Wall clock time and date at job start Fri Apr 10 2020 20:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99908 * 2 1 4 4 H 1.48498 * 109.47083 * 239.99576 * 3 2 1 5 5 H 1.48501 * 109.47044 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47318 * 119.99706 * 3 2 1 7 7 C 1.37876 * 120.00516 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00673 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99713 * 0.02562 * 7 2 1 10 10 H 1.09011 * 109.53762 * 59.89834 * 9 7 2 11 11 C 1.53123 * 109.50632 * 299.80150 * 9 7 2 12 12 C 1.53114 * 109.16198 * 182.40528 * 11 9 7 13 13 C 1.53032 * 109.28141 * 57.65126 * 12 11 9 14 14 N 1.46844 * 109.52527 * 300.82107 * 13 12 11 15 15 C 1.46904 * 111.00328 * 185.83771 * 14 13 12 16 16 C 1.50693 * 109.46897 * 65.78983 * 15 14 13 17 17 C 1.34249 * 126.49042 * 259.69065 * 16 15 14 18 18 N 1.36803 * 109.93819 * 179.83360 * 17 16 15 19 19 H 0.96995 * 125.07660 * 180.17986 * 18 17 16 20 20 C 1.37903 * 109.84742 * 0.44702 * 18 17 16 21 21 C 1.39099 * 133.35348 * 179.66433 * 20 18 17 22 22 C 1.37684 * 119.99083 * 180.02562 * 21 20 18 23 23 C 1.39266 * 120.62395 * 0.04384 * 22 21 20 24 24 O 1.35993 * 119.86769 * 179.97438 * 23 22 21 25 25 C 1.38037 * 120.26665 * 0.02562 * 23 22 21 26 26 C 1.39678 * 119.60581 * 359.97339 * 25 23 22 27 27 C 1.46846 * 111.19783 * 61.73901 * 14 13 12 28 28 H 0.97000 * 120.00653 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.52219 * 62.49698 * 11 9 7 30 30 H 1.09001 * 109.57074 * 302.34474 * 11 9 7 31 31 H 1.09000 * 109.50493 * 297.71120 * 12 11 9 32 32 H 1.08996 * 109.50191 * 177.59676 * 12 11 9 33 33 H 1.09000 * 109.46311 * 180.80335 * 13 12 11 34 34 H 1.08998 * 109.46309 * 60.83577 * 13 12 11 35 35 H 1.08995 * 109.47201 * 185.79063 * 15 14 13 36 36 H 1.09000 * 109.46826 * 305.79012 * 15 14 13 37 37 H 1.08001 * 125.02767 * 359.97438 * 17 16 15 38 38 H 1.07994 * 120.00975 * 0.02562 * 21 20 18 39 39 H 1.08005 * 119.68839 * 180.02562 * 22 21 20 40 40 H 0.96700 * 114.00210 * 270.02431 * 24 23 22 41 41 H 1.08003 * 120.19875 * 179.97438 * 25 23 22 42 42 H 1.09008 * 109.46456 * 58.27625 * 27 14 13 43 43 H 1.09003 * 109.46474 * 178.24130 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6230 -2.5574 -0.8885 11 6 0.3738 -2.5830 1.2527 12 6 -0.3418 -3.9365 1.2753 13 6 0.6982 -5.0585 1.2388 14 7 1.5113 -4.9348 0.0223 15 6 2.4285 -6.0739 -0.1161 16 6 1.6335 -7.3350 -0.3365 17 6 1.3373 -8.2636 0.5867 18 7 0.5972 -9.2651 0.0203 19 1 0.2631 -10.0452 0.4900 20 6 0.4022 -9.0028 -1.3194 21 6 -0.2579 -9.6808 -2.3390 22 6 -0.2816 -9.1559 -3.6116 23 6 0.3517 -7.9478 -3.8927 24 8 0.3190 -7.4437 -5.1553 25 6 1.0133 -7.2605 -2.8950 26 6 1.0439 -7.7835 -1.6002 27 6 2.2449 -3.6629 0.0010 28 1 -0.4851 0.8400 -0.0004 29 1 -0.3642 -1.7810 1.2347 30 1 0.9964 -2.4852 2.1420 31 1 -0.9949 -4.0174 0.4064 32 1 -0.9349 -4.0194 2.1860 33 1 0.1915 -6.0236 1.2404 34 1 1.3423 -4.9853 2.1151 35 1 3.0889 -5.9074 -0.9671 36 1 3.0236 -6.1735 0.7916 37 1 1.6369 -8.2246 1.6236 38 1 -0.7518 -10.6187 -2.1325 39 1 -0.7960 -9.6862 -4.3995 40 1 1.0536 -7.7332 -5.7136 41 1 1.5045 -6.3240 -3.1143 42 1 2.8818 -3.5961 0.8832 43 1 2.8616 -3.6143 -0.8964 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232866125.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:49:41 Heat of formation + Delta-G solvation = -10.223310 kcal Electronic energy + Delta-G solvation = -24186.385181 eV Core-core repulsion = 20809.589905 eV Total energy + Delta-G solvation = -3376.795276 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.18345 -39.73972 -39.25516 -36.21631 -35.70757 -33.96439 -32.44069 -31.64934 -30.07544 -29.35019 -26.88943 -26.80078 -23.87845 -23.52419 -23.08256 -22.67597 -20.38220 -20.28013 -18.92806 -18.75682 -18.30717 -17.02669 -16.76360 -16.37840 -16.27074 -15.62895 -15.59177 -15.15623 -15.05294 -14.87470 -14.61505 -14.39081 -14.01914 -13.75359 -13.57943 -13.31687 -13.24236 -12.81901 -12.71659 -12.53990 -12.43419 -12.28322 -12.13799 -11.81263 -11.69046 -11.38820 -11.23969 -10.87478 -10.66269 -10.49372 -10.35929 -9.05541 -8.96503 -8.48950 -8.05796 -6.20737 0.17382 0.57653 1.41944 1.43985 1.51429 1.72337 2.29178 2.44490 2.83315 3.20711 3.35446 3.41367 3.86369 3.93605 4.13835 4.25304 4.27909 4.31808 4.41672 4.45206 4.57447 4.65065 4.73782 4.79757 4.81049 4.87192 4.93030 5.00819 5.02799 5.13066 5.18396 5.22105 5.40174 5.44932 5.54490 5.61630 5.64719 5.69739 5.81656 6.00081 6.14281 6.17241 6.26375 6.47008 6.51174 6.79409 6.92601 6.98467 7.47193 8.98685 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.018940 B = 0.003688 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.987199 B = 7590.178154 C = 8392.738396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.537 4.537 8 H 0.053 0.947 9 C 0.053 3.947 10 H -0.012 1.012 11 C -0.101 4.101 12 C -0.111 4.111 13 C 0.074 3.926 14 N -0.547 5.547 15 C 0.132 3.868 16 C -0.186 4.186 17 C 0.077 3.923 18 N -0.580 5.580 19 H 0.433 0.567 20 C 0.074 3.926 21 C -0.108 4.108 22 C -0.131 4.131 23 C 0.064 3.936 24 O -0.513 6.513 25 C -0.116 4.116 26 C -0.097 4.097 27 C 0.084 3.916 28 H 0.260 0.740 29 H 0.054 0.946 30 H 0.026 0.974 31 H 0.038 0.962 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.031 0.969 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.202 0.798 38 H 0.156 0.844 39 H 0.152 0.848 40 H 0.403 0.597 41 H 0.107 0.893 42 H 0.020 0.980 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.917 -23.881 -0.159 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.576 4.576 8 H 0.071 0.929 9 C 0.034 3.966 10 H 0.006 0.994 11 C -0.139 4.139 12 C -0.149 4.149 13 C -0.053 4.053 14 N -0.272 5.272 15 C 0.004 3.996 16 C -0.194 4.194 17 C -0.051 4.051 18 N -0.184 5.184 19 H 0.274 0.726 20 C -0.033 4.033 21 C -0.128 4.128 22 C -0.150 4.150 23 C 0.019 3.981 24 O -0.325 6.325 25 C -0.135 4.135 26 C -0.102 4.102 27 C -0.044 4.044 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.219 0.781 38 H 0.174 0.826 39 H 0.169 0.831 40 H 0.260 0.740 41 H 0.125 0.875 42 H 0.038 0.962 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.913 -23.598 -0.273 23.617 hybrid contribution 1.114 1.089 0.353 1.597 sum 2.026 -22.509 0.079 22.600 Atomic orbital electron populations 1.70047 1.07301 1.27090 1.51217 1.25749 0.95635 1.02421 0.94757 0.85657 0.78392 0.78999 0.78865 1.19720 1.20991 1.19416 1.21514 0.93032 0.92149 1.50856 0.92873 1.18570 0.93000 0.91502 0.93487 0.99356 1.21430 0.99018 0.96037 0.97430 1.21578 0.97690 0.95342 1.00265 1.21919 0.94980 0.98543 0.89877 1.61873 1.24923 1.01576 1.38817 1.20249 0.92257 0.86639 1.00420 1.20142 1.08651 0.98276 0.92323 1.22039 0.95759 0.88147 0.99142 1.41664 1.47476 1.22791 1.06502 0.72622 1.18446 1.02247 0.96566 0.86021 1.20170 1.01278 1.01151 0.90244 1.21241 1.01285 0.94863 0.97630 1.18300 1.00800 0.94037 0.84961 1.84839 1.52892 1.73522 1.21225 1.20836 1.00454 0.99783 0.92444 1.19094 1.01952 0.95645 0.93520 1.21946 0.95213 0.88849 0.98388 0.93129 0.92708 0.95498 0.94276 0.91322 0.90030 0.95050 0.91545 0.93116 0.78148 0.82630 0.83074 0.73958 0.87524 0.96185 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.25 11.36 21.45 0.24 -55.00 16 2 C 0.01 0.74 5.31 84.66 0.45 1.19 16 3 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.54 -30.82 8.56 25.60 0.22 -30.61 16 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.05 2.85 2.26 -11.49 -0.03 2.82 16 10 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 11 C -0.10 -5.05 5.03 30.67 0.15 -4.89 16 12 C -0.11 -4.53 6.09 30.64 0.19 -4.35 16 13 C 0.07 2.58 5.31 86.32 0.46 3.04 16 14 N -0.55 -20.77 4.65 -900.95 -4.19 -24.96 16 15 C 0.13 3.99 5.50 85.55 0.47 4.46 16 16 C -0.19 -5.01 4.91 -18.63 -0.09 -5.11 16 17 C 0.08 1.46 10.90 83.01 0.91 2.36 16 18 N -0.58 -9.51 6.08 -187.53 -1.14 -10.65 16 19 H 0.43 3.67 8.96 -92.71 -0.83 2.84 16 20 C 0.07 1.69 7.27 38.98 0.28 1.97 16 21 C -0.11 -2.06 10.06 22.35 0.22 -1.84 16 22 C -0.13 -2.78 9.95 22.39 0.22 -2.56 16 23 C 0.06 1.74 6.69 22.47 0.15 1.89 16 24 O -0.51 -12.92 13.50 -93.47 -1.26 -14.18 16 25 C -0.12 -3.63 10.03 22.57 0.23 -3.41 16 26 C -0.10 -2.83 6.35 -20.20 -0.13 -2.96 16 27 C 0.08 3.70 4.68 86.33 0.40 4.10 16 28 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 29 H 0.05 3.10 6.16 -2.39 -0.01 3.09 16 30 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.08 2.47 6.47 -2.39 -0.02 2.46 16 34 H 0.03 1.02 8.14 -2.39 -0.02 1.01 16 35 H 0.07 2.09 7.99 -2.39 -0.02 2.07 16 36 H 0.05 1.34 8.12 -2.39 -0.02 1.32 16 37 H 0.20 2.33 8.06 -2.91 -0.02 2.31 16 38 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 39 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 40 H 0.40 5.84 9.06 -74.06 -0.67 5.17 16 41 H 0.11 3.70 8.06 -2.91 -0.02 3.68 16 42 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.05 2.32 8.02 -2.39 -0.02 2.30 16 Total: -1.00 -73.69 347.27 -0.68 -74.37 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -0.47 Total: 17.42 kcal Atomic # 6 Polarization: -37.98 SS G_CDS: 4.11 Total: -33.87 kcal Atomic # 7 Polarization: -85.52 SS G_CDS: -5.08 Total: -90.60 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -1.26 Total: -14.18 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -73.69 -0.68 -74.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232866125.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.146 kcal (2) G-P(sol) polarization free energy of solvation -73.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds