Wall clock time and date at job start Fri Apr 10 2020 20:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99928 * 2 1 4 4 H 1.48499 * 109.46897 * 269.99912 * 3 2 1 5 5 H 1.48497 * 109.47320 * 30.00163 * 3 2 1 6 6 H 1.48501 * 109.46980 * 150.00286 * 3 2 1 7 7 C 1.37882 * 119.99521 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99497 * 179.97438 * 7 2 1 9 9 C 1.50689 * 120.00301 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.50514 * 299.92009 * 9 7 2 11 11 C 1.53118 * 109.50697 * 59.99867 * 9 7 2 12 12 C 1.53121 * 109.16298 * 177.63428 * 11 9 7 13 13 C 1.53036 * 109.27700 * 302.34554 * 12 11 9 14 14 N 1.46844 * 109.52466 * 59.18272 * 13 12 11 15 15 C 1.46894 * 111.00084 * 174.16273 * 14 13 12 16 16 C 1.50697 * 109.47580 * 66.04032 * 15 14 13 17 17 C 1.34250 * 126.49072 * 260.00450 * 16 15 14 18 18 N 1.36804 * 109.93642 * 179.97438 * 17 16 15 19 19 H 0.96994 * 125.07177 * 180.02562 * 18 17 16 20 20 C 1.37894 * 109.85113 * 359.97438 * 18 17 16 21 21 C 1.39102 * 133.35970 * 179.97438 * 20 18 17 22 22 C 1.37676 * 119.99515 * 179.97438 * 21 20 18 23 23 C 1.39272 * 120.62444 * 359.72703 * 22 21 20 24 24 O 1.35991 * 119.86453 * 180.29978 * 23 22 21 25 25 C 1.38033 * 120.26492 * 0.55899 * 23 22 21 26 26 C 1.39674 * 119.60388 * 359.44298 * 25 23 22 27 27 C 1.46855 * 111.19350 * 298.25230 * 14 13 12 28 28 H 0.96999 * 120.00209 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.52463 * 57.73114 * 11 9 7 30 30 H 1.08998 * 109.57394 * 297.57128 * 11 9 7 31 31 H 1.09006 * 109.50307 * 182.40044 * 12 11 9 32 32 H 1.09006 * 109.50380 * 62.28630 * 12 11 9 33 33 H 1.08996 * 109.46249 * 299.16044 * 13 12 11 34 34 H 1.08998 * 109.45752 * 179.19405 * 13 12 11 35 35 H 1.09002 * 109.47031 * 306.04078 * 15 14 13 36 36 H 1.08997 * 109.47359 * 186.04077 * 15 14 13 37 37 H 1.07996 * 125.02800 * 0.03366 * 17 16 15 38 38 H 1.07997 * 119.99870 * 0.02684 * 21 20 18 39 39 H 1.08005 * 119.68471 * 179.97438 * 22 21 20 40 40 H 0.96695 * 114.00012 * 270.25108 * 24 23 22 41 41 H 1.08002 * 120.20058 * 179.72584 * 25 23 22 42 42 H 1.09005 * 109.45983 * 181.76069 * 27 14 13 43 43 H 1.08994 * 109.46339 * 301.73061 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6248 -2.5579 0.8909 11 6 0.3709 -2.5813 -1.2497 12 6 -0.3456 -3.9344 -1.2719 13 6 0.6938 -5.0571 -1.2389 14 7 1.5097 -4.9350 -0.0240 15 6 2.4265 -6.0747 0.1112 16 6 3.4383 -6.0408 -1.0051 17 6 3.4082 -6.7695 -2.1323 18 7 4.4928 -6.4699 -2.9104 19 1 4.6873 -6.8690 -3.7728 20 6 5.2676 -5.5152 -2.2862 21 6 6.4517 -4.8717 -2.6305 22 6 7.0003 -3.9383 -1.7800 23 6 6.3777 -3.6244 -0.5745 24 8 6.9299 -2.6955 0.2512 25 6 5.2052 -4.2561 -0.2118 26 6 4.6395 -5.2046 -1.0669 27 6 2.2442 -3.6635 -0.0034 28 1 -0.4850 0.8400 0.0004 29 1 0.9923 -2.4837 -2.1398 30 1 -0.3666 -1.7789 -1.2305 31 1 -0.9409 -4.0161 -2.1814 32 1 -0.9969 -4.0157 -0.4016 33 1 1.3359 -4.9835 -2.1165 34 1 0.1865 -6.0218 -1.2402 35 1 1.8601 -7.0046 0.0601 36 1 2.9413 -6.0151 1.0701 37 1 2.6408 -7.4853 -2.3874 38 1 6.9402 -5.1036 -3.5654 39 1 7.9201 -3.4419 -2.0522 40 1 7.5554 -3.0609 0.8917 41 1 4.7256 -4.0151 0.7253 42 1 2.8629 -3.6161 0.8928 43 1 2.8790 -3.5964 -0.8868 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232866122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:38 Heat of formation + Delta-G solvation = -8.934605 kcal Electronic energy + Delta-G solvation = -25163.090587 eV Core-core repulsion = 21786.351193 eV Total energy + Delta-G solvation = -3376.739394 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.31542 -39.70631 -39.29763 -36.26005 -35.74305 -34.01415 -32.28764 -31.61626 -30.07381 -29.38788 -26.90069 -26.82066 -24.04082 -23.54251 -23.10898 -22.55947 -20.84673 -19.78339 -18.97735 -18.86658 -18.33505 -17.11588 -16.79580 -16.32766 -16.09533 -15.68281 -15.64838 -15.38145 -14.91451 -14.82287 -14.60107 -14.41409 -14.06111 -13.64228 -13.60458 -13.49085 -13.06621 -12.87391 -12.74987 -12.64500 -12.51618 -12.18965 -12.09635 -11.76993 -11.64649 -11.39057 -11.27660 -10.86136 -10.62173 -10.47546 -10.36166 -9.16001 -8.99592 -8.48893 -8.08365 -6.21188 0.13786 0.53518 1.36316 1.36574 1.48694 1.74351 2.27133 2.41698 2.80481 3.17533 3.35411 3.37248 3.81361 3.93502 4.11824 4.27071 4.29890 4.34697 4.39442 4.46026 4.57418 4.73535 4.75327 4.81565 4.86881 4.93100 4.99632 5.02339 5.05610 5.12726 5.20431 5.25295 5.36881 5.45696 5.54698 5.57763 5.63819 5.66587 5.79546 6.00183 6.11322 6.16959 6.25853 6.47786 6.53210 6.77238 6.91216 6.95612 7.45780 8.96069 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.012200 B = 0.006388 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.552501 B = 4382.280923 C = 6021.180889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.017 3.983 3 Si 0.946 3.054 4 H -0.276 1.276 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.530 4.530 8 H 0.039 0.961 9 C 0.051 3.949 10 H -0.006 1.006 11 C -0.101 4.101 12 C -0.113 4.113 13 C 0.071 3.929 14 N -0.540 5.540 15 C 0.127 3.873 16 C -0.231 4.231 17 C 0.083 3.917 18 N -0.582 5.582 19 H 0.432 0.568 20 C 0.070 3.930 21 C -0.109 4.109 22 C -0.134 4.134 23 C 0.063 3.937 24 O -0.513 6.513 25 C -0.118 4.118 26 C -0.100 4.100 27 C 0.098 3.902 28 H 0.260 0.740 29 H 0.012 0.988 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.023 0.977 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.065 0.935 37 H 0.208 0.792 38 H 0.155 0.845 39 H 0.150 0.850 40 H 0.402 0.598 41 H 0.107 0.893 42 H 0.038 0.962 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.538 -17.614 -6.733 21.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.182 4.182 3 Si 0.772 3.228 4 H -0.202 1.202 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.057 0.943 9 C 0.032 3.968 10 H 0.012 0.988 11 C -0.139 4.139 12 C -0.150 4.150 13 C -0.057 4.057 14 N -0.262 5.262 15 C 0.000 4.000 16 C -0.239 4.239 17 C -0.045 4.045 18 N -0.186 5.186 19 H 0.272 0.728 20 C -0.037 4.037 21 C -0.130 4.130 22 C -0.153 4.153 23 C 0.018 3.982 24 O -0.325 6.325 25 C -0.137 4.137 26 C -0.105 4.105 27 C -0.030 4.030 28 H 0.070 0.930 29 H 0.031 0.969 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.041 0.959 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.084 0.916 37 H 0.225 0.775 38 H 0.173 0.827 39 H 0.168 0.832 40 H 0.259 0.741 41 H 0.125 0.875 42 H 0.056 0.944 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 9.712 -17.181 -6.745 20.857 hybrid contribution 1.274 1.178 -0.375 1.775 sum 10.986 -16.003 -7.120 20.676 Atomic orbital electron populations 1.70024 1.06892 1.26939 1.51487 1.25637 0.95654 1.01954 0.94917 0.85742 0.78833 0.80013 0.78246 1.20228 1.20150 1.19840 1.21457 0.92457 0.92553 1.50403 0.94263 1.18615 0.93062 0.91537 0.93562 0.98803 1.21412 0.98834 0.96740 0.96908 1.21612 0.97726 0.94843 1.00849 1.21970 0.94465 0.98935 0.90308 1.62348 1.23586 1.02199 1.38099 1.20630 0.90295 0.94383 0.94727 1.21228 0.98540 1.03193 1.00975 1.22169 0.91472 1.00530 0.90362 1.41708 1.20723 1.35605 1.20593 0.72763 1.18451 0.95632 0.95546 0.94080 1.20161 0.93922 0.97631 1.01268 1.21240 1.01503 0.98556 0.94042 1.18352 0.94402 0.92703 0.92782 1.84882 1.63175 1.34005 1.50401 1.20926 0.96369 0.96171 1.00208 1.19172 0.96938 0.99130 0.95304 1.21873 0.94725 0.88826 0.97571 0.93038 0.96943 0.92557 0.91309 0.92971 0.95867 0.88528 0.87404 0.91616 0.77493 0.82691 0.83223 0.74088 0.87500 0.94359 0.96468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.74 11.35 21.45 0.24 -55.49 16 2 C 0.02 1.01 5.30 84.66 0.45 1.46 16 3 Si 0.95 47.10 29.54 68.60 2.03 49.13 16 4 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 5 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.27 -13.54 7.11 99.48 0.71 -12.84 16 7 C -0.53 -32.05 8.57 25.60 0.22 -31.83 16 8 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 9 C 0.05 2.81 2.26 -11.49 -0.03 2.78 16 10 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 11 C -0.10 -5.15 5.02 30.67 0.15 -5.00 16 12 C -0.11 -4.46 6.09 30.65 0.19 -4.27 16 13 C 0.07 2.36 5.11 86.33 0.44 2.80 16 14 N -0.54 -19.99 4.86 -900.94 -4.38 -24.37 16 15 C 0.13 3.67 5.90 85.56 0.51 4.17 16 16 C -0.23 -6.45 4.18 -18.62 -0.08 -6.53 16 17 C 0.08 1.67 11.24 83.01 0.93 2.60 16 18 N -0.58 -11.12 6.08 -187.53 -1.14 -12.26 16 19 H 0.43 4.82 8.96 -92.71 -0.83 3.99 16 20 C 0.07 1.86 7.27 38.98 0.28 2.14 16 21 C -0.11 -2.58 10.06 22.34 0.22 -2.36 16 22 C -0.13 -3.54 9.95 22.39 0.22 -3.32 16 23 C 0.06 2.04 6.69 22.47 0.15 2.19 16 24 O -0.51 -15.99 13.50 -93.45 -1.26 -17.26 16 25 C -0.12 -4.21 8.53 22.57 0.19 -4.02 16 26 C -0.10 -3.25 5.01 -20.20 -0.10 -3.35 16 27 C 0.10 4.52 3.16 86.33 0.27 4.79 16 28 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 29 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 3.23 6.15 -2.39 -0.01 3.21 16 31 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 32 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 33 H 0.02 0.79 7.11 -2.39 -0.02 0.78 16 34 H 0.10 2.46 8.06 -2.39 -0.02 2.44 16 35 H 0.11 2.32 8.06 -2.39 -0.02 2.30 16 36 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.21 2.36 8.06 -2.91 -0.02 2.34 16 38 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 39 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 40 H 0.40 7.82 9.06 -74.06 -0.67 7.15 16 41 H 0.11 4.20 6.37 -2.91 -0.02 4.18 16 42 H 0.04 1.84 6.56 -2.38 -0.02 1.83 16 43 H 0.02 0.84 5.68 -2.39 -0.01 0.83 16 Total: -1.00 -77.18 337.98 -0.94 -78.12 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -0.46 Total: 19.88 kcal Atomic # 6 Polarization: -41.78 SS G_CDS: 4.03 Total: -37.75 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -5.27 Total: -92.12 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -1.26 Total: -17.26 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -77.18 -0.94 -78.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232866122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.183 kcal (2) G-P(sol) polarization free energy of solvation -77.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds