Wall clock time and date at job start Fri Apr 10 2020 20:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99908 * 2 1 4 4 H 1.48498 * 109.47083 * 239.99576 * 3 2 1 5 5 H 1.48501 * 109.47044 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47318 * 119.99706 * 3 2 1 7 7 C 1.37876 * 120.00516 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00673 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99713 * 0.02562 * 7 2 1 10 10 H 1.09011 * 109.53762 * 59.89834 * 9 7 2 11 11 C 1.53123 * 109.50632 * 299.80150 * 9 7 2 12 12 C 1.53114 * 109.16198 * 182.40528 * 11 9 7 13 13 C 1.53032 * 109.28141 * 57.65126 * 12 11 9 14 14 N 1.46844 * 109.52527 * 300.82107 * 13 12 11 15 15 C 1.46904 * 111.00328 * 185.83771 * 14 13 12 16 16 C 1.50693 * 109.46897 * 65.78983 * 15 14 13 17 17 C 1.34249 * 126.49042 * 259.69065 * 16 15 14 18 18 N 1.36803 * 109.93819 * 179.83360 * 17 16 15 19 19 H 0.96995 * 125.07660 * 180.17986 * 18 17 16 20 20 C 1.37903 * 109.84742 * 0.44702 * 18 17 16 21 21 C 1.39099 * 133.35348 * 179.66433 * 20 18 17 22 22 C 1.37684 * 119.99083 * 180.02562 * 21 20 18 23 23 C 1.39266 * 120.62395 * 0.04384 * 22 21 20 24 24 O 1.35993 * 119.86769 * 179.97438 * 23 22 21 25 25 C 1.38037 * 120.26665 * 0.02562 * 23 22 21 26 26 C 1.39678 * 119.60581 * 359.97339 * 25 23 22 27 27 C 1.46846 * 111.19783 * 61.73901 * 14 13 12 28 28 H 0.97000 * 120.00653 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.52219 * 62.49698 * 11 9 7 30 30 H 1.09001 * 109.57074 * 302.34474 * 11 9 7 31 31 H 1.09000 * 109.50493 * 297.71120 * 12 11 9 32 32 H 1.08996 * 109.50191 * 177.59676 * 12 11 9 33 33 H 1.09000 * 109.46311 * 180.80335 * 13 12 11 34 34 H 1.08998 * 109.46309 * 60.83577 * 13 12 11 35 35 H 1.08995 * 109.47201 * 185.79063 * 15 14 13 36 36 H 1.09000 * 109.46826 * 305.79012 * 15 14 13 37 37 H 1.08001 * 125.02767 * 359.97438 * 17 16 15 38 38 H 1.07994 * 120.00975 * 0.02562 * 21 20 18 39 39 H 1.08005 * 119.68839 * 180.02562 * 22 21 20 40 40 H 0.96700 * 114.00210 * 270.02431 * 24 23 22 41 41 H 1.08003 * 120.19875 * 179.97438 * 25 23 22 42 42 H 1.09008 * 109.46456 * 58.27625 * 27 14 13 43 43 H 1.09003 * 109.46474 * 178.24130 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6230 -2.5574 -0.8885 11 6 0.3738 -2.5830 1.2527 12 6 -0.3418 -3.9365 1.2753 13 6 0.6982 -5.0585 1.2388 14 7 1.5113 -4.9348 0.0223 15 6 2.4285 -6.0739 -0.1161 16 6 1.6335 -7.3350 -0.3365 17 6 1.3373 -8.2636 0.5867 18 7 0.5972 -9.2651 0.0203 19 1 0.2631 -10.0452 0.4900 20 6 0.4022 -9.0028 -1.3194 21 6 -0.2579 -9.6808 -2.3390 22 6 -0.2816 -9.1559 -3.6116 23 6 0.3517 -7.9478 -3.8927 24 8 0.3190 -7.4437 -5.1553 25 6 1.0133 -7.2605 -2.8950 26 6 1.0439 -7.7835 -1.6002 27 6 2.2449 -3.6629 0.0010 28 1 -0.4851 0.8400 -0.0004 29 1 -0.3642 -1.7810 1.2347 30 1 0.9964 -2.4852 2.1420 31 1 -0.9949 -4.0174 0.4064 32 1 -0.9349 -4.0194 2.1860 33 1 0.1915 -6.0236 1.2404 34 1 1.3423 -4.9853 2.1151 35 1 3.0889 -5.9074 -0.9671 36 1 3.0236 -6.1735 0.7916 37 1 1.6369 -8.2246 1.6236 38 1 -0.7518 -10.6187 -2.1325 39 1 -0.7960 -9.6862 -4.3995 40 1 1.0536 -7.7332 -5.7136 41 1 1.5045 -6.3240 -3.1143 42 1 2.8818 -3.5961 0.8832 43 1 2.8616 -3.6143 -0.8964 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232866125.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:42 Heat of formation + Delta-G solvation = 11.921292 kcal Electronic energy + Delta-G solvation = -24185.424919 eV Core-core repulsion = 20809.589905 eV Total energy + Delta-G solvation = -3375.835014 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.26334 -38.47691 -37.95710 -35.24762 -34.02421 -32.33630 -31.12955 -29.85802 -28.92026 -28.41973 -25.53095 -24.84041 -22.92140 -21.91290 -21.83550 -21.25665 -19.34778 -18.48828 -17.99730 -17.74850 -16.28202 -16.12423 -15.32914 -15.10012 -14.69702 -14.50928 -14.17744 -13.97105 -13.87696 -13.56267 -13.10396 -12.73853 -12.68602 -12.46708 -12.25391 -11.97326 -11.62446 -11.45881 -11.22694 -11.10918 -10.88204 -10.63215 -10.59799 -10.30977 -10.04456 -9.76283 -9.56263 -9.39020 -8.95934 -8.63447 -8.23667 -8.07937 -7.64679 -7.44463 -5.90745 -3.97012 1.11393 1.51805 2.67969 3.09684 3.36330 3.41047 3.43308 3.78890 4.30169 4.47520 4.74287 4.76113 4.87290 5.03272 5.27029 5.35644 5.39101 5.46353 5.69274 5.75236 5.80611 5.87969 5.97677 6.03810 6.11219 6.17723 6.34242 6.37572 6.49285 6.55813 6.59262 6.64188 6.80443 6.82077 6.84414 7.04435 7.07411 7.31113 7.47705 7.51193 7.78488 7.78859 7.82643 7.93565 8.17037 8.25596 8.55480 9.07142 9.66891 11.15163 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.018940 B = 0.003688 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.987199 B = 7590.178154 C = 8392.738396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.515 4.515 8 H 0.052 0.948 9 C 0.055 3.945 10 H 0.034 0.966 11 C -0.109 4.109 12 C -0.117 4.117 13 C 0.066 3.934 14 N -0.531 5.531 15 C 0.125 3.875 16 C -0.143 4.143 17 C 0.048 3.952 18 N -0.597 5.597 19 H 0.413 0.587 20 C 0.087 3.913 21 C -0.122 4.122 22 C -0.123 4.123 23 C 0.067 3.933 24 O -0.496 6.496 25 C -0.078 4.078 26 C -0.073 4.073 27 C 0.068 3.932 28 H 0.260 0.740 29 H 0.089 0.911 30 H 0.028 0.972 31 H 0.059 0.941 32 H 0.043 0.957 33 H 0.058 0.942 34 H 0.019 0.981 35 H 0.077 0.923 36 H 0.032 0.968 37 H 0.167 0.833 38 H 0.120 0.880 39 H 0.127 0.873 40 H 0.382 0.618 41 H 0.133 0.867 42 H 0.017 0.983 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.737 -21.226 -1.577 21.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.554 4.554 8 H 0.071 0.929 9 C 0.037 3.963 10 H 0.052 0.948 11 C -0.147 4.147 12 C -0.155 4.155 13 C -0.062 4.062 14 N -0.256 5.256 15 C -0.004 4.004 16 C -0.151 4.151 17 C -0.078 4.078 18 N -0.201 5.201 19 H 0.250 0.750 20 C -0.020 4.020 21 C -0.142 4.142 22 C -0.142 4.142 23 C 0.022 3.978 24 O -0.305 6.305 25 C -0.097 4.097 26 C -0.078 4.078 27 C -0.058 4.058 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.037 0.963 35 H 0.095 0.905 36 H 0.051 0.949 37 H 0.184 0.816 38 H 0.138 0.862 39 H 0.145 0.855 40 H 0.236 0.764 41 H 0.151 0.849 42 H 0.036 0.964 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.725 -20.892 -1.686 20.972 hybrid contribution 1.197 0.327 0.856 1.508 sum 1.923 -20.564 -0.830 20.671 Atomic orbital electron populations 1.69884 1.05832 1.26352 1.50617 1.24927 0.94795 0.98869 0.95196 0.86708 0.79619 0.83418 0.78504 1.20314 1.21362 1.20441 1.21120 0.92756 0.90734 1.50746 0.92933 1.18651 0.92630 0.90211 0.94841 0.94760 1.21638 0.99976 0.94703 0.98422 1.21662 0.97279 0.96570 0.99970 1.21986 0.95585 0.98761 0.89857 1.61966 1.23995 1.01661 1.37977 1.20339 0.92617 0.87329 1.00073 1.20233 1.05973 0.97510 0.91386 1.21602 0.98273 0.89559 0.98414 1.41673 1.48558 1.22491 1.07364 0.75036 1.18277 1.01967 0.97037 0.84699 1.19760 1.02874 1.00472 0.91138 1.20974 1.01342 0.95486 0.96424 1.18085 1.01151 0.93503 0.85067 1.84918 1.51570 1.72899 1.21142 1.20860 0.98152 0.99691 0.91017 1.18828 1.01157 0.94317 0.93464 1.22310 0.96394 0.88509 0.98629 0.93053 0.89266 0.95290 0.92205 0.93849 0.92405 0.96314 0.90494 0.94943 0.81621 0.86214 0.85493 0.76385 0.84944 0.96431 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.80 11.36 55.43 0.63 -25.17 16 2 C 0.06 1.78 5.31 -17.82 -0.09 1.68 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -14.30 8.56 -34.44 -0.29 -14.60 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 10 H 0.03 0.98 8.14 -51.92 -0.42 0.56 16 11 C -0.11 -2.65 5.03 -26.61 -0.13 -2.79 16 12 C -0.12 -2.39 6.09 -26.66 -0.16 -2.56 16 13 C 0.07 1.20 5.31 -3.84 -0.02 1.18 16 14 N -0.53 -10.04 4.65 -236.12 -1.10 -11.14 16 15 C 0.12 1.93 5.50 -4.98 -0.03 1.90 16 16 C -0.14 -2.03 4.91 -102.71 -0.50 -2.54 16 17 C 0.05 0.54 10.90 -16.74 -0.18 0.36 16 18 N -0.60 -6.07 6.08 -10.62 -0.06 -6.13 16 19 H 0.41 2.75 8.96 -40.82 -0.37 2.38 16 20 C 0.09 1.09 7.27 -83.92 -0.61 0.48 16 21 C -0.12 -1.34 10.06 -39.46 -0.40 -1.74 16 22 C -0.12 -1.42 9.95 -39.40 -0.39 -1.81 16 23 C 0.07 0.90 6.69 -39.27 -0.26 0.64 16 24 O -0.50 -6.14 13.50 -19.72 -0.27 -6.40 16 25 C -0.08 -1.17 10.03 -39.12 -0.39 -1.56 16 26 C -0.07 -1.07 6.35 -105.14 -0.67 -1.74 16 27 C 0.07 1.47 4.68 -3.84 -0.02 1.45 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.09 2.42 6.16 -51.93 -0.32 2.10 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.96 6.47 -51.93 -0.34 0.63 16 34 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 1.17 7.99 -51.93 -0.41 0.75 16 36 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 37 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 40 H 0.38 2.72 9.06 45.56 0.41 3.13 16 41 H 0.13 2.05 8.06 -52.48 -0.42 1.63 16 42 H 0.02 0.38 8.14 -51.92 -0.42 -0.05 16 43 H 0.06 1.24 8.02 -51.93 -0.42 0.83 16 LS Contribution 347.27 15.07 5.23 5.23 Total: -1.00 -32.32 347.27 -10.58 -42.91 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -5.63 Total: 4.65 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -4.37 Total: -20.42 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: -0.53 Total: -42.44 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.27 Total: -6.40 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.32 -10.58 -42.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232866125.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.826 kcal (2) G-P(sol) polarization free energy of solvation -32.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds