1.0669 27 6 2.2442 -3.6635 -0.0034 28 1 -0.4850 0.8400 0.0004 29 1 0.9923 -2.4837 -2.1398 30 1 -0.3666 -1.7789 -1.2305 31 1 -0.9409 -4.0161 -2.1814 32 1 -0.9969 -4.0157 -0.4016 33 1 1.3359 -4.9835 -2.1165 34 1 0.1865 -6.0218 -1.2402 35 1 1.8601 -7.0046 0.0601 36 1 2.9413 -6.0151 1.0701 37 1 2.6408 -7.4853 -2.3874 38 1 6.9402 -5.1036 -3.5654 39 1 7.9201 -3.4419 -2.0522 40 1 7.5554 -3.0609 0.8917 41 1 4.7256 -4.0151 0.7253 42 1 2.8629 -3.6161 0.8928 43 1 2.8790 -3.5964 -0.8868 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232866122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:39 Heat of formation + Delta-G solvation = 15.087258 kcal Electronic energy + Delta-G solvation = -25162.048921 eV Core-core repulsion = 21786.351193 eV Total energy + Delta-G solvation = -3375.697728 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.27440 -38.36497 -37.93999 -35.14925 -33.99082 -32.31219 -30.89725 -29.82898 -28.81630 -28.31972 -25.49829 -24.80624 -22.89656 -22.07761 -21.69531 -21.05975 -19.48678 -18.25481 -17.90059 -17.69039 -16.24615 -16.06309 -15.21941 -14.93761 -14.55192 -14.43501 -14.14920 -14.04886 -13.72773 -13.50091 -13.05360 -12.75451 -12.61721 -12.32547 -12.11683 -12.00563 -11.49988 -11.45307 -11.15072 -11.04361 -10.83734 -10.54425 -10.48303 -10.20503 -9.94989 -9.72592 -9.49533 -9.26973 -8.89819 -8.56142 -8.18385 -7.99748 -7.69120 -7.34083 -5.85402 -3.89996 1.20459 1.62636 2.76041 3.17214 3.40166 3.46060 3.52405 3.89452 4.40684 4.53869 4.78133 4.84822 4.92798 5.10984 5.32439 5.40489 5.44837 5.54548 5.74154 5.82125 5.87484 5.93349 6.00217 6.16535 6.17629 6.19668 6.37793 6.46174 6.61672 6.63220 6.66365 6.76303 6.84802 6.86943 6.91939 7.11874 7.15825 7.33887 7.52251 7.57936 7.80110 7.89353 7.92692 7.96441 8.21529 8.30086 8.63139 9.14778 9.73869 11.20697 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.012200 B = 0.006388 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.552501 B = 4382.280923 C = 6021.180889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.886 3.114 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.507 4.507 8 H 0.054 0.946 9 C 0.054 3.946 10 H 0.031 0.969 11 C -0.109 4.109 12 C -0.118 4.118 13 C 0.064 3.936 14 N -0.528 5.528 15 C 0.123 3.877 16 C -0.190 4.190 17 C 0.053 3.947 18 N -0.598 5.598 19 H 0.412 0.588 20 C 0.086 3.914 21 C -0.121 4.121 22 C -0.122 4.122 23 C 0.074 3.926 24 O -0.493 6.493 25 C -0.082 4.082 26 C -0.077 4.077 27 C 0.068 3.932 28 H 0.258 0.742 29 H 0.026 0.974 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.025 0.975 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.166 0.834 38 H 0.119 0.881 39 H 0.127 0.873 40 H 0.380 0.620 41 H 0.134 0.866 42 H 0.054 0.946 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.049 -15.369 -4.505 18.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.546 4.546 8 H 0.072 0.928 9 C 0.035 3.965 10 H 0.049 0.951 11 C -0.147 4.147 12 C -0.156 4.156 13 C -0.064 4.064 14 N -0.251 5.251 15 C -0.006 4.006 16 C -0.199 4.199 17 C -0.074 4.074 18 N -0.201 5.201 19 H 0.248 0.752 20 C -0.020 4.020 21 C -0.142 4.142 22 C -0.142 4.142 23 C 0.028 3.972 24 O -0.301 6.301 25 C -0.101 4.101 26 C -0.082 4.082 27 C -0.058 4.058 28 H 0.067 0.933 29 H 0.045 0.955 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.183 0.817 38 H 0.137 0.863 39 H 0.145 0.855 40 H 0.234 0.766 41 H 0.151 0.849 42 H 0.072 0.928 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 9.200 -14.906 -4.505 18.086 hybrid contribution 1.404 0.516 -1.082 1.846 sum 10.603 -14.390 -5.587 18.728 Atomic orbital electron populations 1.69899 1.05795 1.26082 1.51302 1.24913 0.94770 0.98819 0.95334 0.86681 0.80087 0.83809 0.78001 1.20927 1.21354 1.19775 1.21181 0.92924 0.90636 1.49852 0.92774 1.18675 0.92663 0.90615 0.94547 0.95080 1.21629 0.99933 0.94635 0.98528 1.21681 0.97227 0.96729 0.99929 1.21983 0.95322 0.98180 0.90933 1.62439 1.22721 1.02672 1.37243 1.20644 0.90340 0.94927 0.94686 1.21263 0.98130 1.01075 0.99450 1.21602 0.91659 1.02036 0.92067 1.41694 1.21573 1.36798 1.20073 0.75154 1.18256 0.94912 0.94545 0.94311 1.19751 0.94716 0.99189 1.00566 1.20993 1.00562 0.97850 0.94752 1.18077 0.94379 0.92937 0.91793 1.84970 1.62379 1.33176 1.49578 1.20974 0.95035 0.93891 1.00200 1.18865 0.95830 0.99038 0.94475 1.22428 0.96351 0.88069 0.98986 0.93254 0.95469 0.89267 0.93861 0.92196 0.95701 0.92848 0.90920 0.90543 0.81664 0.86266 0.85463 0.76573 0.84858 0.92785 0.95051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.33 11.35 55.43 0.63 -25.70 16 2 C 0.06 1.79 5.30 -17.82 -0.09 1.70 16 3 Si 0.89 22.38 29.54 -169.99 -5.02 17.36 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.51 -14.58 8.57 -34.44 -0.30 -14.88 16 8 H 0.05 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.05 1.40 2.26 -91.69 -0.21 1.20 16 10 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 11 C -0.11 -2.71 5.02 -26.61 -0.13 -2.84 16 12 C -0.12 -2.39 6.09 -26.65 -0.16 -2.55 16 13 C 0.06 1.15 5.11 -3.84 -0.02 1.13 16 14 N -0.53 -9.92 4.86 -236.12 -1.15 -11.07 16 15 C 0.12 1.86 5.90 -4.98 -0.03 1.83 16 16 C -0.19 -2.83 4.18 -102.70 -0.43 -3.26 16 17 C 0.05 0.64 11.24 -16.74 -0.19 0.46 16 18 N -0.60 -6.86 6.08 -10.62 -0.06 -6.92 16 19 H 0.41 3.27 8.96 -40.82 -0.37 2.90 16 20 C 0.09 1.23 7.27 -83.92 -0.61 0.62 16 21 C -0.12 -1.57 10.06 -39.47 -0.40 -1.97 16 22 C -0.12 -1.67 9.95 -39.40 -0.39 -2.06 16 23 C 0.07 1.15 6.69 -39.27 -0.26 0.89 16 24 O -0.49 -7.34 13.50 -19.71 -0.27 -7.60 16 25 C -0.08 -1.38 8.53 -39.12 -0.33 -1.72 16 26 C -0.08 -1.25 5.01 -105.14 -0.53 -1.78 16 27 C 0.07 1.51 3.16 -3.83 -0.01 1.50 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.09 2.46 6.15 -51.93 -0.32 2.14 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.02 0.46 7.11 -51.93 -0.37 0.09 16 34 H 0.05 0.81 8.06 -51.93 -0.42 0.40 16 35 H 0.07 0.92 8.06 -51.93 -0.42 0.51 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.17 1.48 8.06 -52.49 -0.42 1.05 16 38 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.13 1.45 8.06 -52.48 -0.42 1.02 16 40 H 0.38 3.48 9.06 45.56 0.41 3.90 16 41 H 0.13 2.33 6.37 -52.49 -0.33 2.00 16 42 H 0.05 1.20 6.56 -51.93 -0.34 0.86 16 43 H 0.03 0.73 5.68 -51.93 -0.29 0.44 16 LS Contribution 337.98 15.07 5.09 5.09 Total: -1.00 -33.44 337.98 -10.24 -43.68 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -5.37 Total: 6.89 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -4.09 Total: -21.73 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: -0.58 Total: -43.69 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.27 Total: -7.60 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.44 -10.24 -43.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232866122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.771 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds